SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1346

Length: 2998 nt

UniGene Fasta

>sp_v3.0_unigene1346
CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGGTATGATCCGTGTGAGTTTCATTCCCCTTATAATGGCTACCTACGCGGAAACATTATACGGAAGCCCGATTTTGTCCGTATCAGGATTCGACCTGTGGTCGGCTTCTTAATGAACTTCTGTGAAATAGCCTAGCAGCCGTTTGCAGGGGGGATTTATAGCGTTTGTGTTTTGCACTAAAGGATCACGCGGTAGCGATCAGTAATATCATATGTAGAGAATGCGTAGGGGTTGCTGCAATGGGTGGACCTCCGGGTTCCTGGATTCGACTGTTAATCGACTTCTGAAGAAGTATGAATGGCGTCTTTGGTTGGACGGGGGTTTCCATTTGTCGCCGAGGATTAAAGGAATGAAATTAAGGAGGTACCTGGCTCGATTCCGGGCGCAGGCTTCGAGATGGCGGTGGAAGGCTTGGCCAAGGCAGATATGGCCGAGCGATAAAGGCCCGGAGTTTCATGATACTCCTGGGGTTATCCTAACTAAGCTGAATCCTGGAAAATTTAGCCCTGATAACCCCAGGGTTTTCAGCTATGCGGAGCTCTACATCGCCACCAAGGGTTTCTGCAAGGATGAGCTGCTCGGAAGCGGGGGTTTCGGTCGGGTTTACAAGGCGGTTTTGCCCAGCGATGGCTCTATTGTGGCCGTGAAATGTCTTTCCGAGAACGGCGAGCGCAGCAGCCTGGAGAAGACCTTTGAGGCCGAGCTCGCGGCCGTTGGGCAGCTGCGGCACAAGAATCTGGTGTCGCTCAAGGGCTGGTGCTTTGAAGAACAAGAACTTCTTTTGGTCTATGATTACATGCCTAATTCCAGCCTCGACAAGATTTTATTCGTCCGAAATGGCCCGGTTCTTGAATGGCGGAGGCGTTACAAGATCGTTGCGGGGCTCGCCGCGGCGTTATTTTATTTGCATGAGCAGCTGGAAACGCAGATCATTCACAGAGATGTGAAGGCCAGCAATGTGATGCTCGACTCGGGATTTAACGCCCGTCTTGGCGACTTCGGCCTCGCGCGCTGGCTTGAGCATGCCGTCGATCAGGGTTTCCAATTCCATGGAGACGCGCCGGGAAATAAAAGATATAATAACAGTTCCAACAGGCATTTCAGGCTGTCGGAAACGAGCCGAATTGGTGGCACGATCGGGTATGTTTCGCCGGAGAGTTTGCAGAAGCGGAGCAAACCAACGGCAAAATCAGATGTCTTCAGCTTCGGGATCGTGGCACTCGAGGTGGCCTCCGGTCGCCGGGCTATAGATTTAACTTTTCCGGATGAGCAGATCGTGCTGGTGGACTGGATCCGGGTTCTTTACGAGGAAAATAGACTTCTTGAAGCCGGCGACGGCAGGTTACCGGACGGTTATGGCCTTGAAGAAATGAGGCGGTTGCTGCAAATCGGACTTCTTTGCTCCTTAAACGATCCTTCGGCCCGGCCAACGACGAAGTGGATAATCCAGGCATTGGACGGAGACGTAGACGTTCCAGCGTTGCCGTCCTTCAAGGCTCTGCCATACTATGCATCGTTGTCTTCGGAGAGCTCCGAAAGCCTCAGCACCACCACGCAGAGCAATAAAGAAAAGCTATGGTCTGGCTCCTGCAAAGTCCACAGTCCGACCTCAAACAACGATAGCGCTACCTCAATTCGCTCCACGCCAACGGACTACGCTCAGCTTGTAGACGCACCGCGGGAGTTCACGCTACGGGAAATAATCGCTGCAACGGAGAGCTTCGGCGAGGGCAACATGGTTGCCGAGATGGACTTCGGCACGGCCTACCGTGGCGTGCTGCGGGATTCGAACGTGCGAATCTTAGTTAAACGCCTGGGGATGAAAACCTGCCCGGCGCTTCGTGCCCGTTTCGCGCACGAGCTCTCGAACCTCGGGCGCCTGCGCCACCGGAACCTGGTACAGCTCCGGGGCTGGTGCACCGAGAAGGGCGAAATCCTGGTCGTCTACGATTACCTGATGAACCGGTCGCTGAGCAAGATGCTGTGCCACAAGAAGGGCTTCGTGCTCGACTGGCCCAGCCGGTACAAGATCGTCAAGGGGCTCTCCGCGGCGCTGCTGTACTTGCACGAGGAATGGGAGGAGACCGTTGTCCATAAGGGCGTCACGGCGAGCAACGTCTTCCTGGATGCAGAACTGAGCCCTCGCCTCGGGGGCTTCGCGCTGGCGGAGTTCGTCGCCCATGGCGACAACGATCACCATGCCACCGGTGCTGTCCGTGGGATCTTCGGGTACATGTCCCCTGAATACGTGGCCTCGGGCAGGGCAACGACAGAGGCCGACGTTTTCAGCTTCGGGGTCGTGGTCCTGGAGGTTGTGTCTGGTAGAATGGCCGTCGATTTCCGGTTCCCCGCCGTTTTACTTGTTGATAAGATTAAACAGTTGGATAAAAAGGAAAGGCTAGTGGATGTGAGGCTGGAAGGCGAATTCGATCAAAAAGAAATGAACAGATTGCTTAACCTGGGTTTCCTTTGCACTCGCTTGGATTCGAAAGTGCGACCTACGATGAGGCAGGTTACTCATATTTTGGACGGCGATGACCGCTTGCTGACAACCCTGCTGTTACAAACAGAGAACCCACAGCCAGAATGGGAGTCGAACCTGGAAGAAACAGCTTTGTTGGTGAAGAGAATACAGGCTCTCGGCATACAGTGAGTCTTTACTATTTTGGGCAGCTGGAAAAACTTCATTGTTACAGAAGTTTTGATATTTGTAAATAAAGTCGTGCAGTGAAGGTAAGACAGAACCGAGTTCTTGATTGTGAGGTTAGTGTTTGGATTCCGAATATAAGTGACAGGATTTTGGCCATTTAGTCGTTATGTCTACTGCAATGTTTCAAATTATGTATAATTTCTGGCCATCATTAAACTGTTTGTAAGTTCGTTCACCTACCAGATTCATTATGGATCAAAAGATTAACAAGATTGAAATCAAGGTTCTGTGTTTTGACCTAAACTTGCTTTG

Ace file of the UniGene sp_v3.0_unigene1346

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein kinase [Arabidopsis thaliana] gb\|AAC04483.1\| putative protein kinase [Arabidopsis thaliana]	-	-	0.0	47%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	55%
Sma3	Kinase, putative	-	-	1.402e-25	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	1.071e-09	-
Sma3	Cyclin-dependent kinase.	EC:2.7.11.22	-	1.634e-12	-
Sma3		EC:2.7.11.3-	-	6.203e-07	-

Source	Gene names
Sma3	AT4g02410; AT4g02420; At1g15530; At2g32800; At2g32800/F24L7.6; At2g37710; At3g53380; At3g53810; At4g02410; At4g02420; At5g01540; At5g01550; At5g03140; At5g55830; At5g59260; AthlecRK3; F15A17_170; F24G16.10; F4P12_80; F5K20_110; F7A7.60; F7A7.70; GSVIVT000

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	seed germination	GO:0009845	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3		IPR001899	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Plastocyanin-like	IPR003245	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G32800.1	AP4.3A protein kinase family protein chr2:13916478-13919033 FORWARD LENGTH=851	49%
RefSeq	Arabidopsis thaliana	NP_180839.2	putative protein kinase [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002323983.1	predicted protein [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6GWG4

Fln msg: your sequence is longer than subject: 811 - 718

Fln protein: MRRGCCNGWTSGFLDSTVNRLLKKYEWRLWLDGGFHLSPRIKGMKLRRYLARFRAQASRWRWKAWPRQIWPSDKGPEFHDTPGVILTKLNPGKFSPDNPRVFSYAELYIATKGFCKDELLGSGGFGRVYKAVLPSDGSIVAVKCLSENGERSSLEKTFEAELAAVGQLRHKNLVSLKGWCFEEQELLLVYDYMPNSSLDKILFVRNGPVLEWRRRYKIVAGLAAALFYLHEQLETQIIHRDVKASNVMLDSGFNARLGDFGLARWLEHAVDQGFQFHGDAPGNKRYNNSSNRHFRLSETSRIGGTIGYVSPESLQKRSKPTAKSDVFSFGIVALEVASGRRAIDLTFPDEQIVLVDWIRVLYEENRLLEAGDGRLPDGYGLEEMRRLLQIGLLCSLNDPSARPTTKWIIQALDGDVDVPALPSFKALPYYASLSSESSESLSTTTQSNKEKLWSGSCKVHSPTSNNDSATSIRSTPTDYAQLVDAPREFTLREIIAATESFGEGNMVAEMDFGTAYRGVLRDSNVRILVKRLGMKTCPALRARFAHELSNLGRLRHRNLVQLRGWCTEKGEILVVYDYLMNRSLSKMLCHKKGFVLDWPSRYKIVKGLSAALLYLHEEWEETVVHKGVTASNVFLDAELSPRLGGFALAEFVAHGDNDHHATGAVRGIFGYMSPEYVASGRATTEADVFSFGVVVLEVVSGRMAVDFRFPAVLLVDKIKQLDKKERLVDVRLEGEFDQKEMNRLLNLGFLCTRLDSKVRPTMRQVTHILDGDDRLLTTLLLQTENPQPEWESNLEETALLVKRIQALGIQ*

Protein Length: 812

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGGTATGATCCGTGTGAGTTTCATTCCCCTTATAATGGCTACCTACGCGGAAACATTATACGGAAGCCCGATTTTGTCCGTATCAGGATTCGACCTGTGGTCGGCTTCTTAATGAACTTCTGTGAAATAGCCTAGCAGCCGTTTGCAGGGGGGATTTATAGCGTTTGTGTTTTGCACTAAAGGATCACGCGGTAGCGATCAGTAATATCATATGTAGAGA_-_ATGCGTAGGGGTTGCTGCAATGGGTGGACCTCCGGGTTCCTGGATTCGACTGTTAATCGACTTCTGAAGAAGTATGAATGGCGTCTTTGGTTGGACGGGGGTTTCCATTTGTCGCCGAGGATTAAAGGAATGAAATTAAGGAGGTACCTGGCTCGATTCCGGGCGCAGGCTTCGAGATGGCGGTGGAAGGCTTGGCCAAGGCAGATATGGCCGAGCGATAAAGGCCCGGAGTTTCATGATACTCCTGGGGTTATCCTAACTAAGCTGAATCCTGGAAAATTTAGCCCTGATAACCCCAGGGTTTTCAGCTATGCGGAGCTCTACATCGCCACCAAGGGTTTCTGCAAGGATGAGCTGCTCGGAAGCGGGGGTTTCGGTCGGGTTTACAAGGCGGTTTTGCCCAGCGATGGCTCTATTGTGGCCGTGAAATGTCTTTCCGAGAACGGCGAGCGCAGCAGCCTGGAGAAGACCTTTGAGGCCGAGCTCGCGGCCGTTGGGCAGCTGCGGCACAAGAATCTGGTGTCGCTCAAGGGCTGGTGCTTTGAAGAACAAGAACTTCTTTTGGTCTATGATTACATGCCTAATTCCAGCCTCGACAAGATTTTATTCGTCCGAAATGGCCCGGTTCTTGAATGGCGGAGGCGTTACAAGATCGTTGCGGGGCTCGCCGCGGCGTTATTTTATTTGCATGAGCAGCTGGAAACGCAGATCATTCACAGAGATGTGAAGGCCAGCAATGTGATGCTCGACTCGGGATTTAACGCCCGTCTTGGCGACTTCGGCCTCGCGCGCTGGCTTGAGCATGCCGTCGATCAGGGTTTCCAATTCCATGGAGACGCGCCGGGAAATAAAAGATATAATAACAGTTCCAACAGGCATTTCAGGCTGTCGGAAACGAGCCGAATTGGTGGCACGATCGGGTATGTTTCGCCGGAGAGTTTGCAGAAGCGGAGCAAACCAACGGCAAAATCAGATGTCTTCAGCTTCGGGATCGTGGCACTCGAGGTGGCCTCCGGTCGCCGGGCTATAGATTTAACTTTTCCGGATGAGCAGATCGTGCTGGTGGACTGGATCCGGGTTCTTTACGAGGAAAATAGACTTCTTGAAGCCGGCGACGGCAGGTTACCGGACGGTTATGGCCTTGAAGAAATGAGGCGGTTGCTGCAAATCGGACTTCTTTGCTCCTTAAACGATCCTTCGGCCCGGCCAACGACGAAGTGGATAATCCAGGCATTGGACGGAGACGTAGACGTTCCAGCGTTGCCGTCCTTCAAGGCTCTGCCATACTATGCATCGTTGTCTTCGGAGAGCTCCGAAAGCCTCAGCACCACCACGCAGAGCAATAAAGAAAAGCTATGGTCTGGCTCCTGCAAAGTCCACAGTCCGACCTCAAACAACGATAGCGCTACCTCAATTCGCTCCACGCCAACGGACTACGCTCAGCTTGTAGACGCACCGCGGGAGTTCACGCTACGGGAAATAATCGCTGCAACGGAGAGCTTCGGCGAGGGCAACATGGTTGCCGAGATGGACTTCGGCACGGCCTACCGTGGCGTGCTGCGGGATTCGAACGTGCGAATCTTAGTTAAACGCCTGGGGATGAAAACCTGCCCGGCGCTTCGTGCCCGTTTCGCGCACGAGCTCTCGAACCTCGGGCGCCTGCGCCACCGGAACCTGGTACAGCTCCGGGGCTGGTGCACCGAGAAGGGCGAAATCCTGGTCGTCTACGATTACCTGATGAACCGGTCGCTGAGCAAGATGCTGTGCCACAAGAAGGGCTTCGTGCTCGACTGGCCCAGCCGGTACAAGATCGTCAAGGGGCTCTCCGCGGCGCTGCTGTACTTGCACGAGGAATGGGAGGAGACCGTTGTCCATAAGGGCGTCACGGCGAGCAACGTCTTCCTGGATGCAGAACTGAGCCCTCGCCTCGGGGGCTTCGCGCTGGCGGAGTTCGTCGCCCATGGCGACAACGATCACCATGCCACCGGTGCTGTCCGTGGGATCTTCGGGTACATGTCCCCTGAATACGTGGCCTCGGGCAGGGCAACGACAGAGGCCGACGTTTTCAGCTTCGGGGTCGTGGTCCTGGAGGTTGTGTCTGGTAGAATGGCCGTCGATTTCCGGTTCCCCGCCGTTTTACTTGTTGATAAGATTAAACAGTTGGATAAAAAGGAAAGGCTAGTGGATGTGAGGCTGGAAGGCGAATTCGATCAAAAAGAAATGAACAGATTGCTTAACCTGGGTTTCCTTTGCACTCGCTTGGATTCGAAAGTGCGACCTACGATGAGGCAGGTTACTCATATTTTGGACGGCGATGACCGCTTGCTGACAACCCTGCTGTTACAAACAGAGAACCCACAGCCAGAATGGGAGTCGAACCTGGAAGAAACAGCTTTGTTGGTGAAGAGAATACAGGCTCTCGGCATACAGTGA___GTCTTTACTATTTTGGGCAGCTGGAAAAACTTCATTGTTACAGAAGTTTTGATATTTGTAAATAAAGTCGTGCAGTGAAGGTAAGACAGAACCGAGTTCTTGATTGTGAGGTTAGTGTTTGGATTCCGAATATAAGTGACAGGATTTTGGCCATTTAGTCGTTATGTCTACTGCAATGTTTCAAATTATGTATAATTTCTGGCCATCATTAAACTGTTTGTAAGTTCGTTCACCTACCAGATTCATTATGGATCAAAAGATTAACAAGATTGAAATCAAGGTTCTGTGTTTTGACCTAAACTTGCTTTG

Fln Alignment:

Contig1346___DNPRVFSYAELYIATKGFCKDELLGSGGFGRVYKAVLPSDGSIVAVKCLSENGERSSLEKTFEAELAAVGQLRHKNLVSLKGWCFEEQELLLVYDYMPNSSLDKILFVR--NGPVLEWRRRYKIVAGLAAALFYLHEQLETQIIHRDVKASNVMLDSGFNARLGDFGLARWLEHAVDQGFQFHGDAPGNKRYNNSSNRHFRLSETSRIGGTIGYVSPESLQKRSKPTAKSDVFSFGIVALEVASGRRAIDLTFPDEQIVLVDWIRVLYEENRLLEAGDGRLPDG-YGLEEMRRLLQIGLLCSLNDPSARPTTKWIIQAL--DGDVDVPALPSFKALPYYAXXXXXXXXXXXXXXQSNKEKLWSGSCKVHSPTSNNDSATSIRSTPTDYAQLVDAPREFTLREIIAATESFGEGNMVAEMDFGTAYRGVLRDSNVRILVKRLGMKTCPALRARFAHELSNLGRLRHRNLVQLRGWCTEKGEILVVYDYLMNRSLSKMLCH----KKGFVLDWPSRYKIVKGLSAALLYLHEEWEETVVHKGVTASNVFLDAELSPRLGGFALAEFVAHGDNDHH----ATGAVRGIFGYMSPEYVASGRATTEADXXXXXXXXXXXXXXRMAVDFRFPAVLLVDKIKQLDKK----ERLVDVRLEGEFDQKEMNRLLNLGFLCTRLDSKVRPTMRQVTHIXXXXXXXXXXXXXXXENPQPEWESNLEETALLVKRIQALGIQ
F6GWG4______________NNPRIFSFSELYIGSNGFCEDEVLGSGGFGKVFRAVLPSDGTVVAVKCVAEKGE--PFEKTFVAELVAVAQLRHRNLVRLRGWCVHEEQLLLVYDYMPNRSLDRILFRRPENSLLLGWERRRRIVGGLAAALYYLHEQLETQIIHRDVKTSNVMLDSHYNARLGDFGLARWLEHEIEI----------ETKTNSIRHHQFRLAETTRIGGTIGYLPPESFQKRSMTTAKSDVFSFGIVVLEVVTGRRAVDLTYPDDQIILLDWIRRLSDEGKLLQVGDNRLPDGSYRLSDMERLIHLGLLCTLHNPHSRPNMKWIVETLSSQSSTRLPALPSFQSHPLYISLSSPTTGETIYATAEN------------GRITETNSSNSSRRQQSSIFPMVQTPQEISYKEIASATNNFSESQRAAELDFGTAYHGFL-DNGHHVLVKRLGMKTCPALRARFSNELQNLGRLRHRNLVQLHGWCTEQGEMLVVYDYLSNRLLSHLLFHLDNKKVHSTLHWRHRYNIIKSLASAILYLHEEWDEQVIHRNITSSAIIIDADMNPRLSSFALAEFLTRNEHGHHQVTDPTRSVRGIFGYMSPEYMESGEATPMADVYSFGMVVLEVVTGQMAVDFRWPGVLLVKRVRELAERKKPLEEMADWRLDGEHDQEELVRLIKLGMACTRSKPELRPSMGQIVSILDGNDKFFMEERQNKER-REEWKQRNACSLSLIKRIQALGIQ

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1613	16	83			0.994512
1615	83		16		0.994512
1616			16	83	0.994512
1642	16			83	0.994512
1939	66		33		0.997452
2173	16	83			0.994512
2786		90		10	0.90298
2834		89	10		0.999919
2835	89		10		0.999919

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain