SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1307

Length: 2466 nt

UniGene Fasta

>sp_v3.0_unigene1307
GGTACAGCGGGTGTTGAAGGACATGGGATTTTAAAATGGGTATTCTGCAGAAGATCAGATCAATATAAGAAATTGAACATTGCTTGCGGCAACCCAATTAGGAAAATGGGCATTTAGTTCTTTGGAAATATGGATCTGTGTAGCCATCTTGGTTGATAGTTTTAATGGCTGGTTCATTCAGTTTTCCTGTTTCATTTTGGTCCCTGCTGATGGTATTTTTCACCTTGGATCTGCCCTACTGTTCATCCAGCGTAGCCCACCATAAGAACAAATGCAATGAGCGTTGTGGGTCCATAGCAATTCCCTACCCATTCTACCTGGACCCTGAGTGTGGATTTCCAGGCTTCAATCTGGAATGCTTAAACTCCACCCCCGTCGTAAATTTAGATGACAACAAATACAACGTTCTCAGTTTCTTATCAGACAGCTTTCTGATAGATCCTCTCAACTCATCATGCGAGCTCAATGTGAATTCTTTTAGTTTCAGGGGCAATAAGCACTATGGAATCTCCCTTGAAAACTTCCTTCAGCTCTCAGACTGTAGGAACTCCTCGGCCTGTCTTGTTGATTGCAATATACCTATTCAGCAAAATAACACAGAGTGTAAATACAATGCTACTTGCTGTTACCCTCTTTCCAATACCACACTCTGGCAGCTAGGTAACAGCATTTCAATCTTTGCAAAGTTCCACTGCAGTGCATTTAGCAGTTGGGTTCTCTCCAGTCCCTTTGCTCCCACTGAAAATGCTGAATATGGGCTGAAGATGGAGTGGGCTTTGCCGAGAAACTGCTCAAACATCGGGTGCTCGCCAAATGCAGTATGTGTGAAGGCAACCACCATCAAGGGCGGTGTTAGATGCCAGTGCAATCCTGGTTATGGAGGTGATGGATTTACAGATAAAGGAGCAGGATGTTTCAAAGTGTGTACTACAAAGGATGGTAGTATAGCATATGACAGAGAATGTGACAGCCAGAAATCTATTATAAAAATTGCTGTGTTATCTGCTGGAATATTAGCTACAGCAACCATTCTTGCAGGCCTTGTATTCCTTTGCATTGGTAAGGTATCGCAGGTATTCATCTTCTGAGATAAAAAGACATAGTGATCCAAGTCAACTTGCAAGCCTTCTTTCATTCCATGGTAAAGCGTGCACCACAAAATTGTTCACATACGCAGAGCTGGAGAGAGCTACAAAATGTTTTGCACCAAGTGAGAAACTAGGAAATGGTGCTTGTGGAACAGTTTATGCTGGAAAGCTGCCTGATGGATCCCTCGTGGCTGTAAAAAGAATACACTATGGAAGCACTCAAGGGACACAACAGATTATTAATGAAGTAAATGTCCTGTCAACTGTGAAACATTCAAATCTAGTACGACTTCTTGGTTGTTGCATTGAGATGGGTAGCCCACTCTTAGTCTATGAGTTTGTTCCAAATGGCACCTTGGCACAGCATCTGCAACGAGAGAGGGGCGAAGGTTTAAATTGGCCAACACGAATTAGTATTGCTACAGAAACTGCAAAAGCCATTGCATACCTACATTCGACAATGACTCCACCAATATATCATCGCGATATCAAGTCCAGTAATATTCTTCTAGATTATGATTTCAATGCAAAAGTTGCAGATTTTGGACTTTCAAGGCTAGGACTTCTAGATGGATCCCATATCTCCACTATTCCTCAAGGTACCCCTGGGTACCTTGATCCAGAGTATCATCAGAACTTCCATCTCTCAGATAAGAGTGATGTGTACAGCTTTGGTGTGGTTCTAATTGAATCGACGACACCTAGGAAGCCACTCAATTTTTCTCGTGACAAAAAAGAGGTTAATCTTGCTTCTCTTGCCATGTCAAAGAATTGGAATGCAACTGCCTTGATGAAATTATTGATCCCTTCCTCCAGGTTCACAAGCAACCTTTGCTCCGGGGACTGGTGCAAAGAGTTGCTGAGGTTGCATTTAGATGTTTGTCATTTGACAAAGATGCTAGACCTTCTATGATAGAAGTTGCAGAGGAACTTCTACTAATCAACAAAGATTGCATGCATGTGAGGACCCCCTCACCACAGGAGATCTTCAAATCAAGCTTTGAAAGTAAATTTCTGCAGAAGGTTAGCATGTCCCCCAGCTCTATTCAACCACCTTGGACAAGCGATGGTAGCTCATTGTCGGAGACTCTTCCAAATACAATCAAACATTGATATATTTAACTGATTTCTTGGACTTTAGGCATATCATGTGTAATTTTGAGGTGTTTATAAGCATAAGAAGAAGCCATTGTGTTGGTTTCCTTCTGTACTTTTCTTGATATACTGTTTATTGGAACATATTCTTTCTGGTTGGTTGTTGGGGGTTTGGTGGGGGGTGCATTATGTCTGAATCCTGGTGTTGATGTTGTATGCCTTTACCACCCTTAATTGCAAATGGATTAAGGTGATTTTCCAAAGGATTCTATTATCCGGTTCA

Ace file of the UniGene sp_v3.0_unigene1307

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WAK-like kinase n=1 Tax=Solanum lycopersicum RepID=Q6QLL5_SOLLC	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Sma3	Wall-associated kinase, putative	-	-	2.63e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	2.533e-06	-
Sma3	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	8.558e-35	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	1.057e-09	-

Source	Gene names
Sma3	AT5G37450; AT5G48740; At1g16120; At1g16130; At1g16150; At1g16260; At1g17910; At1g18390; At1g21210; At1g21230; At1g21250; At1g21270; At1g25390; At1g66880; At1g69730; At1g79670; At1g79680; At2g23450; At3g53840; At4g31100; At4g31110; At5g02070; At5g38210; At

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	cell surface receptor signaling pathway	GO:0007166	Biological Process	-
Sma3	oligosaccharide metabolic process	GO:0009311	Biological Process	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	cellular water homeostasis	GO:0009992	Biological Process	-
Sma3	response to zinc ion	GO:0010043	Biological Process	-
Sma3	response to nickel cation	GO:0010045	Biological Process	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	lateral root development	GO:0048527	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA polymerase II, heptapeptide repeat, eukaryotic	IPR000684	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	EGF-like calcium-binding	IPR001881	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	EGF-like domain	IPR006209	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR013091	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Wall-associated kinase	IPR013695	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EGF-like calcium-binding, conserved site	IPR018097	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Ribosomal protein S14, conserved site	IPR018271	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G23450.2	Protein kinase superfamily protein chr2:9988926-9991244 REVERSE LENGTH=708	58%
RefSeq	Arabidopsis thaliana	NP_565552.1	wall-associated receptor kinase-like 14 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002327085.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACS3

Fln msg: your sequence is longer than subject: 308 - 272

Fln protein: MAGSFSFPVSFWSLLMVFFTLDLPYCSSSVAHHKNKCNERCGSIAIPYPFYLDPECGFPGFNLECLNSTPVVNLDDNKYNVLSFLSDSFLIDPLNSSCELNVNSFSFRGNKHYGISLENFLQLSDCRNSSACLVDCNIPIQQNNTECKYNATCCYPLSNTTLWQLGNSISIFAKFHCSAFSSWVLSSPFAPTENAEYGLKMEWALPRNCSNIGCSPNAVCVKATTIKGGVRCQCNPGYGGDGFTDKGAGCFKVCTTKDGSIAYDRECDSQKSIIKIAVLSAGILATATILAGLVFLCIGKVSQVFIF*

Protein Length: 309

Fln nts: GGTACAGCGGGTGTTGAAGGACATGGGATTTTAAAATGGGTATTCTGCAGAAGATCAGATCAATATAAGAAATTGAACATTGCTTGCGGCAACCCAATTAGGAAAATGGGCATTTAGTTCTTTGGAAATATGGATCTGTGTAGCCATCTTGGTTGATAGTTTTA_-_ATGGCTGGTTCATTCAGTTTTCCTGTTTCATTTTGGTCCCTGCTGATGGTATTTTTCACCTTGGATCTGCCCTACTGTTCATCCAGCGTAGCCCACCATAAGAACAAATGCAATGAGCGTTGTGGGTCCATAGCAATTCCCTACCCATTCTACCTGGACCCTGAGTGTGGATTTCCAGGCTTCAATCTGGAATGCTTAAACTCCACCCCCGTCGTAAATTTAGATGACAACAAATACAACGTTCTCAGTTTCTTATCAGACAGCTTTCTGATAGATCCTCTCAACTCATCATGCGAGCTCAATGTGAATTCTTTTAGTTTCAGGGGCAATAAGCACTATGGAATCTCCCTTGAAAACTTCCTTCAGCTCTCAGACTGTAGGAACTCCTCGGCCTGTCTTGTTGATTGCAATATACCTATTCAGCAAAATAACACAGAGTGTAAATACAATGCTACTTGCTGTTACCCTCTTTCCAATACCACACTCTGGCAGCTAGGTAACAGCATTTCAATCTTTGCAAAGTTCCACTGCAGTGCATTTAGCAGTTGGGTTCTCTCCAGTCCCTTTGCTCCCACTGAAAATGCTGAATATGGGCTGAAGATGGAGTGGGCTTTGCCGAGAAACTGCTCAAACATCGGGTGCTCGCCAAATGCAGTATGTGTGAAGGCAACCACCATCAAGGGCGGTGTTAGATGCCAGTGCAATCCTGGTTATGGAGGTGATGGATTTACAGATAAAGGAGCAGGATGTTTCAAAGTGTGTACTACAAAGGATGGTAGTATAGCATATGACAGAGAATGTGACAGCCAGAAATCTATTATAAAAATTGCTGTGTTATCTGCTGGAATATTAGCTACAGCAACCATTCTTGCAGGCCTTGTATTCCTTTGCATTGGTAAGGTATCGCAGGTATTCATCTTCTGA___GATAAAAAGACATAGTGATCCAAGTCAACTTGCAAGCCTTCTTTCATTCCATGGTAAAGCGTGCACCACAAAATTGTTCACATACGCAGAGCTGGAGAGAGCTACAAAATGTTTTGCACCAAGTGAGAAACTAGGAAATGGTGCTTGTGGAACAGTTTATGCTGGAAAGCTGCCTGATGGATCCCTCGTGGCTGTAAAAAGAATACACTATGGAAGCACTCAAGGGACACAACAGATTATTAATGAAGTAAATGTCCTGTCAACTGTGAAACATTCAAATCTAGTACGACTTCTTGGTTGTTGCATTGAGATGGGTAGCCCACTCTTAGTCTATGAGTTTGTTCCAAATGGCACCTTGGCACAGCATCTGCAACGAGAGAGGGGCGAAGGTTTAAATTGGCCAACACGAATTAGTATTGCTACAGAAACTGCAAAAGCCATTGCATACCTACATTCGACAATGACTCCACCAATATATCATCGCGATATCAAGTCCAGTAATATTCTTCTAGATTATGATTTCAATGCAAAAGTTGCAGATTTTGGACTTTCAAGGCTAGGACTTCTAGATGGATCCCATATCTCCACTATTCCTCAAGGTACCCCTGGGTACCTTGATCCAGAGTATCATCAGAACTTCCATCTCTCAGATAAGAGTGATGTGTACAGCTTTGGTGTGGTTCTAATTGAATCGACGACACCTAGGAAGCCACTCAATTTTTCTCGTGACAAAAAAGAGGTTAATCTTGCTTCTCTTGCCATGTCAAAGAATTGGAATGCAACTGCCTTGATGAAATTATTGATCCCTTCCTCCAGGTTCACAAGCAACCTTTGCTCCGGGGACTGGTGCAAAGAGTTGCTGAGGTTGCATTTAGATGTTTGTCATTTGACAAAGATGCTAGACCTTCTATGATAGAAGTTGCAGAGGAACTTCTACTAATCAACAAAGATTGCATGCATGTGAGGACCCCCTCACCACAGGAGATCTTCAAATCAAGCTTTGAAAGTAAATTTCTGCAGAAGGTTAGCATGTCCCCCAGCTCTATTCAACCACCTTGGACAAGCGATGGTAGCTCATTGTCGGAGACTCTTCCAAATACAATCAAACATTGATATATTTAACTGATTTCTTGGACTTTAGGCATATCATGTGTAATTTTGAGGTGTTTATAAGCATAAGAAGAAGCCATTGTGTTGGTTTCCTTCTGTACTTTTCTTGATATACTGTTTATTGGAACATATTCTTTCTGGTTGGTTGTTGGGGGTTTGGTGGGGGGTGCATTATGTCTGAATCCTGGTGTTGATGTTGTATGCCTTTACCACCCTTAATTGCAAATGGATTAAGGTGATTTTCCAAAGGATTCTATTATCCGGTTCA

Fln Alignment:

Contig1307___SSVAHHKNKCNERCGSIAIPYPFYLDPE-CGFPGFNLECLNSTPVVNLDDNKYNVLSFLSDSFLIDPLNSSCELNVNSFSFRGNKHYGISLENFLQLSDCRNSSACLVDCNIPIQQNNTECKYNATCCYPLSNTTLWQLGN-SISIFAKFHCSAFSSWVLSSPFAPTENAEYGLKMEWALPRNCSNIGCSPNAVCVKATTIKGGVRCQCNPGYGGDGFTDKGAGCFK
D5ACS3______________SNIAQSTRQCNERCGNISIPYPFYVNSRSCGVDGFILQCNNNTVRIEVNKLYYNVLSFSADGIIIDPLRSSCSKNLKGFNVKGMKNYAISISNFVQFSDCKNTTGCLLKCNIPMQSSNEQCLFDKTCCYPLLNGTIWHPGDYDFAHFARLQCQSFISWVL-TPTSIRLDAEYGLKLEWGIMGTCDDIRCDPNAVCANAVALK-GVRCTCKDGYQGDGF-HEGTGCVR

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1106	33		66		0.997452
1110			33	66	0.997452
1111		66	33		0.997452
1291	80		20		0.995493
1293	80		20		0.995493
1391	25			75	0.996473
1392		25		75	0.996473
1393	25		75		0.996473
2169		78	7	14	0.999974
2213	10			90	0.90298
2290	20		80		0.995493
2348		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain