SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1344

Length: 2002 nt

UniGene Fasta

>sp_v3.0_unigene1344
GAAAATACAGATTATAATTCAAAAAGAAATCGCAATAAAGGAAGAGATTCACTTCTGGAAGATGCTATGCATATATTAGAAAATGATAGAACCACTACTTCAAATGTAGAATCGGTAGGGAAGAATCACATTGACTATTTCGAAGACACAAATGATCGTAAAAAGGAGAAATTTACTTTGGGTAAAGCTTTGGTGCAAGAGCAGCTGTCAGGAATCAATGGGTCGGAGCATCAATCAGAAACTTTTGGAAGGATGAAGATATCAGATGCTCCAGAACTAGGTGACTCACCTTTAATCAATCCAGTGGTAGCACTCGGGGTCAATGTTAATGAAGAGAGAGTAGCAGATTGGCTCTGGACACTTCACAGGATTGTTGTGGATGTTGTCAGAACAGACAGACATCTTGAATTCTATGGAGATGCAAAAAACATGGCTCGAATGTCAGATATCCTTGCTGTATATGCCTGGGTGGATCCCACGACTGGTTATTGCCAAGGTATGAGTGATTTGTTATCTCCATTCATTGTACTTTTTGAGGATGATGCGGATGCATTCTGGTGCTTTGAGAGTCTTCTCCGAAGAATGCGACCAAATTTCCAGATGGAAGGTCCTGTTGGTGTGATGAAACAATTAGAAGCCCTGGGAAGAATATTGCAGCTGACTGACATCCAATTATTCAAGCACTTGGCTCAGATTGGCGCAGAGAGTCTTCTCTTTGCATTTCGAATGTTGCTTGTCCTCTTTCGCCGGGAGTTGTCATTCGATGATGCACTTTGTATGTGGGAGATGATGTGGGCTGCTGATTTTGATGAAGCTATGTCATGGGCATTGGAAAATAATTGCCTTGAACCACTGGTCCTGAGCCCTCCAAACACTTTGCATAGAGATACACACGTAGAATATGGAGAAAATACCCCTTGTTCAAAGAGTGATCAGTCTGAACAACTTGATGCAGATATTTCAGTTTCTGGTAACAGTGATGCCAAATATTTTTCTAGAAGCCCATTATGTGGCCTGAGACCAGGCAATTTCTGGCCTAAACATGGCCAGCAACATATTTGTACTATGAGTTCACTCCTCAAGAAAAATGGGGATGATGAGCTGTCTGTCTTTTGTGTAGCAGCCATTCTTGTCCTTAATCGGTCAAAGTTCATCAAGGAGATTCATTCGATGGATGATGCCATTAAGATGTTCAATGACATGCCCTTTGAAATTAAGGTGAAAAGATGTATACGAACAGCCATTAAACTGCGGAAAAAATATGTCCATAAGTTGACCAAGAAAAGAGGAATCGGAATATTATCAGCTAAACAGTCCTCATGAGTGATAATGAATGGTGTCAAATAAGGTGCCTATATTATTTTGTCCGTCTGAATAAACATGAGTGGTGAGGATGATGCCTTCTTCAGATAAGGGATTGTGGGATTGGATGTCATCTACATCAACCACTAAGATTCTGTTTTGCAGCTTTGTATTTTCTGAACTATTGAATTGAGTTGCCCAAGCATTCAGACTATATTACTTAAGCAGTTTAGAAGTAGTTCACTGAATGTTCGGAGGATTGGTAGAGGCAGGGTATGGAACTGACATTATTTCGAGGTCGTGTAGATTTATATGTATGGAAAAGGCCTTGGGTTGCAGGTATCCGGGTTATTCACAGATAAATCTTGGAGACCTGGATACATTTTCCAGAAATTCTGTAAGCCACGAGCTGTAAGATCTAATTTTCCGCTTCTGTATTTTAACTCTTTCAGCTTTGTATTGCTCCTCTGTTGCTCTAAACTGTTGGTTGTTGTTGTTATGGCTTCCATGTATTGGATAAGAACATGGTGCATATCACTTTTTTTGAGAAATTGGCCTGGAAAGTTAAGAACAAGCATTAGACATATGCTGTTCATTCCAACTGATTTTCTAAATGATCCGGGAAATTTGTAAGTTTAGTTGAGTCCAACATGTGATGATATTCACAAAATATTCAAAATGATCCAAAAGTTGTTTCTAC

Ace file of the UniGene sp_v3.0_unigene1344

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative GTPase-activating protein [Oryza sativa Japonica Group] dbj\|BAE79746.1\| putative GTPase-activating protein [Oryza sativa Japonica Group] gb\|EEC69756.1\| hypothetical protein OsI_00002 [Oryza sativa Indica Group] gb\|EEE53688.1\| hypothetical protein	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Putative GTPase activating protein	-	-	3.591e-08	-

Source	Gene names
Sma3	At2g43490; At3g59570/T16L24_120; At5g24390; At5g41940; At5g53570; GSVIVT00000523001; GSVIVT00034596001; GSVIVT00034597001; GSVIVT00034607001; GSVIVT00037201001; LOC_Os10g37410; OJ1531_B07.10; OSJNBa0076F20.7; OSJNOa264G09.1; Os01g0100100; Os08g0547200; Os

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	Rab GTPase activator activity	GO:0005097	Molecular Function	-
Sma3	regulation of Rab GTPase activity	GO:0032313	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Rab-GTPase-TBC domain	IPR000195	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G43490.1	Ypt/Rab-GAP domain of gyp1p superfamily protein chr2:18055106-18058179 REVERSE LENGTH=745	48%
RefSeq	Arabidopsis thaliana	NP_001118516.1	RAB GTPase activator protein [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002309776.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR92

Fln msg:

Fln protein: ENTDYNSKRNRNKGRDSLLEDAMHILENDRTTTSNVESVGKNHIDYFEDTNDRKKEKFTLGKALVQEQLSGINGSEHQSETFGRMKISDAPELGDSPLINPVVALGVNVNEERVADWLWTLHRIVVDVVRTDRHLEFYGDAKNMARMSDILAVYAWVDPTTGYCQGMSDLLSPFIVLFEDDADAFWCFESLLRRMRPNFQMEGPVGVMKQLEALGRILQLTDIQLFKHLAQIGAESLLFAFRMLLVLFRRELSFDDALCMWEMMWAADFDEAMSWALENNCLEPLVLSPPNTLHRDTHVEYGENTPCSKSDQSEQLDADISVSGNSDAKYFSRSPLCGLRPGNFWPKHGQQHICTMSSLLKKNGDDELSVFCVAAILVLNRSKFIKEIHSMDDAIKMFNDMPFEIKVKRCIRTAIKLRKKYVHKLTKKRGIGILSAKQSS*

Protein Length: 442

Fln nts: GAAAATACAGATTATAATTCAAAAAGAAATCGCAATAAAGGAAGAGATTCACTTCTGGAAGATGCTATGCATATATTAGAAAATGATAGAACCACTACTTCAAATGTAGAATCGGTAGGGAAGAATCACATTGACTATTTCGAAGACACAAATGATCGTAAAAAGGAGAAATTTACTTTGGGTAAAGCTTTGGTGCAAGAGCAGCTGTCAGGAATCAATGGGTCGGAGCATCAATCAGAAACTTTTGGAAGGATGAAGATATCAGATGCTCCAGAACTAGGTGACTCACCTTTAATCAATCCAGTGGTAGCACTCGGGGTCAATGTTAATGAAGAGAGAGTAGCAGATTGGCTCTGGACACTTCACAGGATTGTTGTGGATGTTGTCAGAACAGACAGACATCTTGAATTCTATGGAGATGCAAAAAACATGGCTCGAATGTCAGATATCCTTGCTGTATATGCCTGGGTGGATCCCACGACTGGTTATTGCCAAGGTATGAGTGATTTGTTATCTCCATTCATTGTACTTTTTGAGGATGATGCGGATGCATTCTGGTGCTTTGAGAGTCTTCTCCGAAGAATGCGACCAAATTTCCAGATGGAAGGTCCTGTTGGTGTGATGAAACAATTAGAAGCCCTGGGAAGAATATTGCAGCTGACTGACATCCAATTATTCAAGCACTTGGCTCAGATTGGCGCAGAGAGTCTTCTCTTTGCATTTCGAATGTTGCTTGTCCTCTTTCGCCGGGAGTTGTCATTCGATGATGCACTTTGTATGTGGGAGATGATGTGGGCTGCTGATTTTGATGAAGCTATGTCATGGGCATTGGAAAATAATTGCCTTGAACCACTGGTCCTGAGCCCTCCAAACACTTTGCATAGAGATACACACGTAGAATATGGAGAAAATACCCCTTGTTCAAAGAGTGATCAGTCTGAACAACTTGATGCAGATATTTCAGTTTCTGGTAACAGTGATGCCAAATATTTTTCTAGAAGCCCATTATGTGGCCTGAGACCAGGCAATTTCTGGCCTAAACATGGCCAGCAACATATTTGTACTATGAGTTCACTCCTCAAGAAAAATGGGGATGATGAGCTGTCTGTCTTTTGTGTAGCAGCCATTCTTGTCCTTAATCGGTCAAAGTTCATCAAGGAGATTCATTCGATGGATGATGCCATTAAGATGTTCAATGACATGCCCTTTGAAATTAAGGTGAAAAGATGTATACGAACAGCCATTAAACTGCGGAAAAAATATGTCCATAAGTTGACCAAGAAAAGAGGAATCGGAATATTATCAGCTAAACAGTCCTCATGA___GTGATAATGAATGGTGTCAAATAAGGTGCCTATATTATTTTGTCCGTCTGAATAAACATGAGTGGTGAGGATGATGCCTTCTTCAGATAAGGGATTGTGGGATTGGATGTCATCTACATCAACCACTAAGATTCTGTTTTGCAGCTTTGTATTTTCTGAACTATTGAATTGAGTTGCCCAAGCATTCAGACTATATTACTTAAGCAGTTTAGAAGTAGTTCACTGAATGTTCGGAGGATTGGTAGAGGCAGGGTATGGAACTGACATTATTTCGAGGTCGTGTAGATTTATATGTATGGAAAAGGCCTTGGGTTGCAGGTATCCGGGTTATTCACAGATAAATCTTGGAGACCTGGATACATTTTCCAGAAATTCTGTAAGCCACGAGCTGTAAGATCTAATTTTCCGCTTCTGTATTTTAACTCTTTCAGCTTTGTATTGCTCCTCTGTTGCTCTAAACTGTTGGTTGTTGTTGTTATGGCTTCCATGTATTGGATAAGAACATGGTGCATATCACTTTTTTTGAGAAATTGGCCTGGAAAGTTAAGAACAAGCATTAGACATATGCTGTTCATTCCAACTGATTTTCTAAATGATCCGGGAAATTTGTAAGTTTAGTTGAGTCCAACATGTGATGATATTCACAAAATATTCAAAATGATCCAAAAGTTGTTTCTAC

Fln Alignment:

Contig1344___VRTDRHLEFYGDAKNMARMSDILAVYAWVDPTTGYCQGMSDLLSPFIVLFEDDADAFWCFESLLRRMRPNFQMEGPVGVMKQLEALGRILQLTDIQLFKHLAQIGAESLLFAFRMLLVLFRRELSFDDALCMWEMMWA
B8LR92______________LKNDEHLE-PSRKHHAARLVAILETYALYDYDIGYCQGMSDLLSPFVALMDDDYEAFWCFVHFMRIARDNFRLDES-GIRRQLDIVAKIIKAKDPQLYKHLQKLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWA

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
548		14	85		0.993533
549	85		14		0.993533
553	85	14			0.993533
557			14	85	0.993533
559		14	85		0.993533
563	14			85	0.993533
564		14		85	0.993533
566		14	85		0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
1789	1800	GTT GTT GTT GTT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain