SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1283

Length: 3015 nt

UniGene Fasta

>sp_v3.0_unigene1283
GAACAAACTGTCACTAAGGAACAGCAATTTATTCACAAGCGTTTAAAAGATTTGATGAATAAACAGAAAGGAAGAATAGTGAGGACGATTGTTAAAAACAGAGATGATTCAAAACCTTGGGGTAATGCTCTGCAGGCCAAGGTGGGAAGTCGTTTGATAGAGCTCCTACTACAAGCAAGCTTCATACAACCTCCTGTTGATCAGTCTGCAGAAGGACCTCCAGAAATTAGACCTGCATTTAAACACACATTGAAGACAGTAATGATGGGACAAAAGATTGTGAAGAGATATGGTGTTATAGAATGTGATCCGCTGGTGAAGAGGGGACTTGAAAGAACGGCAAGGCACATGGTGATCCCTTACATGCCAATGTTGGTCAAACCTATTCCATGGACAGGGTATGATAAGGGAGGTTATTTAATCTTGCCTTCCCAAGTAATGCGCACACATGGGGCAAAGCAGCAACGAGAGGCAATGAAGAAAGTTCAAAAGTGCCAGGTAGAGAGAGTATATCAGGCATTGGATATACTTGGCTCAACAAAATGGAGAATCAATAAAAGAATTCTTGATGTGGTAGATAGGCTTTGGGCAGGAGGAGGTCGCCTTGCAGACTTGGTTGATCGAGAGGATGTGTCCATCCCTGAGAAACCAGATACAGAAGATGAAGCAGAAATTAAGCGTTGGAAATGGCGTTTAAAGAAGGCAAAGAAGACAAATAGTGAGATGCACGCTCAGCGTTGTGATGTAGAGTTAAAACTTGCTGTTGCAAGAAAAATGAAGGACGAAGAATTTTTTTACTATCCACATAACTTGGATTTTCGAGGGCGTGCTTACCCAATGCATCCGTATTTAAATCATCTAGGTTCAGACATATGTCGAGGAATTCTAGAATTTGCTGAGGGTCGACCGTTAGGAAAGACGGGGCTTTATTGGCTGAAGATACATTTGGCCAACTTATATGGTGGTGGTGTAGACAAATATTCTTTTGAGGGCCGACTAACATTTATTGAGGACAACATAAACAATATTATTGACTCAGCAGAGATGCCACTTGAAGGGGAACGATGGTGGTTAGAAGCTGAAGATCCGTTTCAGTGTTTGTCGGCTTGTATGGATCTCACAGATGCATTGAAGAGCTCTTCTCCAGAGACTTCCATCTCTCATATGCCTGTTCATCAGGATGGCTCATGCAATGGTTTGCAGCACTATGCAGCCTTGGGAAGAGATACGTTAGGAGCAGTAGCAGTTAACCTGATTGGTGGTGACAAGCCTGCTGATGTCTACTCGGGAATTGCTGCTAGGGTTGATGAAATCATGCAAAGAGATGCGCTGAAAGACCCCGCAACAGACAGGAGTGCAGAATGTGCGAGAGTGTTACTAGGGCAGGTGGACAGGAAATTAGTGAAGCAGACTGTGATGACTTCAGTCTATGGAGTGACCTATGTTGGTGCTCGTGATCAAATAAAGAAAAGGTTGAAAGAAAGGGGTTTTATTGCGGATGAAGTAGCCCTTTATAGTGCATCTTGCTATGCTGCTAAAACAACTCTTACTGCATTGGGTGAAATGTTTAATTCTGCAAGGAGTATCATGACATGGTTAGGCGATTGTGCCAAGATTATTGCATCTGAAAATCAACCAGTACGGTGGACTACACCACTTGGACTACCAGTTATACAGCCTTACAGAAAATTTGGAAGACAGTTGGTCAAGACATCTCTTCAGATTTTGGCCCTACGGCATGAAACTGATAAGGTTATGGTCAATCGACAAAAAAGTGCATTCCCTCCAAATTTTGTGCACTCACTCGATGGTTCTCATATGATGATGACTGCTCTTGCCTGCAAAGAAGCAGGCTTTAGTTTTGCAGGAGTACATGATTCATATTGGACTCACGCAGCTAATGTTGAGGAAATGAACCTTATACTTAGGGAGAAGTTCGTCGAATTGTACAGTGCACCAATATTGGAAAATTTGCTCAAAAGTTTTGAAACCTCCTTTCCTGAATTGGACTTCCCTCCTTTACCAGATCGAGGAGACTATGAATTGAATGAAGTCTTGAACTCGCCTTACTTCTTCAATTGATTTTCAACATGGCGGCATGACTTCTTTACTTCTTTACATTCACTCTTTTGTCGGCTGGAATGGAAGTTGGCAATGTAATATTGGTTTAGTTGGTCCTCATCTGTCATCACTTTTTCTCCTCTGGTGGCAGTCAATTGTATTCTTTTAGTTTGTTATTTTTGTGTGGACATTTTCCACTTGTAGAATTTCTGTTATTTTCTTAGTCCCATATCCTCGGAACGGGAAGTCATAGAAGAGTCGAAACAGATATCAAAAGATTCATCATTACGAGCAAAGATTCGAATGCTTGAACTTTTGTCTTGTATATAATTCTCTAGGATTAAGTTATTAATGCTGGTAAAATTAATGTTCTCCGGAGTGCCAATAATGTGATTTTTACATTTTCTTTTAGTTAAAGGCGCTTTCAATACCTTTTCCGGGACTATTTCTCACATATTGTACGTAACTTGGGTTTTTTAATTTTGAGTCATAAGAGTTCAAAATGAGTCCCACATAGCCACTGTTTCAGGTGACCTATATGGAATTTTCAGTTGAAGCAGATTTGAGAAAGCTGCTGTAAAAGTGAATTTCGAGCATTTATTACCATTTATTACCGCCACTAAAGGAAGGGAATTGCAAGTACGAAATAGCTCTGGCATATTTGATCATAATAATGTACACTACTGGTTCGATTTGAAGACTGGCACTTACATTGCTGGCTTTATACAGAAGTTTGAGCTGATTTTTATTGTTCTCTGCTCTATGAAATAGATTTCTCTCATTCCTACGTTTCTCTTCCTGTAAGAACTCTCGGTATTTTGTAATAACTTCGGACAGTTGTATGTGAAACTTCTTCCAGTACAACGTTCATTTTTGGCTTTGGAGCCCACAATGGTTATATGCTCTTCATAGGCAATCGATTTTAAAATATGCTATACCTTTGGCATATTTGAT

Ace file of the UniGene sp_v3.0_unigene1283

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-directed RNA polymerase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TA90_VITVI	-	-	0.0	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	DNA-directed RNA polymerase	-	-	2.436e-26	-

Source	ECs	Term	Type	e value	Identity
Sma3	DNA-directed RNA polymerase.	EC:2.7.7.6	-	9.477e-32	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	9.477e-32	%
Sma3	Pyrimidine metabolism	00240	9.477e-32	%
Sma3	Metabolic pathways	01100	9.477e-32	%

Source	Gene names
Sma3	At1g68990; At2g24120; At5g15700; BoB028L01.020; CHLREDRAFT_111616; F14F8_80; GSVIVT00002858001; GSVIVT00013890001; GSVIVT00017168001; GSVIVT00021161001; GSVIVT00038106001; MICPUCDRAFT_17826; MICPUN_83775; NEP; NEP1; OJ1058_F03.15-1; OSJNBa0069P02.30-1; OS

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3		GO:0006350	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	DNA-directed RNA polymerase, phage-type	IPR002092	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3		IPR015706	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G15700.2	-	66%
RefSeq	Arabidopsis thaliana	NP_197074.1	DNA-directed RNA polymerase 2 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002315996.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB05

Fln msg: your sequence is longer than subject: 676 - 255

Fln protein: MNKQKGRIVRTIVKNRDDSKPWGNALQAKVGSRLIELLLQASFIQPPVDQSAEGPPEIRPAFKHTLKTVMMGQKIVKRYGVIECDPLVKRGLERTARHMVIPYMPMLVKPIPWTGYDKGGYLILPSQVMRTHGAKQQREAMKKVQKCQVERVYQALDILGSTKWRINKRILDVVDRLWAGGGRLADLVDREDVSIPEKPDTEDEAEIKRWKWRLKKAKKTNSEMHAQRCDVELKLAVARKMKDEEFFYYPHNLDFRGRAYPMHPYLNHLGSDICRGILEFAEGRPLGKTGLYWLKIHLANLYGGGVDKYSFEGRLTFIEDNINNIIDSAEMPLEGERWWLEAEDPFQCLSACMDLTDALKSSSPETSISHMPVHQDGSCNGLQHYAALGRDTLGAVAVNLIGGDKPADVYSGIAARVDEIMQRDALKDPATDRSAECARVLLGQVDRKLVKQTVMTSVYGVTYVGARDQIKKRLKERGFIADEVALYSASCYAAKTTLTALGEMFNSARSIMTWLGDCAKIIASENQPVRWTTPLGLPVIQPYRKFGRQLVKTSLQILALRHETDKVMVNRQKSAFPPNFVHSLDGSHMMMTALACKEAGFSFAGVHDSYWTHAANVEEMNLILREKFVELYSAPILENLLKSFETSFPELDFPPLPDRGDYELNEVLNSPYFFN*

Protein Length: 677

Fln nts: GAACAAACTGTCACTAAGGAACAGCAATTTATTCACAAGCGTTTAAAAGATTTG_-_ATGAATAAACAGAAAGGAAGAATAGTGAGGACGATTGTTAAAAACAGAGATGATTCAAAACCTTGGGGTAATGCTCTGCAGGCCAAGGTGGGAAGTCGTTTGATAGAGCTCCTACTACAAGCAAGCTTCATACAACCTCCTGTTGATCAGTCTGCAGAAGGACCTCCAGAAATTAGACCTGCATTTAAACACACATTGAAGACAGTAATGATGGGACAAAAGATTGTGAAGAGATATGGTGTTATAGAATGTGATCCGCTGGTGAAGAGGGGACTTGAAAGAACGGCAAGGCACATGGTGATCCCTTACATGCCAATGTTGGTCAAACCTATTCCATGGACAGGGTATGATAAGGGAGGTTATTTAATCTTGCCTTCCCAAGTAATGCGCACACATGGGGCAAAGCAGCAACGAGAGGCAATGAAGAAAGTTCAAAAGTGCCAGGTAGAGAGAGTATATCAGGCATTGGATATACTTGGCTCAACAAAATGGAGAATCAATAAAAGAATTCTTGATGTGGTAGATAGGCTTTGGGCAGGAGGAGGTCGCCTTGCAGACTTGGTTGATCGAGAGGATGTGTCCATCCCTGAGAAACCAGATACAGAAGATGAAGCAGAAATTAAGCGTTGGAAATGGCGTTTAAAGAAGGCAAAGAAGACAAATAGTGAGATGCACGCTCAGCGTTGTGATGTAGAGTTAAAACTTGCTGTTGCAAGAAAAATGAAGGACGAAGAATTTTTTTACTATCCACATAACTTGGATTTTCGAGGGCGTGCTTACCCAATGCATCCGTATTTAAATCATCTAGGTTCAGACATATGTCGAGGAATTCTAGAATTTGCTGAGGGTCGACCGTTAGGAAAGACGGGGCTTTATTGGCTGAAGATACATTTGGCCAACTTATATGGTGGTGGTGTAGACAAATATTCTTTTGAGGGCCGACTAACATTTATTGAGGACAACATAAACAATATTATTGACTCAGCAGAGATGCCACTTGAAGGGGAACGATGGTGGTTAGAAGCTGAAGATCCGTTTCAGTGTTTGTCGGCTTGTATGGATCTCACAGATGCATTGAAGAGCTCTTCTCCAGAGACTTCCATCTCTCATATGCCTGTTCATCAGGATGGCTCATGCAATGGTTTGCAGCACTATGCAGCCTTGGGAAGAGATACGTTAGGAGCAGTAGCAGTTAACCTGATTGGTGGTGACAAGCCTGCTGATGTCTACTCGGGAATTGCTGCTAGGGTTGATGAAATCATGCAAAGAGATGCGCTGAAAGACCCCGCAACAGACAGGAGTGCAGAATGTGCGAGAGTGTTACTAGGGCAGGTGGACAGGAAATTAGTGAAGCAGACTGTGATGACTTCAGTCTATGGAGTGACCTATGTTGGTGCTCGTGATCAAATAAAGAAAAGGTTGAAAGAAAGGGGTTTTATTGCGGATGAAGTAGCCCTTTATAGTGCATCTTGCTATGCTGCTAAAACAACTCTTACTGCATTGGGTGAAATGTTTAATTCTGCAAGGAGTATCATGACATGGTTAGGCGATTGTGCCAAGATTATTGCATCTGAAAATCAACCAGTACGGTGGACTACACCACTTGGACTACCAGTTATACAGCCTTACAGAAAATTTGGAAGACAGTTGGTCAAGACATCTCTTCAGATTTTGGCCCTACGGCATGAAACTGATAAGGTTATGGTCAATCGACAAAAAAGTGCATTCCCTCCAAATTTTGTGCACTCACTCGATGGTTCTCATATGATGATGACTGCTCTTGCCTGCAAAGAAGCAGGCTTTAGTTTTGCAGGAGTACATGATTCATATTGGACTCACGCAGCTAATGTTGAGGAAATGAACCTTATACTTAGGGAGAAGTTCGTCGAATTGTACAGTGCACCAATATTGGAAAATTTGCTCAAAAGTTTTGAAACCTCCTTTCCTGAATTGGACTTCCCTCCTTTACCAGATCGAGGAGACTATGAATTGAATGAAGTCTTGAACTCGCCTTACTTCTTCAATTGA___TTTTCAACATGGCGGCATGACTTCTTTACTTCTTTACATTCACTCTTTTGTCGGCTGGAATGGAAGTTGGCAATGTAATATTGGTTTAGTTGGTCCTCATCTGTCATCACTTTTTCTCCTCTGGTGGCAGTCAATTGTATTCTTTTAGTTTGTTATTTTTGTGTGGACATTTTCCACTTGTAGAATTTCTGTTATTTTCTTAGTCCCATATCCTCGGAACGGGAAGTCATAGAAGAGTCGAAACAGATATCAAAAGATTCATCATTACGAGCAAAGATTCGAATGCTTGAACTTTTGTCTTGTATATAATTCTCTAGGATTAAGTTATTAATGCTGGTAAAATTAATGTTCTCCGGAGTGCCAATAATGTGATTTTTACATTTTCTTTTAGTTAAAGGCGCTTTCAATACCTTTTCCGGGACTATTTCTCACATATTGTACGTAACTTGGGTTTTTTAATTTTGAGTCATAAGAGTTCAAAATGAGTCCCACATAGCCACTGTTTCAGGTGACCTATATGGAATTTTCAGTTGAAGCAGATTTGAGAAAGCTGCTGTAAAAGTGAATTTCGAGCATTTATTACCATTTATTACCGCCACTAAAGGAAGGGAATTGCAAGTACGAAATAGCTCTGGCATATTTGATCATAATAATGTACACTACTGGTTCGATTTGAAGACTGGCACTTACATTGCTGGCTTTATACAGAAGTTTGAGCTGATTTTTATTGTTCTCTGCTCTATGAAATAGATTTCTCTCATTCCTACGTTTCTCTTCCTGTAAGAACTCTCGGTATTTTGTAATAACTTCGGACAGTTGTATGTGAAACTTCTTCCAGTACAACGTTCATTTTTGGCTTTGGAGCCCACAATGGTTATATGCTCTTCATAGGCAATCGATTTTAAAATATGCTATACCTTTGGCATATTTGAT

Fln Alignment:

Contig1283___MQRDALKDPATDRSAECARVLLGQVDRKLVKQTVMTSVYGVTYVGARDQIKKRLKERGFIADEVALYSASCYAAKTTLTALGEMFNSARSIMTWLGDCAKIIASENQPVRWTTPLGLPVIQPYRKFGRQLVKTSLQILALRHETDKVMVNRQKSAFPPNFVHSLDGSHMMMTALACKEAGFSFAGVHDSYWTHAANVEEMNLILREKFVELYSAPILENLLKSFETSFPELDFPPLPDRGDYELNEVLNSPYFFN
D5AB05______________MQRDALKDPATDRDAECARVLLGQVDRKLVKQTVMTSVYGVTYIGARDQIRKRLKERGCIADEVALFSASCYAARTTLTALSEMFNAARSIMTWLGDCAKIIASENHPVRWTTPLGLPVVQPYRKFARQLVRTSLQVLALRQETDKVMVKRQKSAFPPNFVHSLDGSHMMMTALACKEAGLSFAGVHDSYWTHAANVEKMNHILREKFVELYSAPILENLLESFETSFPELTFPPLPDRGDFELNEVLNSPYFFN

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
243	87		12		0.992554
1844	33		66		0.997452
1845		66		33	0.997452
1846	66		33		0.997452
1847	66		33		0.997452
1848	66		33		0.997452
2084		14	85		0.993533
2085	85		14		0.993533
2087		14		85	0.993533
2088			14	85	0.993533
2090		85	14		0.993533
2092	85	14			0.993533
2094	85			14	0.993533
2100			85	14	0.993533
2104		14	85		0.993533
2435		33		66	1.0
2835			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain