SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1277

Length: 1690 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene1277 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative tryptophanyl-tRNA synthetase [Oryza sativa Japonica Group] gb\|EAY75781.1\| hypothetical protein OsI_03697 [Oryza sativa Indica Group] gb\|EAZ13498.1\| hypothetical protein OsJ_03415 [Oryza sativa Japonica Group]	-	-	0.0	74%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	79%

Source	Gene names
Sma3	At2g25840; CHLREDRAFT_58645; GSVIVT00032094001; GSVIVT00032095001; MICPUCDRAFT_21200; MICPUN_108728; OSTLU_19560; Os01g0743400; OsI_03697; OsJ_03415; Ot06g02660; P0439E07.32-1; P0439E07.32-2; PHATRDRAFT_15595; PHYPADRAFT_65203; POPTRDRAFT_548153; POPTRDRA

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aminoacyl-tRNA ligase activity	GO:0004812	Molecular Function	-
Sma3	tryptophan-tRNA ligase activity	GO:0004830	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	tRNA aminoacylation for protein translation	GO:0006418	Biological Process	-
Sma3	tryptophanyl-tRNA aminoacylation	GO:0006436	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Aminoacyl-tRNA synthetase, class Ic	IPR002305	-	-
Sma3	Tryptophanyl-tRNA synthetase	IPR002306	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G25840.2	OVA4 Nucleotidylyl transferase superfamily protein chr2:11021924-11025158 FORWARD LENGTH=412	70%
RefSeq	Arabidopsis thaliana	NP_850070.1	tryptophanyl-tRNA synthetase [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002304617.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9GYS4

Fln msg:

Fln protein: MARSMAMALFPRTPCLSSSPSRLCFFNFRQGGTNYLNARRNRLDSAYILAGKPRCYSGSVEDSTISSSSSSSANAIPVKRRVVSGVQPTGSIHLGNYLGAIKNWVSLQDTYETFFFIVDLHAITLPYDAEQLSKTTRDAAAIYIACGIDTSKASVFAQSHVSAHAELTWLLNCVTPIGWLNKMIQFKEKSRKAGDENVGTGLLTYPVLMASDILLYQCDLVPVGDDQKQHLELTRELAERVNFLFGGRKWKKLGGRGGKLFKIPEALISPEGARVMSLTDGLSKMSKSTPSDQSRINLLDTKDIIANKFKRCKTDSFTGLEFGNPDRPECNNLLSIYQLVTGKTKQEVAQECKDMNWGQFKPLIADAVIAHLEPIQARYKEITADSTYLDSVLAEGALKAATIADATLRNVYEAMGFLPCTRR*

Protein Length: 425

Fln nts: ACCCTTGTTAGTGAAAACATGAACTGAGGTAGTCGAGAAAAAGCAGAGATAAGGCGGAAGCAGAGGCCTACCCATATAATTCTGTGGCAA_-_ATGGCAAGGTCAATGGCCATGGCATTGTTTCCACGCACACCTTGCCTGTCCTCTTCGCCTTCTCGTCTCTGCTTCTTCAATTTTCGCCAGGGCGGAACAAATTATTTGAATGCCAGACGTAATCGGCTCGACTCCGCGTATATTCTAGCTGGAAAGCCTCGTTGTTACTCTGGTTCTGTTGAAGATTCAACAATTTCTTCTTCCTCTTCATCATCTGCAAATGCCATTCCCGTCAAGAGAAGGGTTGTTTCAGGCGTGCAACCAACTGGATCAATTCACCTTGGCAACTATCTTGGTGCTATCAAGAATTGGGTTTCTTTGCAGGATACTTATGAAACATTCTTTTTCATTGTGGATCTACATGCGATTACTTTACCATATGATGCTGAGCAGTTGTCAAAGACAACGAGGGATGCAGCAGCCATATATATAGCTTGTGGAATTGATACCTCAAAGGCATCGGTTTTTGCACAATCACATGTCTCGGCCCATGCAGAGCTCACATGGTTGCTAAATTGCGTCACACCGATTGGGTGGTTGAATAAAATGATACAATTCAAAGAGAAATCTCGCAAGGCGGGGGATGAGAATGTGGGGACGGGGTTGCTGACTTATCCTGTTCTTATGGCTTCAGACATCCTTCTATATCAGTGCGATTTAGTGCCAGTGGGCGATGATCAAAAGCAGCATCTAGAGTTGACACGTGAATTAGCAGAGCGGGTGAATTTTCTGTTTGGGGGTAGGAAATGGAAAAAACTTGGAGGACGTGGAGGAAAACTCTTTAAGATTCCTGAAGCACTCATTTCACCAGAAGGAGCTCGTGTTATGTCTCTTACAGATGGGCTGTCAAAGATGTCAAAATCAACGCCCTCTGATCAGTCTCGAATCAACCTTCTTGATACAAAAGATATAATAGCCAACAAATTCAAGCGTTGCAAAACAGATTCTTTCACCGGATTGGAATTTGGCAATCCAGACAGACCAGAATGCAATAATCTTCTTTCTATATATCAACTGGTAACTGGGAAGACTAAGCAGGAGGTTGCCCAAGAATGCAAGGACATGAATTGGGGACAATTCAAGCCTCTCATTGCTGATGCTGTAATTGCACATCTGGAACCTATTCAGGCACGATACAAAGAGATTACTGCAGATTCTACCTACTTGGATAGTGTTCTGGCAGAAGGAGCTCTGAAGGCGGCCACTATAGCAGACGCCACTTTAAGGAACGTATACGAGGCTATGGGCTTTCTACCTTGCACACGACGCTAG___CATTTCAATTGCATGATCTGGGAAGAGTATTTATGTTCCTATAGCAATTAAGCATTTATTTTTTTACTATTTATCTGCCAAGATTTTCTCGTCTTATTGTTCCAAAAAAGCACTGACAATAAAATGTTAGATTCCTCAAAGTTCCAATATTTTTGTGGAGCGAATAGAAGAAAAAGCATTAGTTGAAAGGATCTCAGAGATAGATAGCATTAATAAATATCGATTGCATATTTGCAACCCTCTGAAGGTTGCATGAATTTTGTAATGGTAGTTGTTATAACATTTAATGACAAGCACACCAAACAATTCAAACATTATTATGTAAGCA

Fln Alignment:

Contig1277___AIPVKRRVVSGVQPTGSIHLGNYLGAIKNWVSLQDTYETFFFIVDLHAITLPYDAEQLSKTTRDAAAIYIACGIDTSKASVFAQSHVSAHAELTWLLNCVTPIGWLNKMIQFKEKSRKAGDENVGTGLLTYPVLMASDILLYQCDLVPVGDDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXXXXKIPEALISPEGARVMSLTDGLSKMSKSTPSDQSRINLLDTKDIIANKFKRCKTDSFTGLEFGNPDRPECNNLLSIYQLVTGKTKQEVAQECKDMNWGQFKPLIADAVIAHLEPIQARYKEITADSTYLDSVLAEGALKAATIADATLRNVYEAMGFL
B9GYS4______________SVTVKKRIVSGVQPTGSVHLGNYLGAIKNWIALQNTYETLFFIVDLHAITLPYDTKELSKATRDTAAIYLACGIDASKASVFVQSHVHAHVELMWLLSSATPIGWLNRMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSFPALEFDNPERPECNNLLSVYQLVSGKTKEDVAKECQGLNWGSFKPLLTDALIEHLHPIQVRYEEIHSDSAYLDSVLEEGARKASEIADATLKNVYQAMGFL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1190		60		40	1.0
1200		20		80	0.995493
1343		80		20	0.995493
1394	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain