SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1369

Length: 3010 nt

UniGene Fasta

>sp_v3.0_unigene1369
TATATATGGACAACATATAAATTGTGTTTTTTTCCTTCCATTACCAGCATTCATTCAGATGCGTTTAATTTGGGAATACGTTCTTACAATTTATTTTTTCCACTGCCGGTGGATTCTAATGGCTCAGATTCTTTGCGTTTGATTCATGAATACGTTCTTACGATTTATATTGACACTGTCAGTGACGTTGACATCCATCGAGCCACTGCTTCCACTAAAGTTGGCTGGATTTCAATTTCTACTCGTCGCAGGAAGGTTATAACCATGGCCGAAGCTCCTGTCGAGGAATTTCTGGACGTGCTCACCAATACTGGTCAGCATACAGGCATCTCCAAGCCGAGGAGCTTAATTCACAAGAATGGTGATTACCATCGAGCAGTTCACATTTGGATTTATGTGGAAAGCACTGGGGAGTTACTACTGCAGCGTCGTGCAGATTGTAAAGACTCATGGCCAGGACAGTGGGATATCTCCAGTGCAGGTCATATCTCTGCTGGTGATACATCCCTTATAAGTGCCAGGAGAGAGCTACAAGAAGAGTTAGGAATAACACTTCCAGAGGAAGCATTTGAATTACTTTTTGTGTATCTTCAAGAATGTGTTATAAATGATGGGACATATATTAACAACGAGTTTAATGATGTTTATTTGGTGACAACATTGGATCCAATTCCGTTGGAAGCCTTTACACTTCAGGAGACAGAAGTTTCAGCAGTTAAATACATTTCATGGAAACAATATAGGGAGGTTTTACAGAAGGAAGATGCAGCCTATGTCCCATATGACGTAGATGGGCAGTATGGCCAACTTTTTAGAATATTGGAGGACAGATACAAAGAAAACAGGGAAGCAAGATGTTTGAACATTCACAAAAAGCTTGACCGATATGTCCCTGTGACTCTCATGTCAGAGTTAAGTGGACTTCGCCCTGGAGACAGAGAGGCTCTAATTCTTACTGTTAAAGCTGCCAAAGTTTTGGATTCCATTTTTTATGAGCAGGTGTGGTCTAGTAACCTAGAATTGAAGAACTGGCTGGAACAGCATTCAGAGGATTCTGAGCTTGATAAAGTCAAGTTTAACTACTATTTAATTAACAAGAGCCCATGGTCATGTCTTGATGATAATGAGGCATTTTTGAGCACCGCAGATTCAGCAATCAAATTGGCTAAAGAAGCTATGAAGCCAGTCTCCGGGTGGGAGGGTTTGAAATTTAGAACAGCCTTTCCTCAATCCAAGCCACAGGGTGCAAATTTCTATCCTCCAGATATGGACAGACAGGAATTCGATTTATGGAAGAGCACATTACCCAAGGACCAGCAGGATTCCGCTGTTGGTTATTTCACTGTAATTCGAAGGCCAAAAGACTCATTCTTTAGTAATATGCCATCACATATGGAGTTATCAACAGTAAATCAGCTCTGCAATGTCAAGTCTTTCAATGCCCACAATCTTTTGATTGTGCCATACTCGATAGAGTATGAAAGTTATTTGAAAGATGCAGCCGGCTTGTTACATAAAGCTGGAAATGTTGCCGACACACCAAGTTTGAAGAGGTTGCTGAAAGCGAAGGGTGATGCATTCCTTTCAAATGACTACTATGAGTCAGATATAGCGTGGATGGAACTGGATTCTGATATTGATGTTACGATTGGACCTTACGAGACATATGAAGACACTCTTTATGGATACAAGGCTACATTTGAAGCGTTTGTTGGAATCCGAGACGAGGTGGCAACATCTCAAATCAAACTTTTCAGTGATCATTTACAGGAGTTGGAGAATAATCTTCCTTTGGATGACAAGTACAAATCAAAATATGTGGCCGCTGCTCCTATTCGTGTTATTCAACTGATATATAATTCAGGGGATGTCAAAGGACCTCAAACAGTTGCCTTCAATTTGCCAAATGATGAGAGAATAGTGGAAGAGAGGGGGACTGCCATGGTCATGCTCAAAAATGTTGCAGAGGCTAAATTTAGGTCTATACTCCTACCCATTACGGATACATGCATTTCTGAGGAACAAAAGCAATATGTGGATTTTGAGTCCATGTTCACACATACAGTTTGCCATGAATGTTGCCATGGAATTGGGCCTCACACCATTGAGCTTCCCAATGGCAAGCAGTCAACAGTTCGGATGGAGCTTCAGGAACTTCATTCAGCATTAGAAGAAGCAAAAGCTGATATTGTGGGATTGTGGGCTCTTCAGCATCTTGTTGATCAGGGATTTCTTTCTAAAAGTTTATCAAAATCAATGTATGTCTCTTTCCTTGCTGGGTGCTTTCGCTCAATCAGATTTGGACTGCAAGAGGCTCACGGGAAAGGACAAGCTCTACAATTTAATTGGATATATGAAAATGGAGGATTTGTAATGCATTCAAATGGGTCATTTTCTGTTGATTTTACAAAGGTGCAAGGAGCAGTTGAGAGTTTGAGCAGGGAAGTAATGACAATACAAGCAAAGGGTGACAAACCTGCTGCCAAATTATTTTTGGATAAGTATGCTACAACTACCCATCCATTACAGCAGGCACTTTCGAAACTGGAAACAATCCAGGTACCTGTAGACATAGCTCCTTCATTCACTATCATCAATCAATTACTAAGCCAGCAAGGATAATTCCATATCCTTATAACATTGATTATTGAAGTCATTGTATGAAACATGACCTCTGAGGTCACATCTGTCCAGTTATAATGAATAAACAAATGATGTGTCTGATATAATGTACAGCTCACTGCATTGCCTTCATATTGCTTGGTTACAGAATTTGTCTTCAACATCTAATTGTCATGTTATCTGATATGCAATAAAGAAGTGCATGGCTGCAGGATATTCTGTTCTCCTGGAGTAAAATACCATCACAAACATTATAGAGCATTTATCATTTTTGTGTTGGTTTATTGATGAACACATTTCTGTCTATCAAAATTGAAGCAGGTTGTGTGAAAAAAATCGGTAACTAACTTACATTATTTTATGTCTAATACTAGAAAGAAAATATTCG

Ace file of the UniGene sp_v3.0_unigene1369

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nudix hydrolase 3 [Arabidopsis thaliana] sp\|Q8L831.1\|NUDT3_ARATH RecName: Full=Nudix hydrolase 3; Short=AtNUDT3 gb\|AAM53332.1\| unknown protein [Arabidopsis thaliana] gb\|AAN15461.1\| unknown protein [Arabidopsis thaliana] gb\|AEE36287.1\| nudix hydrolase 3 [A	-	-	0.0	64%
FL-Next	sp=Nudix hydrolase 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%

Source	Gene names
Sma3	At1g79690; F20B17.11; GSVIVT00025230001; GSVIVT00030832001; NUDT3; OJ1249_F12.31; Os02g0793300; OsI_09255; OsJ_08693; P0700F06.19; PHYPADRAFT_94347; POPTRDRAFT_290317; POPTRDRAFT_555160; POPTRDRAFT_583757; POPTRDRAFT_647201; POPTRDRAFT_647209; POPTRDRAFT_

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	NUDIX hydrolase domain	IPR000086	-	-
Sma3	Protein of unknown function DUF1195	IPR010608	-	-
Sma3	Domain of unknown function DUF1618	IPR011676	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G79690.1	atnudt3, NUDT3 nudix hydrolase homolog 3 chr1:29985360-29990171 FORWARD LENGTH=772	64%
RefSeq	Arabidopsis thaliana	NP_565218.1	nudix hydrolase 3 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002333368.1	predicted protein, partial [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8L831

Fln msg:

Fln protein: MAEAPVEEFLDVLTNTGQHTGISKPRSLIHKNGDYHRAVHIWIYVESTGELLLQRRADCKDSWPGQWDISSAGHISAGDTSLISARRELQEELGITLPEEAFELLFVYLQECVINDGTYINNEFNDVYLVTTLDPIPLEAFTLQETEVSAVKYISWKQYREVLQKEDAAYVPYDVDGQYGQLFRILEDRYKENREARCLNIHKKLDRYVPVTLMSELSGLRPGDREALILTVKAAKVLDSIFYEQVWSSNLELKNWLEQHSEDSELDKVKFNYYLINKSPWSCLDDNEAFLSTADSAIKLAKEAMKPVSGWEGLKFRTAFPQSKPQGANFYPPDMDRQEFDLWKSTLPKDQQDSAVGYFTVIRRPKDSFFSNMPSHMELSTVNQLCNVKSFNAHNLLIVPYSIEYESYLKDAAGLLHKAGNVADTPSLKRLLKAKGDAFLSNDYYESDIAWMELDSDIDVTIGPYETYEDTLYGYKATFEAFVGIRDEVATSQIKLFSDHLQELENNLPLDDKYKSKYVAAAPIRVIQLIYNSGDVKGPQTVAFNLPNDERIVEERGTAMVMLKNVAEAKFRSILLPITDTCISEEQKQYVDFESMFTHTVCHECCHGIGPHTIELPNGKQSTVRMELQELHSALEEAKADIVGLWALQHLVDQGFLSKSLSKSMYVSFLAGCFRSIRFGLQEAHGKGQALQFNWIYENGGFVMHSNGSFSVDFTKVQGAVESLSREVMTIQAKGDKPAAKLFLDKYATTTHPLQQALSKLETIQVPVDIAPSFTIINQLLSQQG*

Protein Length: 787

Fln nts: TATATATGGACAACATATAAATTGTGTTTTTTTCCTTCCATTACCAGCATTCATTCAGATGCGTTTAATTTGGGAATACGTTCTTACAATTTATTTTTTCCACTGCCGGTGGATTCTAATGGCTCAGATTCTTTGCGTTTGATTCATGAATACGTTCTTACGATTTATATTGACACTGTCAGTGACGTTGACATCCATCGAGCCACTGCTTCCACTAAAGTTGGCTGGATTTCAATTTCTACTCGTCGCAGGAAGGTTATAACC_-_ATGGCCGAAGCTCCTGTCGAGGAATTTCTGGACGTGCTCACCAATACTGGTCAGCATACAGGCATCTCCAAGCCGAGGAGCTTAATTCACAAGAATGGTGATTACCATCGAGCAGTTCACATTTGGATTTATGTGGAAAGCACTGGGGAGTTACTACTGCAGCGTCGTGCAGATTGTAAAGACTCATGGCCAGGACAGTGGGATATCTCCAGTGCAGGTCATATCTCTGCTGGTGATACATCCCTTATAAGTGCCAGGAGAGAGCTACAAGAAGAGTTAGGAATAACACTTCCAGAGGAAGCATTTGAATTACTTTTTGTGTATCTTCAAGAATGTGTTATAAATGATGGGACATATATTAACAACGAGTTTAATGATGTTTATTTGGTGACAACATTGGATCCAATTCCGTTGGAAGCCTTTACACTTCAGGAGACAGAAGTTTCAGCAGTTAAATACATTTCATGGAAACAATATAGGGAGGTTTTACAGAAGGAAGATGCAGCCTATGTCCCATATGACGTAGATGGGCAGTATGGCCAACTTTTTAGAATATTGGAGGACAGATACAAAGAAAACAGGGAAGCAAGATGTTTGAACATTCACAAAAAGCTTGACCGATATGTCCCTGTGACTCTCATGTCAGAGTTAAGTGGACTTCGCCCTGGAGACAGAGAGGCTCTAATTCTTACTGTTAAAGCTGCCAAAGTTTTGGATTCCATTTTTTATGAGCAGGTGTGGTCTAGTAACCTAGAATTGAAGAACTGGCTGGAACAGCATTCAGAGGATTCTGAGCTTGATAAAGTCAAGTTTAACTACTATTTAATTAACAAGAGCCCATGGTCATGTCTTGATGATAATGAGGCATTTTTGAGCACCGCAGATTCAGCAATCAAATTGGCTAAAGAAGCTATGAAGCCAGTCTCCGGGTGGGAGGGTTTGAAATTTAGAACAGCCTTTCCTCAATCCAAGCCACAGGGTGCAAATTTCTATCCTCCAGATATGGACAGACAGGAATTCGATTTATGGAAGAGCACATTACCCAAGGACCAGCAGGATTCCGCTGTTGGTTATTTCACTGTAATTCGAAGGCCAAAAGACTCATTCTTTAGTAATATGCCATCACATATGGAGTTATCAACAGTAAATCAGCTCTGCAATGTCAAGTCTTTCAATGCCCACAATCTTTTGATTGTGCCATACTCGATAGAGTATGAAAGTTATTTGAAAGATGCAGCCGGCTTGTTACATAAAGCTGGAAATGTTGCCGACACACCAAGTTTGAAGAGGTTGCTGAAAGCGAAGGGTGATGCATTCCTTTCAAATGACTACTATGAGTCAGATATAGCGTGGATGGAACTGGATTCTGATATTGATGTTACGATTGGACCTTACGAGACATATGAAGACACTCTTTATGGATACAAGGCTACATTTGAAGCGTTTGTTGGAATCCGAGACGAGGTGGCAACATCTCAAATCAAACTTTTCAGTGATCATTTACAGGAGTTGGAGAATAATCTTCCTTTGGATGACAAGTACAAATCAAAATATGTGGCCGCTGCTCCTATTCGTGTTATTCAACTGATATATAATTCAGGGGATGTCAAAGGACCTCAAACAGTTGCCTTCAATTTGCCAAATGATGAGAGAATAGTGGAAGAGAGGGGGACTGCCATGGTCATGCTCAAAAATGTTGCAGAGGCTAAATTTAGGTCTATACTCCTACCCATTACGGATACATGCATTTCTGAGGAACAAAAGCAATATGTGGATTTTGAGTCCATGTTCACACATACAGTTTGCCATGAATGTTGCCATGGAATTGGGCCTCACACCATTGAGCTTCCCAATGGCAAGCAGTCAACAGTTCGGATGGAGCTTCAGGAACTTCATTCAGCATTAGAAGAAGCAAAAGCTGATATTGTGGGATTGTGGGCTCTTCAGCATCTTGTTGATCAGGGATTTCTTTCTAAAAGTTTATCAAAATCAATGTATGTCTCTTTCCTTGCTGGGTGCTTTCGCTCAATCAGATTTGGACTGCAAGAGGCTCACGGGAAAGGACAAGCTCTACAATTTAATTGGATATATGAAAATGGAGGATTTGTAATGCATTCAAATGGGTCATTTTCTGTTGATTTTACAAAGGTGCAAGGAGCAGTTGAGAGTTTGAGCAGGGAAGTAATGACAATACAAGCAAAGGGTGACAAACCTGCTGCCAAATTATTTTTGGATAAGTATGCTACAACTACCCATCCATTACAGCAGGCACTTTCGAAACTGGAAACAATCCAGGTACCTGTAGACATAGCTCCTTCATTCACTATCATCAATCAATTACTAAGCCAGCAAGGATAA___TTCCATATCCTTATAACATTGATTATTGAAGTCATTGTATGAAACATGACCTCTGAGGTCACATCTGTCCAGTTATAATGAATAAACAAATGATGTGTCTGATATAATGTACAGCTCACTGCATTGCCTTCATATTGCTTGGTTACAGAATTTGTCTTCAACATCTAATTGTCATGTTATCTGATATGCAATAAAGAAGTGCATGGCTGCAGGATATTCTGTTCTCCTGGAGTAAAATACCATCACAAACATTATAGAGCATTTATCATTTTTGTGTTGGTTTATTGATGAACACATTTCTGTCTATCAAAATTGAAGCAGGTTGTGTGAAAAAAATCGGTAACTAACTTACATTATTTTATGTCTAATACTAGAAAGAAAATATTCG

Fln Alignment:

Contig1369___EEFLDVLTNTGQHTGISKPRSLIHKNGDYHRAVHIWIYVESTGELLLQRRADCKDSWPGQWDISSAGHISAGDTSLISARRELQEELGITLPEEAFELLFVYLQECVINDGTYINNEFNDVYLVTTLDPIPLEAFTLQETEVSAVKYISWKQYREVLQKEDAAYVPYDVDGQYGQLFRILEDRYKENREARCLNIHKKLDRYVPVTLMSELSGLRPGDREALILTVKAAKVLDSIFYEQVWSSNLELKNWLEQHSEDSELDKVKFNYYLINKSPWSCLDDNEAFLSTADSAIKLAKEAMKPVSGWEGLKFRTAFPQSKPQGANFYPPDMDRQEFDLWKSTLPKDQQDSAVGYFTVIRRPKDSFFSNMPSHMELSTVNQLCNVKSFNAHNLLIVPYSIEYESYLKDAAGLLHKAGNVADTPSLKRLLKAKGDAFLSNDYYESDIAWMELDSDIDVTIGPYETYEDTLYGYKATFEAFVGIRDEVATSQIKLFSDHLQELENNLPLDDKYKSKYVAAAPIRVIQLIYNSGDVKGPQTVAFNLPNDERIVEERGTAMVMLKNVAEAKFRSILLPITDTCISEEQKQYVDFESMFTHTVCHECCHGIGPHTIELPNGKQSTVRMELQELHSALEEAKADIVGLWALQHLVDQGFLSKSLSKSMYVSFLAGCFRSIRFGLQEAHGKGQALQFNWIYENGGFVMHSNGSFSVDFTKVQGAVESLSREVMTIQAKGDKPAAKLFLDKYATTTHPLQQALSKLETIQVPVDIAPSFTIINQLLS
Q8L831______________EEHFDVLTKSGEKTGVSKPRGEVHRDGDYHRAVHVWIFVETTQQLLLQLRSDDKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGVKLPKDAFEKIFVFLQECVTNDGKFINNEFNDVYLVTILHPIPLEAFTLQKEEVSAVKYVPYEEYRNFLSKEDPAYVPYDVNGEYGKLFDIIRQRCQVNTEARSLSLQKQLQRYSPVTLEAKLTELSEADQKALGLIVKAAKIMDDIFYEQVWNSNPALRDWLKDHANASKLDKLKWDYFTINKSPWSSLDENEAFLSTADSAVKLLPGATKAIAGWKGLEYRAAFPVTKPPGANFYPPDMDKMEFTLWLNGLTEEQKHAATGFFSVIKRRSEANL-DASDHLASST-KKLPDSNS----DLYSIPYSEIYRPFLKKASEFLQKAGDLVSSPSLKKLLHSKAEAFLSNEYYESDIAWMDLDSKLDITIGPYETYEDEIFGYKATFETFIGIRDDKATADLKLFGDNLKLLEDNLPLESVYKSTDVSAAPIRVIQLIYNSGDVKGPQTVAYNLPNDEKIVKDRGTSMVMLKNVQEAKFEHILKPIAEITISKEQRGLVDFDSFFTHTICHECCHGIGPHTITLPGGQTSTVRKELQEVHSAMEEAKADIVGLWALKFLITKGLLSKSMVESMYVSFLAGCFRSIRFGLTEAHGKGQALQFNYLYEKGAFVFHEDSTFSVDFAKIEGAVESLSHEILTIQGKGDKNAATLLLNKYCTITGPLKTALENLERVKVPVDISPTFPLAEALMN

SNPs (tot: 73)

Position	A %	C %	G %	T %	Probability
463	33		66		0.997452
618	12	87			0.992554
620		12		87	0.992554
621	75			25	1.0
625	12			87	0.992554
628	12	87			0.992554
629	87	12			0.992554
630	87			12	0.992554
633	87			12	0.992554
634			87	12	0.992554
635			12	87	0.992554
641	12		87		0.992554
732			85	14	0.993533
788			83	16	0.994512
868		33		66	0.997452
1016		77	22		0.999999
1017		22		77	0.999999
1018	77			22	0.999999
1063		20		80	0.999996
1093			18	81	0.999994
1144		81		18	0.999994
1147	76		23		1.0
1164		15		84	0.999986
1183	23		76		1.0
1192		75		25	1.0
1215	10		90		0.90298
1242		88		11	0.923564
1253		25		75	0.996473
1274		75		25	0.996473
1304	75			25	0.996473
1344	83		16		0.994512
1345		83	16		0.994512
1346			16	83	0.994512
1357		16	83		0.994512
1361	83	16			0.994512
1378	20		80		0.995493
1501		88		11	0.923564
1503	11		88		0.923564
1505	11	88			0.923564
1506			88	11	0.923564
1507			88	11	0.923564
1516	87		12		0.992554
1686	11		88		0.923564
1687		11	88		0.923564
1690	88			11	0.923564
1926	16		83		0.994512
1996		85		14	0.993533
2090	85		14		0.993533
2106	85		14		0.993533
2153	20		80		0.995493
2182	83		16		0.994512
2185	16	83			0.994512
2189	16			83	0.994512
2190	83			16	0.994512
2200			14	85	0.993533
2247		14		85	0.993533
2335		85		14	0.993533
2369	71		28		1.0
2440			90	10	0.90298
2441		90	10		0.90298
2442	88		11		0.923564
2493		22		55	0.999999
2535	10		90		0.90298
2543		12	87		0.992554
2607		85		14	0.993533
2683		12		87	0.992554
2685	87	12			0.992554
2736		87		12	0.992554
2742	87		12		0.992554
2745			87	12	0.992554
2831		80		19	1.0
2854	27		72		1.0
2871	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain