SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1291

Length: 2064 nt

UniGene Fasta

>sp_v3.0_unigene1291
GAAAAACCCTAAACCTTTCAGGCACAGGCATTTGGAGCATCCGCCTTCACACCCGTCCATAAGCTGCGGATCTCACGCCCTCTCATAAGCTTCCAATTTTCGGAATCGCAGGTTGGAAGCGGTTATCTTTTCAAGCAGGATTGGGGACCATATCTCCGTCCAGAGGAAAATAGCGAGTCTGTGGCTCAGCTGGTCAGTTGAGGAGATTGATTCATAGCTGAGGAGAATCGCACAGAACACATTGTCCATAGTTGAACCCATCTTTTGGCTGAAAGCTCCTGGTGTTGAAGAGCACAATGGCATCTGCAACATTGTCCATGAGTTCAGTTTCTGTCTCTGGGTTTCTAGCACCCATTAGTGAAACTCGGCGATGTGGGGCTGGACTCCAGGCTTCCGCAGTTAGCTTTCCTACGAAGAAGGTTTTCCAGACTTTCAGTGGCCTGAAAGCTGGTGTAGCTTGCGAATCTGAAGCATCCTTCTTTAGTCACGAGACAAATGCAGTTCTTTGGTCTTCAGTTAGAAGGTCAAAGTCAACAGAAAATCAACAGATTGTTCAGAAAGCTGGTCAGATTCGGGCATCAACATTTAAGGTTGCTATTCTTGGAGCTGCAGGAGGGATTGGACAACCTCTTTCACTGTTGATTAAAATGTCTCCTTTGATTTCTGGTTTGCATCTTTATGATATTGCAAATGTGAAAGGAGTTGCTGCAGATCTCAGCCACTGTAACACTCCAGCACAGGTTCTAGATTTTACCGGGCCAGCTGAATTGGCAAATTCTTTGAAGGGTGTGGATGTCGTGGTCATCCCGGCAGGAGTTCCAAGAAAGCCAGGCATGACTCGAGATGACCTTTTCAACATCAATGCTGGTATAGTGAGGACCTTGGTAGAAGCTGTTGCAGATAACTGTCCCAATGCCTTCATTCAAATCATCAGTAACCCTGTAAATTCAACTGTACCCATTGCCGCTGAGGTGCTCAAGCAGAAAGGCGTATATGATCCTAAAAAGCTGTTTGGTGTAACCACCCTGGACGTTGTTAGAGCAAACACTTTTGTTGCTCAGAAAAAGAATCTAAGACTTATTGATGTTGACGTGCCAGTTGTTGGAGGTCATGCTGGGATCACCATTCTTCCATTACTGTCCAAAACCAAGCCTTCTGTAACATTCACGCAGGAGGAGATTGAACAGCTTACAGTCAGAATTCAGAATGCTGGAACTGAAGTTGTGGAAGCAAAAGCGGGCGCTGGATCTGCAACTCTCTCCATGGCTTATGCTGCTGCTAGATTTGTTGAATCTTCTCTCCGTGCACTTGATGGTGATCCTGATGTGTATGAGTGTTCTTATATTCAATCTGAACTGACAGAATTACCTTTCTTTGCTTCTAGGATTAAACTTGGGAAGCAAGGTGTTGAAGCGGTGATTGCCTCAGACCTTGAGGGGCTGACTGAGTATGAACAGAAATCTCTAGAAGCTCTTAAGCCAGAGTTGAAGGCAAGCATTGAAAAGGGCATTGCTTTTGCAAACAAGTAAGCACCAGTTGGTAGTGCCGTTTGAAGGCATTCCAGTTAACTTGAATTGTAGGACAAATAAGATGAGCAACATGCACTACGGCTTTAGGGTGCTGTCGTTTTTGCAGTTTAGGCATATATTTTTGCATTTTGGTACTAAAGACAATTCCAAGCTCTTTTGAGGAAAGACGGAGTACTGACGGTTATCTACTTTTCCATGCCCTTAGCTTTTCCAGAGGAATTCTCAATAAGGTCTTTATTGATCTAATGTTTATTTCACCAGAAACTGCTAATACAAGTTCCCAATACCACATGTTTTTAGGTTGTTGCAAATAGGCATAGATTTTGCATATTGATACAAAGACAATTTCCAGTCCTTTTGAGGAAAGACAGAAGGTTGACTTTCTTATGCGGGCTTGGTGATTCACTATTATTTACTTTCTCATGTCCTGAGCTTTTACGGAGAAATTCTCAGTAAGGTCTTTATTGATTTAATGTTTATTTTGCTAGAAACTGCGAATACAAGTCCCCCGTACCACATGTTTTTTGGTTGTTGC

Ace file of the UniGene sp_v3.0_unigene1291

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Malate dehydrogenase n=2 Tax=Pinaceae RepID=C9EIK5_9CONI	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	L-malate dehydrogenase activity	GO:0030060	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	malate metabolic process	GO:0006108	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lactate/malate dehydrogenase, N-terminal	IPR001236	-	-
Sma3	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	IPR015955	-	-
Sma3	Malate dehydrogenase, active site	IPR001252	-	-
Sma3	Malate dehydrogenase, type 1	IPR010097	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G47520.1	MDH malate dehydrogenase chr3:17513657-17514868 FORWARD LENGTH=403	77%
RefSeq	Arabidopsis thaliana	NP_190336.1	malate dehydrogenase [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002330960.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUM0

Fln msg:

Fln protein: MASATLSMSSVSVSGFLAPISETRRCGAGLQASAVSFPTKKVFQTFSGLKAGVACESEASFFSHETNAVLWSSVRRSKSTENQQIVQKAGQIRASTFKVAILGAAGGIGQPLSLLIKMSPLISGLHLYDIANVKGVAADLSHCNTPAQVLDFTGPAELANSLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRTLVEAVADNCPNAFIQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTKPSVTFTQEEIEQLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDPDVYECSYIQSELTELPFFASRIKLGKQGVEAVIASDLEGLTEYEQKSLEALKPELKASIEKGIAFANK*

Protein Length: 412

Fln nts: GAAAAACCCTAAACCTTTCAGGCACAGGCATTTGGAGCATCCGCCTTCACACCCGTCCATAAGCTGCGGATCTCACGCCCTCTCATAAGCTTCCAATTTTCGGAATCGCAGGTTGGAAGCGGTTATCTTTTCAAGCAGGATTGGGGACCATATCTCCGTCCAGAGGAAAATAGCGAGTCTGTGGCTCAGCTGGTCAGTTGAGGAGATTGATTCATAGCTGAGGAGAATCGCACAGAACACATTGTCCATAGTTGAACCCATCTTTTGGCTGAAAGCTCCTGGTGTTGAAGAGCACA_-_ATGGCATCTGCAACATTGTCCATGAGTTCAGTTTCTGTCTCTGGGTTTCTAGCACCCATTAGTGAAACTCGGCGATGTGGGGCTGGACTCCAGGCTTCCGCAGTTAGCTTTCCTACGAAGAAGGTTTTCCAGACTTTCAGTGGCCTGAAAGCTGGTGTAGCTTGCGAATCTGAAGCATCCTTCTTTAGTCACGAGACAAATGCAGTTCTTTGGTCTTCAGTTAGAAGGTCAAAGTCAACAGAAAATCAACAGATTGTTCAGAAAGCTGGTCAGATTCGGGCATCAACATTTAAGGTTGCTATTCTTGGAGCTGCAGGAGGGATTGGACAACCTCTTTCACTGTTGATTAAAATGTCTCCTTTGATTTCTGGTTTGCATCTTTATGATATTGCAAATGTGAAAGGAGTTGCTGCAGATCTCAGCCACTGTAACACTCCAGCACAGGTTCTAGATTTTACCGGGCCAGCTGAATTGGCAAATTCTTTGAAGGGTGTGGATGTCGTGGTCATCCCGGCAGGAGTTCCAAGAAAGCCAGGCATGACTCGAGATGACCTTTTCAACATCAATGCTGGTATAGTGAGGACCTTGGTAGAAGCTGTTGCAGATAACTGTCCCAATGCCTTCATTCAAATCATCAGTAACCCTGTAAATTCAACTGTACCCATTGCCGCTGAGGTGCTCAAGCAGAAAGGCGTATATGATCCTAAAAAGCTGTTTGGTGTAACCACCCTGGACGTTGTTAGAGCAAACACTTTTGTTGCTCAGAAAAAGAATCTAAGACTTATTGATGTTGACGTGCCAGTTGTTGGAGGTCATGCTGGGATCACCATTCTTCCATTACTGTCCAAAACCAAGCCTTCTGTAACATTCACGCAGGAGGAGATTGAACAGCTTACAGTCAGAATTCAGAATGCTGGAACTGAAGTTGTGGAAGCAAAAGCGGGCGCTGGATCTGCAACTCTCTCCATGGCTTATGCTGCTGCTAGATTTGTTGAATCTTCTCTCCGTGCACTTGATGGTGATCCTGATGTGTATGAGTGTTCTTATATTCAATCTGAACTGACAGAATTACCTTTCTTTGCTTCTAGGATTAAACTTGGGAAGCAAGGTGTTGAAGCGGTGATTGCCTCAGACCTTGAGGGGCTGACTGAGTATGAACAGAAATCTCTAGAAGCTCTTAAGCCAGAGTTGAAGGCAAGCATTGAAAAGGGCATTGCTTTTGCAAACAAGTAA___GCACCAGTTGGTAGTGCCGTTTGAAGGCATTCCAGTTAACTTGAATTGTAGGACAAATAAGATGAGCAACATGCACTACGGCTTTAGGGTGCTGTCGTTTTTGCAGTTTAGGCATATATTTTTGCATTTTGGTACTAAAGACAATTCCAAGCTCTTTTGAGGAAAGACGGAGTACTGACGGTTATCTACTTTTCCATGCCCTTAGCTTTTCCAGAGGAATTCTCAATAAGGTCTTTATTGATCTAATGTTTATTTCACCAGAAACTGCTAATACAAGTTCCCAATACCACATGTTTTTAGGTTGTTGCAAATAGGCATAGATTTTGCATATTGATACAAAGACAATTTCCAGTCCTTTTGAGGAAAGACAGAAGGTTGACTTTCTTATGCGGGCTTGGTGATTCACTATTATTTACTTTCTCATGTCCTGAGCTTTTACGGAGAAATTCTCAGTAAGGTCTTTATTGATTTAATGTTTATTTTGCTAGAAACTGCGAATACAAGTCCCCCGTACCACATGTTTTTTGGTTGTTGC

Fln Alignment:

Contig1291___GFLAPISETRRCGAGLQASAVSFPTKKVFQTFSGLKAGVACESEASFFSHETNAVLWSSVRRSKSTENQQIVQKAGQIRASTFKVAILGAAGGIGQPLSLLIKMSPLISGLHLYDIANVKGVAADLSHCNTPAQVLDFTGPAELANSLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRTLVEAVADNCPNAFIQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTKPSVTFTQEEIEQLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDPDVYECSYIQSELTELPFFASRIKLGKQGVEAVIASDLEGLTEYEQKSLEALKPELKASIEKGIAFANK
A9NUM0______________GFLAPICETRPSGAGLQASAVSFPTKKVFNTFSGLKAGVACESEASFFSHETNAVLWSSVSRPRSAENRQIVPSAGQIRASTFKVAILGAAGGIGQPLSLLIKMSPLISGLHLYDIANVKGVAADLSHCNTPAQILDFTGPAELANSLKDVDVVVIPAGVPRKPGMTRDDLFNINAGIVRTLVEAVADNSPNAFIQIISNPVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTKPSVTFTQDEIEQLTIRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDPDVYECSYIQSELTELPFFASRIKLGKKGVEAVIASDLEGLTEYEQKSLEALKPELKASIEKGIAFANK

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
576	33		66		0.997452
625	66		33		0.997452
709	33			66	0.997452
718		85		14	0.993533
727		28		71	1.0
955			33	66	0.997452
961		66		33	0.997452
967		66		33	0.997452
979		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain