SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1391

Length: 1721 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1391

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	polygalacturonase [Arabidopsis thaliana] gb\|AEE30389.1\| polygalacturonase [Arabidopsis thaliana]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Sma3	Polygalacturonase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Polygalacturonase.	EC:3.2.1.15	-	0.0	-

Source	KEGGs	Term	Type	Identity
Sma3	Pentose and glucuronate interconversions	00040		%
Sma3	Starch and sucrose metabolism	00500		%
Sma3	Metabolic pathways	01100		%
Sma3	Galacturan 1,4-alpha-galacturonidase.	EC:3.2.1.67	-	-

Source	KEGGs	Term	Identity
Sma3	Pentose and glucuronate interconversions	00040	%
Sma3	Starch and sucrose metabolism	00500	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	ADPG1; ADPG2; AT4g01890; At1g02460; At1g05650; At1g05660; At1g56710; At1g70500; At1g80170; At2g41850; At2g43860; At2g43870; At2g43890; At3g07970; At3g26610; At3g26610/MFE16_13; At3g57510; At5g14650; At5g17200; At5g27530; CUPG1; Cry j 2.1; Cry j 2.2; Cry j

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	amyloplast	GO:0009501	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	polygalacturonase activity	GO:0004650	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	cell wall modification involved in abscission	GO:0009830	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	anther dehiscence	GO:0009901	Biological Process	-
Sma3	fruit dehiscence	GO:0010047	Biological Process	-
Sma3	floral organ abscission	GO:0010227	Biological Process	-
Sma3	pectin catabolic process	GO:0045490	Biological Process	-
Sma3	pollen sperm cell differentiation	GO:0048235	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G23460.1	Pectin lyase-like superfamily protein chr1:8327382-8329622 FORWARD LENGTH=460	51%
RefSeq	Arabidopsis thaliana	NP_173760.2	polygalacturonase [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002328587.1	predicted protein, partial [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQB8

Fln msg:

Fln protein: MVYIISQNVRLWALICIVNLLFHASPSTQNRQQLPSFNSQHKPVEGSFIKSLEPDAAATVFSVDSHGAKGDGTSDDTQAFSAAWNAACTSSSSSVFLVPQGKKYLVKPINLKGPCKASDMIAQISGIIVAPDDPASWNSQDSSVWLQFSNLQGARIQGGGTIYGSGQKWWENSCKRDKRKSCRQAPSAMTIDSSTHVIISNLKFQNSQQMHLVISGSTNVQVQNLQIVAPEDSPNTDGIHISTSQHVVVQNCKIGTGDDCVSIVSQSSDIKISKLACGPGHGISIGSLGKDNAKGTVSDVVVDGAYLTGTENGVRIKTWQGGSGYAKRIIFKNVIMNRVSNPIIIDQYYCDSRSPCQNQSSGVQVSDVTYTDISGTSATKEAIRLACSKSVPCQNIVMDNINLIHMDNGDPAIAFCENVHVLSRGRVDPPPLQR*

Protein Length: 436

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGGCAACCAGGATATAAAT_-_ATGGTGTACATAATCTCCCAAAACGTACGCCTCTGGGCCCTAATTTGCATCGTTAATCTTCTTTTCCATGCATCTCCTTCCACCCAAAACAGACAACAACTACCAAGCTTCAACTCTCAGCATAAACCAGTAGAAGGTAGCTTTATAAAGTCGTTGGAACCTGATGCTGCTGCTACAGTGTTTAGCGTGGATAGCCATGGAGCCAAAGGAGATGGCACCTCTGACGACACGCAGGCCTTCTCCGCAGCATGGAATGCAGCATGCACGAGCAGCTCGAGTTCTGTTTTTCTCGTTCCACAAGGGAAAAAATACCTTGTTAAGCCTATCAACTTGAAAGGTCCTTGCAAGGCTAGTGATATGATTGCTCAGATATCGGGGATAATAGTTGCCCCAGATGATCCGGCCTCTTGGAATTCCCAAGACTCCAGCGTCTGGCTTCAATTCTCCAATCTGCAAGGAGCAAGAATCCAGGGAGGAGGGACTATTTATGGGTCAGGCCAGAAATGGTGGGAAAATTCTTGCAAGAGGGATAAGAGAAAGAGTTGCAGACAAGCCCCTTCTGCAATGACCATTGATTCTAGCACACATGTCATCATAAGCAATTTGAAGTTCCAGAACAGTCAACAGATGCATCTCGTAATATCTGGTTCAACAAATGTTCAAGTCCAAAACCTGCAAATCGTTGCACCGGAAGACAGTCCAAATACTGATGGAATTCACATATCTACCTCCCAACATGTAGTGGTTCAGAATTGTAAAATCGGAACAGGAGACGACTGTGTTTCTATTGTTTCACAGAGCTCAGATATTAAAATCAGCAAGCTAGCGTGCGGTCCTGGGCACGGAATAAGCATTGGAAGTCTGGGCAAGGATAATGCAAAAGGTACCGTTTCGGACGTGGTTGTTGATGGAGCTTATCTGACTGGCACAGAAAATGGAGTGCGTATAAAAACATGGCAGGGCGGTTCCGGATATGCCAAACGAATTATTTTCAAAAATGTGATAATGAATAGGGTCTCGAATCCCATCATTATAGACCAATATTACTGTGACTCTCGGAGTCCATGCCAAAATCAGAGTTCAGGGGTGCAAGTTAGCGACGTGACGTACACAGACATAAGCGGCACTTCGGCAACAAAAGAGGCAATAAGATTGGCGTGTAGCAAGAGTGTTCCATGTCAAAATATCGTAATGGACAACATAAATCTAATTCACATGGATAACGGAGATCCAGCCATTGCTTTCTGCGAGAATGTGCACGTTTTAAGCCGTGGTCGGGTCGACCCACCTCCTCTTCAGCGGTGA___TAAAATTATTTTCTTTGAATTTATTTGAATGGTAGATTTCAAAAATATGTTCCAGTTTACTGAGAAAAGCATGATAAATTGTTTCACTCTACCCTTATTTGTAGCCAAATATTACTTGAAGCCCATTGCTCGATCCTGCTGCTATCTGTGAGATTCTGGCTTTATAGAAATAGTATGGTTGTGAAGGAAATCCTTAAATTTAACAACTATATTTGCTGGAATATTTGCAAGTTGGGGTTCTAGATATCGACACCCAGCCTTCTTCGTGGCCGTGTAATAATGGATCGGATCAGCTAATAACAATCCCACTATGATTGTTTGATGAGTTAATTAAATCTATTCTATTGGGGGCATTTTTCTC

Fln Alignment:

Contig1391___MVYIISQNVRLWALICIVNLLFHASPSTQNRQQLPSFNSQHKPVEGSFIKSLEPDAAATVFSVDSHGAKGDGTSDDTQAFSAAWNAACTSSSSSVFLVPQGKKYLVKPINLKGPCKASDMIAQISGIIVAPDDPASWNSQDSSVWLQFSNLQGARIQGGGTIYGSGQKWWENSCKRDKRKSCRQAPSAMTIDSSTHVIISNLKFQNSQQMHLVISGSTNVQVQNLQIVAPEDSPNTDGIHISTSQHVVVQNCKIGTGDDCVSIVSQSSDIKISKLACGPGHGISIGSLGKDNAKGTVSDVVVDGAYLTGTENGVRIKTWQGGSGYAKRIIFKNVIMNRVSNPIIIDQYYCDSRS------PCQNQSSGVQVSDVTYTDISGTSATKEAIRLACSKSVPCQNIVMDNINLIHMDNGDPAIAFCENVHVLSRGRVDPP
C0PQB8______________MVYRNSENLTLCTRICIVSLLFCTGFSTEERS---AFNSDRRRVEAPLIKSSDLDPSAAVFSVDSYGAKGNGVSDDSQAFLAAWNAACTSSSDSIFLVPHGNSYLVKPISFNGPCNTGSLTAQISGRIVAPADPCNWNPEDRTIWLQFSKVQGLTIHGGGIIDGSGEKWWAGSCSRDQNKVCLSVPFAFVVNSSSNVHLRDLTFQNSQKFHVVISLSKHVEVENLQIVAPGDSPNTDGIHIFTSEHVMIRNCTIATGDDCVSIIAQSSHIQVNDIICGPGHGISIGSLGKYNATDTVSDVVVNRASLSGTQNGLRIKTWQGGSGYAQGIIFQHVKMINVSNPIIIDQYYCAGSSRCNQPAPCNNQTSAVQVNNVTYTGITGTSATQEAIKLACSATVPCTNIVLEDISL-QLNNGDTPSSLSANVQGSSTGQVIPP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain