SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1292

Length: 3810 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene1292
TCAGCACTCTCAGATCCTCATTTAAATCAAAATAGTTCTGCATCCGAATCCGCCGGGAAGCAAAGCCAACCCCAACCACAATCCCAACCCAAATCCATGGAGTCTGAGGCCCAAAATAATGGGAAGAACACAGGTAAAGTCAGAGTAGCTGGAAGACGAAGACTGTGTAAAGCTTCTAATGATGATATTACTTTGAGTTCTCATTGTTTGGTGTCTAATGAATCGGCAACTAGTGAAAAAGATGATGGTGGTTATTCTGAAGGAAGCAATGCAGGATGCCAAGGGTTTAGTATTAAACAGAGACAGGATAAGATATCTTCGAAAAATGATTTGGATGAAATAAATTCAAGGCTTGGTTGTCTAAGCATCAAAAGTTCCAAACGTGTAGAACACTCCATAACTACAGAGTTAGATAATGCAGAGCCGCGGAAAACTCTCAAAAACAAGATTTTTAGATGCTTCGAATTATTTCAAGGATGGTTCAGACAGTGAATGTGATGAGGAGTCTGGAGCTGAGGTTGAGGACAGAAGGGACAAGGTGAACAGTATATGCGATGAAGAATCAGCAGGTGATGAGGAATATACAGGGCATGTCGAGGATCGTGAGGATGGAGTTGATACCCTAGTCCACAGCTCGGATGCTCCAGAATTTGAGAGTGCTTTGTCTGCTCTGTCTTCAGCATCTGTTAAGGTTGGCGATGGTGAAGAGGATTCTGCTGAATCTTCAAGGTGCACTGAATTGCATACTGGAAATGATAACAGGGATCACAATCAAGCGATTACTTTTGTGAGTTTTAATGCAAAACATGTACATGGCATAAGTAGTGAAACTGATGCAAAATTAAGACCTTCTAGGGGCATTAAACAAATGACAAAACCCTCTAAATTTTTTTCTGCGGTAGCAATTTCTTCTTCTGTGGATGAAGATAATTCCGGGTTTTCTGAAGATGAGAACAGTTCATTAGATTCTGCAGAATCAGTAAAAGTGCAATTGAAAAAACATGCTCTTACTACTAAGGAAAATCATGCACAAAATGTGTATGAATATGAAGATGTGAGTAGCAGCTCAGTGGAAGAGGTCGCTTTAGAAGAATCAAAAGCAATTACATTCACACAAGGCAAACAAACGTATAGACTTCCTGGCAAAATAGCAACCACTTTGTACCCACATCAACGTGAAGGTATCAAATGGCTCTGGGATCTTCACTGTAAATCCAGAGGAGGCATTTTAGGTGATGACATGGGGCTGGGCAAAACAATGCAGTTATCTTCTTTCTTGGCAGGACTTTTTACCTCATGCCTTATCAAGCGTGCATTGATTGTAGCACCAAAAACTGTCCTTCCTAATTGGATGAAAGAGTTATCTATTGTTGGCCTCTCAAGAAAAGTTAGGGATTTTTCTGGGAGTCCAGGAAGCACACGTGAGTATGCTCTTCAACATGTTCTTCAGACTGGAGGTATACTTCTAACAACATATGATGTTGTTCGAAATAATTGGAAAGCAATTAGAGGGGATTATCATGGAAGAGATGGATATGGAGATACAAGTGAAGATATTGTTACATGGGATTATGTGATCTTGGATGAGGGACACATCATCAAAAATCCCAATACTCAACGTGCCACAAGCCTTCGAGAGATTCCTAGTGCACATCGTATTATTGTCAGTGGCACACCTATTCAAAACAACCTAAAGGAAATGTGGGCTTTATTTGACTTTTGTTGTCCAGAACTTCTTGGAGATAAAAAGGATTTTAAGGCAAGGTATGAGGATCTCATTTTGCATGCTAATGACAAGAGAGCAACTCAAAGACAAAAATGGATTGGTTCCAAAGCTGCACAGGAATTGAGAGAACGAATTCAGCCGTACTTTTTGCGTCGTCTCAAGAGTGAAGTCTTCCCACAATCTGGGGATTCTTCTCTTCGAAAACTAGCAAAAAAGGATGATATAATTGTGTGGCTGAAATTGACAGCATGCCAGCGGCAATTGTACACAGCATTTCTTAATAGTGAAACGGCTCATTCGTCAGTTGAAGGTTCAGCTCTGGCTGCTTTAACGGTATTGAAAAAGATATGTGACCATCCTGGACTATTGACAAAGAGAGCAGCTGATGACATAGCAGAAGGAATGGAATCTATGATCAAGGGAGTAGGTGTTACCGAGGAAGAAGAGATACACGCGGAAGTCGCCGCTGCAGAAGAGATGGCTGCATCATTAGCAAGCATGTCTGAACTGGAAAATGGAGAGAAGAAACATGGAAATGCATCCTGCAAAATTGTTTTCTTGATGGCACTGCTGGATAATCTCCTCGCGGAGGACCATCGAGTGCTAGTCTTTTCTCAGACTCGAAAAATGCTTAATATTATTCAGGAGGAAGTAAGAAGCAAAGGGTATGATTTTCTGCGGATTGATGGCACAACAAAGGCATCTGACAGAGAAAAATTTGTAAATGAATTTCAAGCATACAACAAAATTCCTATATTTTTATTGACATCACAAGTAGGTGGTCTAGGGATCACACTTACTGGAGCTGATCGAGTCGTCATTGTGGATCCTGCTTGGAACCCAAGCACCGACAATCAAAGTGTTGATCGTGCATATCGGATTGGGCAGTTAAGAAATGTGCTGGTCTATCGTTTAATTACCTGTGGCACCATTGAAGAGAAGATTTATCGAAAACAGGTATTCAAGGGAGGCCTATTCAAAACTGCAACAGAACACAAACAACAAACTCGGTATTTTAGTCACCAGGAGCTTCATGAACTTTTTAGCATACCAGAAAGTGGTTTTGATGTTTCTCTGACTCAGCAACAACTTCATGAGGAGCATGACAGTCAACATGAAATTGATGCTTTGTTGAAGCAACATATTGAGTTCCTAGAAGGCCAAGGGATTGCTGGGGTTAGTCATCATAGTTTGCTATATTCTAAGACAGAATCAGTGCAATCTCCGCCACCTGAAGATAATGACATGTCGAAGTGGGACCCAAGGAGAAAACAATATATAGAGCCTATCTCAAGATATCCTACAGCAAAATCATCACAGGATGATATTGTAACCGGAAGTGAGTATGCCTTCAGGCCAAAAGACCTTAAACCTGTTATGTGTGAAACTCCTCCGGCAGCTGATGATGGTAAGGAAAATGCCATCAAGGAGAATATCCGACGTCTCTCACGAATTCTTGCAGATGAGGCTGTGGTTTCTAAGCTACCAGACAAAGGGGAGAATCTCAAGAGGAAGATGAAAGATTTAACAAATCAACTGAAGAACATGGAAAACATTTCTTCTAGGAGTCGTGTAATTGTTGTCCCTGAGAGTTCACCTGTTTCAGTCATTTCTGATGATAAGGTTTGTGTTATAAGCCCTGAATCAGAAGGTAAGAAAATGGGGAATGTAGCCTCTTCTATAGAGAATTCAGAAAAAGAAAGGAAGGAGAGTTGTTCCAAAAGTTGCAATGTCATTAACATCGATGACATGTCTAAGAAGCTTGGTAGATTATCTGTTCAGGGTACCCACGAATAGAAAATGGGATGCTGATAACTTTTCAGCTTTAAGGAACTCATAGATACTATTTATGCGAGTCAACTGTTTAGCAAAGTCGCCAAGGAGGTTACTTCTAAGGTAATCAGTTATTGTTTGTGTTGAGTTGACGCTGGAATGACATTTACACATTCCATACAACAATTCTTTGTAATGGAAGTTTCCTATATATTGCAATTTGGAGACGATGTTGAAAATAATTTCTTGAATTCTGCTTCCCTTTATATTGACTCTTTGAAATTTATATTGAAGCCAGGCATAAAATCCTG

Ace file of the UniGene sp_v3.0_unigene1292 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein chromatin remodeling 24 [Arabidopsis thaliana] gb\|AAL58917.1\|AF462829_1 AT5g63950/MBM17_5 [Arabidopsis thaliana] gb\|AAM98274.1\| At5g63950/MBM17_5 [Arabidopsis thaliana] gb\|AED97819.1\| protein chromatin remodeling 24 [Arabidopsis thaliana]	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Sma3	SNF2 family DNA-dependent ATPase	-	-	9.271e-07	-

Source	Gene names
Sma3	At5g63950; CHR1537; CHR1541; CHR927; CHR932; GSVIVT00006008001; MICPUCDRAFT_15861; OSJNBb0020J19.17; Os01g0636700; Os04g0692700; OsI_02992; OsI_18057; OsJ_16754; P0696E01.11; PHYPADRAFT_71851; PHYPADRAFT_80235; POPTRDRAFT_562497; POPTRDRAFT_800935; RCOM_1

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Formylmethionine deformylase	IPR000181	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	SNF2-related	IPR000330	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G63950.1	CHR24 chromatin remodeling 24 chr5:25592160-25598405 REVERSE LENGTH=1090	58%
RefSeq	Arabidopsis thaliana	NP_201200.2	protein chromatin remodeling 24 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002306264.1	chromatin remodeling complex subunit [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAS5

Fln msg: your sequence is longer than subject: 1036 - 407

Fln protein: MQSRGKLSKTRFLDASNYFKDGSDSECDEESGAEVEDRRDKVNSICDEESAGDEEYTGHVEDREDGVDTLVHSSDAPEFESALSALSSASVKVGDGEEDSAESSRCTELHTGNDNRDHNQAITFVSFNAKHVHGISSETDAKLRPSRGIKQMTKPSKFFSAVAISSSVDEDNSGFSEDENSSLDSAESVKVQLKKHALTTKENHAQNVYEYEDVSSSSVEEVALEESKAITFTQGKQTYRLPGKIATTLYPHQREGIKWLWDLHCKSRGGILGDDMGLGKTMQLSSFLAGLFTSCLIKRALIVAPKTVLPNWMKELSIVGLSRKVRDFSGSPGSTREYALQHVLQTGGILLTTYDVVRNNWKAIRGDYHGRDGYGDTSEDIVTWDYVILDEGHIIKNPNTQRATSLREIPSAHRIIVSGTPIQNNLKEMWALFDFCCPELLGDKKDFKARYEDLILHANDKRATQRQKWIGSKAAQELRERIQPYFLRRLKSEVFPQSGDSSLRKLAKKDDIIVWLKLTACQRQLYTAFLNSETAHSSVEGSALAALTVLKKICDHPGLLTKRAADDIAEGMESMIKGVGVTEEEEIHAEVAAAEEMAASLASMSELENGEKKHGNASCKIVFLMALLDNLLAEDHRVLVFSQTRKMLNIIQEEVRSKGYDFLRIDGTTKASDREKFVNEFQAYNKIPIFLLTSQVGGLGITLTGADRVVIVDPAWNPSTDNQSVDRAYRIGQLRNVLVYRLITCGTIEEKIYRKQVFKGGLFKTATEHKQQTRYFSHQELHELFSIPESGFDVSLTQQQLHEEHDSQHEIDALLKQHIEFLEGQGIAGVSHHSLLYSKTESVQSPPPEDNDMSKWDPRRKQYIEPISRYPTAKSSQDDIVTGSEYAFRPKDLKPVMCETPPAADDGKENAIKENIRRLSRILADEAVVSKLPDKGENLKRKMKDLTNQLKNMENISSRSRVIVVPESSPVSVISDDKVCVISPESEGKKMGNVASSIENSEKERKESCSKSCNVINIDDMSKKLGRLSVQGTHE*

Protein Length: 1037

Fln nts: TCAGCACTCTCAGATCCTCATTTAAATCAAAATAGTTCTGCATCCGAATCCGCCGGGAAGCAAAGCCAACCCCAACCACAATCCCAACCCAAATCCATGGAGTCTGAGGCCCAAAATAATGGGAAGAACACAGGTAAAGTCAGAGTAGCTGGAAGACGAAGACTGTGTAAAGCTTCTAATGATGATATTACTTTGAGTTCTCATTGTTTGGTGTCTAATGAATCGGCAACTAGTGAAAAAGATGATGGTGGTTATTCTGAAGGAAGCAATGCAGGATGCCAAGGGTTTAGTATTAAACAGAGACAGGATAAGATATCTTCGAAAAATGATTTGGATGAAATAAATTCAAGGCTTGGTTGTCTAAGCATCAAAAGTTCCAAACGTGTAGAACACTCCATAACTACAGAGTTAGATA_-_ATGCAGAGCCGCGGAAAACTCTCAAAAACAAGATTTTTAGATGCTTCGAATTATTTCAAGGATGGTTCAGACAGTGAATGTGATGAGGAGTCTGGAGCTGAGGTTGAGGACAGAAGGGACAAGGTGAACAGTATATGCGATGAAGAATCAGCAGGTGATGAGGAATATACAGGGCATGTCGAGGATCGTGAGGATGGAGTTGATACCCTAGTCCACAGCTCGGATGCTCCAGAATTTGAGAGTGCTTTGTCTGCTCTGTCTTCAGCATCTGTTAAGGTTGGCGATGGTGAAGAGGATTCTGCTGAATCTTCAAGGTGCACTGAATTGCATACTGGAAATGATAACAGGGATCACAATCAAGCGATTACTTTTGTGAGTTTTAATGCAAAACATGTACATGGCATAAGTAGTGAAACTGATGCAAAATTAAGACCTTCTAGGGGCATTAAACAAATGACAAAACCCTCTAAATTTTTTTCTGCGGTAGCAATTTCTTCTTCTGTGGATGAAGATAATTCCGGGTTTTCTGAAGATGAGAACAGTTCATTAGATTCTGCAGAATCAGTAAAAGTGCAATTGAAAAAACATGCTCTTACTACTAAGGAAAATCATGCACAAAATGTGTATGAATATGAAGATGTGAGTAGCAGCTCAGTGGAAGAGGTCGCTTTAGAAGAATCAAAAGCAATTACATTCACACAAGGCAAACAAACGTATAGACTTCCTGGCAAAATAGCAACCACTTTGTACCCACATCAACGTGAAGGTATCAAATGGCTCTGGGATCTTCACTGTAAATCCAGAGGAGGCATTTTAGGTGATGACATGGGGCTGGGCAAAACAATGCAGTTATCTTCTTTCTTGGCAGGACTTTTTACCTCATGCCTTATCAAGCGTGCATTGATTGTAGCACCAAAAACTGTCCTTCCTAATTGGATGAAAGAGTTATCTATTGTTGGCCTCTCAAGAAAAGTTAGGGATTTTTCTGGGAGTCCAGGAAGCACACGTGAGTATGCTCTTCAACATGTTCTTCAGACTGGAGGTATACTTCTAACAACATATGATGTTGTTCGAAATAATTGGAAAGCAATTAGAGGGGATTATCATGGAAGAGATGGATATGGAGATACAAGTGAAGATATTGTTACATGGGATTATGTGATCTTGGATGAGGGACACATCATCAAAAATCCCAATACTCAACGTGCCACAAGCCTTCGAGAGATTCCTAGTGCACATCGTATTATTGTCAGTGGCACACCTATTCAAAACAACCTAAAGGAAATGTGGGCTTTATTTGACTTTTGTTGTCCAGAACTTCTTGGAGATAAAAAGGATTTTAAGGCAAGGTATGAGGATCTCATTTTGCATGCTAATGACAAGAGAGCAACTCAAAGACAAAAATGGATTGGTTCCAAAGCTGCACAGGAATTGAGAGAACGAATTCAGCCGTACTTTTTGCGTCGTCTCAAGAGTGAAGTCTTCCCACAATCTGGGGATTCTTCTCTTCGAAAACTAGCAAAAAAGGATGATATAATTGTGTGGCTGAAATTGACAGCATGCCAGCGGCAATTGTACACAGCATTTCTTAATAGTGAAACGGCTCATTCGTCAGTTGAAGGTTCAGCTCTGGCTGCTTTAACGGTATTGAAAAAGATATGTGACCATCCTGGACTATTGACAAAGAGAGCAGCTGATGACATAGCAGAAGGAATGGAATCTATGATCAAGGGAGTAGGTGTTACCGAGGAAGAAGAGATACACGCGGAAGTCGCCGCTGCAGAAGAGATGGCTGCATCATTAGCAAGCATGTCTGAACTGGAAAATGGAGAGAAGAAACATGGAAATGCATCCTGCAAAATTGTTTTCTTGATGGCACTGCTGGATAATCTCCTCGCGGAGGACCATCGAGTGCTAGTCTTTTCTCAGACTCGAAAAATGCTTAATATTATTCAGGAGGAAGTAAGAAGCAAAGGGTATGATTTTCTGCGGATTGATGGCACAACAAAGGCATCTGACAGAGAAAAATTTGTAAATGAATTTCAAGCATACAACAAAATTCCTATATTTTTATTGACATCACAAGTAGGTGGTCTAGGGATCACACTTACTGGAGCTGATCGAGTCGTCATTGTGGATCCTGCTTGGAACCCAAGCACCGACAATCAAAGTGTTGATCGTGCATATCGGATTGGGCAGTTAAGAAATGTGCTGGTCTATCGTTTAATTACCTGTGGCACCATTGAAGAGAAGATTTATCGAAAACAGGTATTCAAGGGAGGCCTATTCAAAACTGCAACAGAACACAAACAACAAACTCGGTATTTTAGTCACCAGGAGCTTCATGAACTTTTTAGCATACCAGAAAGTGGTTTTGATGTTTCTCTGACTCAGCAACAACTTCATGAGGAGCATGACAGTCAACATGAAATTGATGCTTTGTTGAAGCAACATATTGAGTTCCTAGAAGGCCAAGGGATTGCTGGGGTTAGTCATCATAGTTTGCTATATTCTAAGACAGAATCAGTGCAATCTCCGCCACCTGAAGATAATGACATGTCGAAGTGGGACCCAAGGAGAAAACAATATATAGAGCCTATCTCAAGATATCCTACAGCAAAATCATCACAGGATGATATTGTAACCGGAAGTGAGTATGCCTTCAGGCCAAAAGACCTTAAACCTGTTATGTGTGAAACTCCTCCGGCAGCTGATGATGGTAAGGAAAATGCCATCAAGGAGAATATCCGACGTCTCTCACGAATTCTTGCAGATGAGGCTGTGGTTTCTAAGCTACCAGACAAAGGGGAGAATCTCAAGAGGAAGATGAAAGATTTAACAAATCAACTGAAGAACATGGAAAACATTTCTTCTAGGAGTCGTGTAATTGTTGTCCCTGAGAGTTCACCTGTTTCAGTCATTTCTGATGATAAGGTTTGTGTTATAAGCCCTGAATCAGAAGGTAAGAAAATGGGGAATGTAGCCTCTTCTATAGAGAATTCAGAAAAAGAAAGGAAGGAGAGTTGTTCCAAAAGTTGCAATGTCATTAACATCGATGACATGTCTAAGAAGCTTGGTAGATTATCTGTTCAGGGTACCCACGAATAG___AAAATGGGATGCTGATAACTTTTCAGCTTTAAGGAACTCATAGATACTATTTATGCGAGTCAACTGTTTAGCAAAGTCGCCAAGGAGGTTACTTCTAAGGTAATCAGTTATTGTTTGTGTTGAGTTGACGCTGGAATGACATTTACACATTCCATACAACAATTCTTTGTAATGGAAGTTTCCTATATATTGCAATTTGGAGACGATGTTGAAAATAATTTCTTGAATTCTGCTTCCCTTTATATTGACTCTTTGAAATTTATATTGAAGCCAGGCATAAAATCCTG

Fln Alignment:

Contig1292___MALLDNLLAE-----DHRVLVFSQTRKMLNIIQEEVRSKGYDFLRIDGTTKASDREKFVNEFQAYNKIPI-FLLTSQVGGLGITLTGADRVVIVDPAWNPSTDNQSVDRAYRIGQLRNVLVYRLITCGTIEEKIYRKQVFKGGLFKT-----ATEHKQQTRYFSHQELHELFSIPESGFDVSLTQQQLHEEHDSQ
D5AAS5______________MHVLARLLAHLFTKTDDRIVLVSNYTQTLDLFAQICRERNYPFLRLDGTTSIGKRRKLVQRFNDPSQNEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLTTGTIEEKVYQRQMSKEGLQKVVQQGQTDDPKSQVNSFSIEDLRDLFTLQDS------IRSEIHENMDCQ

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1223	10	90			0.90298
1304	11	88			0.923564
1308		88		11	0.923564
1343	12			87	0.992554
1506	33		66		1.0
3210	25		75		0.996473
3213		75	25		0.996473
3232	50			50	1.0
3453	66	33			0.997452
3454		33	66		0.997452
3455	66	33			0.997452
3457		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain