SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1286

Length: 1280 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1286

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chloroplast nucleoid DNA binding protein, putative n=3 Tax=Arabidopsis RepID=Q8L9B9_ARATH	-	-	2.0e-20	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%

Source	GOs	Term	Type	e value	Identity
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	0.0	-
Sma3	proteolysis	GO:0006508	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase A1	IPR001461	-	0.0	-
Sma3	Peptidase aspartic, active site	IPR001969	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKD5

Fln msg: your sequence is shorter than subject: 175 - 482

Fln protein: TSKFTSLLSNPLAPSWYFVGIRSIRVGGKRLNVSSEVFQFNSRGGGTIIDSGVLISRLVKPAYDALRDEFVKRMPLVTVEPDLQNPLDTCFAQPSDFRRLKIPGISFHFLDGAHIHIHKKGILVPVQNNQICLAFQPAGMNDLNIIGSLQQQRYIVSFDEHHERIGFASVRSCF*

Protein Length: 176

Fln nts: CACCTCCAAATTCACCAGTTTGCTGTCGAATCCCCTGGCTCCTTCATGGTATTTTGTGGGAATTCGCAGCATCAGGGTGGGGGGCAAGCGCCTGAACGTCTCGTCAGAGGTGTTCCAGTTCAATTCTCGTGGAGGAGGGACGATCATCGACAGTGGAGTCTTGATCAGCCGCCTGGTGAAGCCGGCCTATGATGCTTTAAGAGATGAATTTGTGAAGAGAATGCCGCTTGTTACAGTGGAACCAGATCTGCAGAACCCTTTAGACACCTGTTTCGCCCAGCCTAGCGACTTCAGACGCCTGAAAATTCCTGGAATCAGTTTCCATTTTCTGGATGGCGCGCATATTCATATCCACAAAAAAGGAATTTTGGTACCAGTCCAAAACAACCAGATCTGTTTGGCATTCCAACCTGCAGGTATGAATGATTTGAACATTATAGGAAGTCTGCAACAACAGCGTTACATTGTTTCTTTCGATGAGCACCACGAGAGAATAGGGTTTGCTTCTGTTCGTTCCTGCTTTTGA___TTCTCAGTAACTAACCTCTATGGATTGTGGTGATGGTATTTATTTCATTCTCCATATCCACCCACCTGTAGGTTTCTGTTGGGAACAATAACTTGCTTTTCCAGCCTCTGGTTAGGGTTGGGAACAACACAGGGCTATGAATAAAAGTACCAAAGGAGGGATTGGTCAGGTCAGACTTGCTATCATAAATGTGCAAAAGAAGGGATTGATCAGGTCAGGCTTGCTACCATTTCACTTTCAGGCTTGCTACCATTTCACTTTCTTTGAAATTTAACTCTTTTTGGGTCAACAAAGGGCTGATAAGGTCCTTGGACACCTATATTTATATAAATCCAAGAAGGATTTTTTCCACCTCAACATATTTTCCATCTGTCCAGGCTGACTAATGCATTGCATAAATGATAATTATTTGTTGTTCCATGAACCCTTCTTAGTTCACTGGTTCATCAGTCATTTTGATTGACTAAGTTTCATGATTAACAACCATTAGCTGCAGAGCAGCAAGTCCCTGCCTTTGGGTACTGCAGCATTGTTTCACCTCAGGGCAATTCATGCCTCATGATTACTGTGCCACCATTACTGTGTCACCTGTGTATGAAGTGTCTAAGGCACTGCAGCATTGGTTCACCTCAGGGCAATTCATGCCTCGTGATTACTGTGTGACCTGTGTATGAAGTGTCTAAGCGTGTTGTATATCTGTGTTCCTCATTTTTATGTCTCTGTTGTTCCCAGAAGCTATAATCCAAGCATTCCA

Fln Alignment:

Contig1286___FTSLLSNPLAPSWYFVGIRSIRVGGKRLNVSSEVFQFNSRGGGTIIDSGVLISRLVKPAYDALRDEF-VKRMPLVTVEPDLQNPLDTCFAQPSDFRRLKIPGISFHFLDGAHIHIHKKGILVPVQN--NQICLAFQPAG-MNDLNIIGSLQQQRYIVSFDEHHERIGFAS
B8LKD5______________FTPLVSNFMYPTFYFVGLNGISVGGDRLSIPPAVL----GRGSTIVDSGTVITRLLPQAYNALKTSFRSKTRDLPSAKP--FSILDTCY-DLSRHSQVRIPTITFHFQNNADVAVSDVGILVPVQNGGSQVCLAFASASQMDGFNIIGNFQQQRMRVAFDTGAGRIGFAS

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
129	33		66		0.997452
139	33		66		0.997452
231		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain