SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1334

Length: 2312 nt

UniGene Fasta

>sp_v3.0_unigene1334
TCATCAGTTCACAAGACCAACACTCGTGGTACGAAAGATCCGAATGACTTTACCCAAACTCCCAGACTCCCACATGGAGCTCCAGCTTGCGTGCCCAAAGAGCACAGTGATTCTCCCATGTATTCCTTTACTGAGGCCTTAAAAGAATGCCATAGCAAGAAATTGCAGACAAGGTTTGATGGAAATAAAGGAGGAAGATGCGCATTTGCAGAGTATGAAGATTTACTGAAGGATTTCACTGTGATCTCAACGCCTCACAGATTCAAGGAAAGGAAACGCCCGGCTTCAATGGACTTGATTCAAGAGATTAATTCTAGTTCTAGTTCTAGAGATGGATATAATTATTCTCCTAAAATCGGGAGCGTCAGAGAATCCCCAAGCACTGATGCAGAAAATCCAGTGAGTCAAAGCCTAAATGAATCACACCGTACTTATGATAAAGAGGTTTTGCATAATAAGCGCCACGACTCTCAGAACTCAGCTAGTGGCAGAGTCCGGACTTTCCCAAGTCCAGGCACTCCATCAACGTCGACACATTCAAACTCATGGAGTTTGGAAAGAGTTTCAATGGCTGCCAATTCTTACAGAAATGGGCTATTGGCTTGCCACAATACTATGTACACAAAGAACATCAAGAGTAGTTTGCCATCAAAATGGGATGATGCAGAGAAATGGTTATGCAGTCCTGCTTCAGGTGACAATATAGCCAATACAGTACACAAAAATGGAGAGTATTCTCGCAAACCCAAGTCTAAGAGTGGGCCTCTTGTAGCAATGGGACTTGCTTCACCTGCTAGGCCATTATATTATAGTAAGAACAGGGCATCCACTATCCAAGCTATCCATCAATACTCCCCACGCAGTGCTTTAGAGAATGGACCTATAGGGTCAGGAATCAGAAGATCTGGTAGCAGTGCTGCTGTTTCTGATCATTTGCAGGGGCAAAGTTCATCAGATAATTCTAGCTGTTTGCCTCTAGATAGTGGGGATACTAATTTCGGAGTGCAGTCCTGTATAATCCGTTCTGCTAGTGTGGACGGATGGTCATTCCAGGCCAAAGAGTTTCCCATGATCGAAACGAGAAGCGTACAAGTAGCACCTGCAAAACATGAGAACTGTATTCCCAAGCTTCCTGAACCGAAAACCAGGAATTCAGGCCCTCAGATGTCGCTAAACAGAAGCCAGTCTACAAGAGAAGTTCTGCCAGTGCCCCTCTTCAGTCAAGATAAATATGCTGATATGGTTTTGGAGACTCCACGATTATTTGGATCAACTTCTTCTATTAAGCAAGATATGGTCGTTCAGAGTCTGGAACATGAGGACTGCGAATCACTATCCATATCCATGAAAGATGCAGCCACAGAGATATCCCCAACTGTTTCAAGAAGAGACATGGCAACTCAGATAACTCCTCTTGCAAGTTCAAGGACATCTCGCTGTACAACTCCACAGCAGTGTAACTCTCCTGCCAGGCACAACACTCCTGCTAGATCGGACTCTGGAAATGGAAGCAATTCCACGTTAGATGTTTTAGAATTGCCAACTTGTCATTTAACCAAACTGGAAATTGGCAATGGAGACATCAATTATAATCATAACTATAAGCATCCAGATCAAGTCTTCACCCCCAACCCAGGTAAAAAGCAGATTAATTCAAGCTGGAGAACAAGAGAGGAAGAGGAAGAAGAAAGCTCAAATTGCCTTAGGTATTTTGAGAGTGGAGACTGGAGGAAGAATATCGTTGAAGCAAGGGCTACTGCATGGGAAGAAGCGGAACGTGCAAAGTGCTTGGCCAGGTTCAAAAGAGAGGAAGCGAAGATTACGGCGTGGGAGAACCATCAGAAAGCAAAAGCTGAAGCAGAATTGAGAAAACTTGAGGTGAAACTGGAGAAAGTGAGGTCACAAACAACGGAGAAGATCATGAACAAGGTGGCAACAGCTCATAAGAAGGCAGAAGACATGAGAGCTGCCATAGCTGTACAGCAAGCAGAGCAATTGGCCAAGACCATGGACAGTGCTGCATCCGTACGGAAAAGTGGTCACGTTGGTACATTGGGCGCATGCTTTTCATTCTCATGCAATGTATGACACTTATTTAATTCCATTTAATTTTAACCCTGAGCGTGACAGAGTCTTGATGTAATCTTCAGAATTTAATTTAACTCTGAGTCTGGCCGAGTCTTAATGTATTTGTTTGTCAGACCTTTGAATAAGTCTGGTCTGATATAAAATATTCTTTATTTATATATATACTTTTTGCTCAATTAGAGGCAGGAACAATGGGCAATCCTCCTTTCATCGTAACTCGCCAC

Ace file of the UniGene sp_v3.0_unigene1334

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Remorin family protein [Arabidopsis thaliana] ref\|NP_001077869.1\| Remorin family protein [Arabidopsis thaliana] gb\|AAK60323.1\|AF385733_1 At2g02170/F5O4.6 [Arabidopsis thaliana] gb\|AAC97217.1\| expressed protein [Arabidopsis thaliana] gb\|AAO23587.1\| At2g021	-	-	3.0e-26	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%

Source	Gene names
Sma3	GSVIVT00034000001; PHYPADRAFT_57439;

Source	GOs	Term	Type	e value	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Remorin, C-terminal	IPR005516	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADM1

Fln msg: your sequence is longer than subject: 657 - 429

Fln protein: MYSFTEALKECHSKKLQTRFDGNKGGRCAFAEYEDLLKDFTVISTPHRFKERKRPASMDLIQEINSSSSSRDGYNYSPKIGSVRESPSTDAENPVSQSLNESHRTYDKEVLHNKRHDSQNSASGRVRTFPSPGTPSTSTHSNSWSLERVSMAANSYRNGLLACHNTMYTKNIKSSLPSKWDDAEKWLCSPASGDNIANTVHKNGEYSRKPKSKSGPLVAMGLASPARPLYYSKNRASTIQAIHQYSPRSALENGPIGSGIRRSGSSAAVSDHLQGQSSSDNSSCLPLDSGDTNFGVQSCIIRSASVDGWSFQAKEFPMIETRSVQVAPAKHENCIPKLPEPKTRNSGPQMSLNRSQSTREVLPVPLFSQDKYADMVLETPRLFGSTSSIKQDMVVQSLEHEDCESLSISMKDAATEISPTVSRRDMATQITPLASSRTSRCTTPQQCNSPARHNTPARSDSGNGSNSTLDVLELPTCHLTKLEIGNGDINYNHNYKHPDQVFTPNPGKKQINSSWRTREEEEEESSNCLRYFESGDWRKNIVEARATAWEEAERAKCLARFKREEAKITAWENHQKAKAEAELRKLEVKLEKVRSQTTEKIMNKVATAHKKAEDMRAAIAVQQAEQLAKTMDSAASVRKSGHVGTLGACFSFSCNV*

Protein Length: 658

Fln nts: TCATCAGTTCACAAGACCAACACTCGTGGTACGAAAGATCCGAATGACTTTACCCAAACTCCCAGACTCCCACATGGAGCTCCAGCTTGCGTGCCCAAAGAGCACAGTGATTCTCCC_-_ATGTATTCCTTTACTGAGGCCTTAAAAGAATGCCATAGCAAGAAATTGCAGACAAGGTTTGATGGAAATAAAGGAGGAAGATGCGCATTTGCAGAGTATGAAGATTTACTGAAGGATTTCACTGTGATCTCAACGCCTCACAGATTCAAGGAAAGGAAACGCCCGGCTTCAATGGACTTGATTCAAGAGATTAATTCTAGTTCTAGTTCTAGAGATGGATATAATTATTCTCCTAAAATCGGGAGCGTCAGAGAATCCCCAAGCACTGATGCAGAAAATCCAGTGAGTCAAAGCCTAAATGAATCACACCGTACTTATGATAAAGAGGTTTTGCATAATAAGCGCCACGACTCTCAGAACTCAGCTAGTGGCAGAGTCCGGACTTTCCCAAGTCCAGGCACTCCATCAACGTCGACACATTCAAACTCATGGAGTTTGGAAAGAGTTTCAATGGCTGCCAATTCTTACAGAAATGGGCTATTGGCTTGCCACAATACTATGTACACAAAGAACATCAAGAGTAGTTTGCCATCAAAATGGGATGATGCAGAGAAATGGTTATGCAGTCCTGCTTCAGGTGACAATATAGCCAATACAGTACACAAAAATGGAGAGTATTCTCGCAAACCCAAGTCTAAGAGTGGGCCTCTTGTAGCAATGGGACTTGCTTCACCTGCTAGGCCATTATATTATAGTAAGAACAGGGCATCCACTATCCAAGCTATCCATCAATACTCCCCACGCAGTGCTTTAGAGAATGGACCTATAGGGTCAGGAATCAGAAGATCTGGTAGCAGTGCTGCTGTTTCTGATCATTTGCAGGGGCAAAGTTCATCAGATAATTCTAGCTGTTTGCCTCTAGATAGTGGGGATACTAATTTCGGAGTGCAGTCCTGTATAATCCGTTCTGCTAGTGTGGACGGATGGTCATTCCAGGCCAAAGAGTTTCCCATGATCGAAACGAGAAGCGTACAAGTAGCACCTGCAAAACATGAGAACTGTATTCCCAAGCTTCCTGAACCGAAAACCAGGAATTCAGGCCCTCAGATGTCGCTAAACAGAAGCCAGTCTACAAGAGAAGTTCTGCCAGTGCCCCTCTTCAGTCAAGATAAATATGCTGATATGGTTTTGGAGACTCCACGATTATTTGGATCAACTTCTTCTATTAAGCAAGATATGGTCGTTCAGAGTCTGGAACATGAGGACTGCGAATCACTATCCATATCCATGAAAGATGCAGCCACAGAGATATCCCCAACTGTTTCAAGAAGAGACATGGCAACTCAGATAACTCCTCTTGCAAGTTCAAGGACATCTCGCTGTACAACTCCACAGCAGTGTAACTCTCCTGCCAGGCACAACACTCCTGCTAGATCGGACTCTGGAAATGGAAGCAATTCCACGTTAGATGTTTTAGAATTGCCAACTTGTCATTTAACCAAACTGGAAATTGGCAATGGAGACATCAATTATAATCATAACTATAAGCATCCAGATCAAGTCTTCACCCCCAACCCAGGTAAAAAGCAGATTAATTCAAGCTGGAGAACAAGAGAGGAAGAGGAAGAAGAAAGCTCAAATTGCCTTAGGTATTTTGAGAGTGGAGACTGGAGGAAGAATATCGTTGAAGCAAGGGCTACTGCATGGGAAGAAGCGGAACGTGCAAAGTGCTTGGCCAGGTTCAAAAGAGAGGAAGCGAAGATTACGGCGTGGGAGAACCATCAGAAAGCAAAAGCTGAAGCAGAATTGAGAAAACTTGAGGTGAAACTGGAGAAAGTGAGGTCACAAACAACGGAGAAGATCATGAACAAGGTGGCAACAGCTCATAAGAAGGCAGAAGACATGAGAGCTGCCATAGCTGTACAGCAAGCAGAGCAATTGGCCAAGACCATGGACAGTGCTGCATCCGTACGGAAAAGTGGTCACGTTGGTACATTGGGCGCATGCTTTTCATTCTCATGCAATGTATGA___CACTTATTTAATTCCATTTAATTTTAACCCTGAGCGTGACAGAGTCTTGATGTAATCTTCAGAATTTAATTTAACTCTGAGTCTGGCCGAGTCTTAATGTATTTGTTTGTCAGACCTTTGAATAAGTCTGGTCTGATATAAAATATTCTTTATTTATATATATACTTTTTGCTCAATTAGAGGCAGGAACAATGGGCAATCCTCCTTTCATCGTAACTCGCCAC

Fln Alignment:

Contig1334___LPVPLFSQDKYADMVLETPRLFGSTSSIKQDMVVQSL-EHEDCESLSISMKDAATEISPTVSRRDMATQITPLASSRTSRCTTPQQCNSPARHNTPARSDSGNGSNSTLDVLELPTCHLTKLEIGN--GDINYNHNYKHPDQVFTPNPGKKQINSSWRTRXXXXXXSSNCLRYFESGDWRKNIVXXXXXXXXXXXXXKCLARFKREEAKITAWENHQKAKAEAELRKLEVKLEKVRSQTTEKIMNKVATAHKKAEDMRAAIAVQQAEQLAKTMDSAASVRKSGHVG-TLGACFSFSC
D5ADM1______________LPSDVFMKDKFTDKVEPAPRY-----NVPELGKIQHYGKHEGFQS----MKDACTEVIPAVQHRDMGTEMTPLGSSRTSRCHTPVKNGSPARHNTPA-SRSALINSAGIDIGELEKCHFANLELQGLPSGIQFNSVDKSV--------------STWSSREEEEEDVSKSLRHFDMGDCKKSIVEIRAAAWEEAERSKCFTRYQREEARIEAWINLQGAKAEAETKKLEVKIEKMRSHLEEKLMKKMAGAHKRAEEWRAAAKAQHAEQILKSAERAERMRRDGNVPFNVSTCGCFSC

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
604			60	40	1.0
622		40		60	1.0
1496		16		83	0.994512
1543		33	66		0.997452
1594	25			75	0.996473
1595	75			25	0.996473
1596	75		25		0.996473
1751	25		75		0.996473
1752		75		25	0.996473
1753	75		25		0.996473
1754	75		25		0.996473
1776		71		28	1.0
1778			83	16	0.994512
1780	83			16	0.994512
1783	16			83	0.994512
1784		16	83		0.994512
1786	83			16	0.994512
1787	83			16	0.994512
1788	83		16		0.994512
1792		83		16	0.994512
1793		16		83	0.994512
1794	16			83	0.994512
1795		16	83		0.994512
1796			83	16	0.994512
1798	16	83			0.994512
1873	66		33		1.0
1927			80	20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
312	329	TTCTAG TTCTAG TTCTAG	18

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain