SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1263

Length: 1894 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1263

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pyruvate dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9S0Z5_RICCO	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Transketolase, C-terminal	IPR005476	-	-
Sma3	Transketolase-like, C-terminal	IPR015941	-	-
Sma3	Transketolase-like, pyrimidine-binding domain	IPR005475	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G34590.1	Transketolase family protein chr2:14568956-14570844 REVERSE LENGTH=406	79%
RefSeq	Arabidopsis thaliana	NP_181006.1	pyruvate dehydrogenase E1 component subunit beta [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002324031.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWM3

Fln msg:

Fln protein: MASSAMAQGLGGFTARMPSFSSSNRLQLGFSKPSPEWKRSSIMIRLDASFSQYSNSRKRASKLVPSAVAVKDATATSPATSKTGHELLLFDALREGLDEEMERDPRVCVMGEDVGHYGGSYKVTKGMAEKYGDLRVLDTPIAENSFTGMGVGAAMTGLRPVIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPVVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKEKIPDEEYVCCLEEAEMVRPGADITILTYSRMRYHVMQAAKTLVNKGYDPEIIDIRSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRAAIIENFWDYLDAPIMCLSSQDVPTPYAGTLEDWTVVQPPQIVSAVEQLCQ*

Protein Length: 409

Fln nts: TGGTGAAATGAATATTTGATCGTTATAGGAGAGAAGCCCTTTCTACCCGATCTCACTCAACCTAACCAATTTTGAAAAATCTAAGAAGTTAACGAAGGCGTCACAAACAATGTCGTTGTTGCATGTGCACACTTAAAACAAATACAAATGGCCAGTGGGGAGAAACACAGTAGGAAATCCATAGATACAGATATTATGTACAAAGAGTTTGCATTGCTGTAACAACAGCTGCAATTGCCCCGATACAAAGGCAGTTGCATAAGTGCCCACTTCGGAATTTGTGAGTTTCAGTCTGCAATTTTTTCCAA_-_ATGGCGAGCTCTGCCATGGCTCAAGGGTTGGGAGGGTTTACAGCCCGAATGCCTTCTTTTTCTTCCTCTAACAGATTGCAGCTAGGCTTCTCCAAGCCTTCACCAGAATGGAAGAGGAGTTCAATTATGATCAGATTGGATGCTTCGTTTTCTCAATATTCAAATTCAAGGAAACGAGCTTCGAAATTGGTTCCCAGTGCTGTGGCGGTGAAGGATGCGACTGCTACAAGTCCTGCAACATCAAAGACTGGGCACGAGCTGCTCTTGTTTGACGCTCTTCGTGAAGGTTTGGATGAGGAGATGGAGAGGGATCCTCGAGTTTGTGTCATGGGGGAGGATGTTGGCCATTATGGAGGTTCTTACAAAGTAACCAAGGGCATGGCTGAAAAATATGGTGATTTGAGGGTGCTCGATACACCCATAGCTGAAAATTCTTTCACAGGGATGGGTGTTGGTGCTGCCATGACAGGGTTAAGGCCTGTTATTGAAGGAATGAATATGGGTTTTCTGCTATTGGCATTCAATCAGATATCAAATAATTGTGGCATGCTTCATTACACTTCAGGTGGACAGTTTACTATTCCTGTGGTTATTCGAGGCCCTGGTGGGGTGGGGAGACAGTTAGGTGCGGAGCATTCACAACGGCTAGAATCTTATTTTCAGTCTGTTCCTGGATTGCAGATGGTTGCTTGCTCCACTCCATACAATGCAAAAGGGCTGATGAAAGCAGCAATCAGAAGTGAGAATCCCGTTATCTTGTTTGAGCATGTTCTTCTTTACAACTTGAAAGAGAAGATACCAGATGAAGAATATGTGTGTTGTCTTGAAGAAGCAGAAATGGTGCGTCCAGGTGCAGATATAACCATTCTGACTTATTCTCGTATGAGATACCATGTGATGCAGGCAGCGAAGACCTTAGTGAATAAGGGATATGATCCAGAGATAATTGACATCCGCTCTTTGAAGCCATTTGACTTGCACACAATTGGGAATTCAATAAAGAAGACACATAGAGTGCTGATTGTTGAAGAGTGCATGCGTACTGGTGGCATTGGAGCGAGTCTCAGGGCTGCAATTATTGAAAACTTCTGGGACTATTTAGATGCACCCATCATGTGCTTATCTTCACAGGATGTTCCAACACCATATGCAGGCACACTAGAGGACTGGACAGTGGTGCAACCTCCTCAAATTGTATCAGCGGTTGAGCAGCTTTGTCAATAG___GCTTCGTTTTTCTTTGACCAATGCAAAAGCCTTGGATCAAGTTGCAGGCCCATTGAAATTTTGGGTTGTTTATTGTTTTTCATAAAATTCATTTACCTTTATCTCAACATTGTTCTAAGTTAGTAGTGTTTACTTTAATTTGGTTCTAGAGTTTAGTAGTGTTTATTATATTTATTATTAGATATGAAAATTCACAGTTTCTTTAAAACTGTTGGATCAGTCGCCTTGTTATCCGCCTAAATATTCCGATAATACAAGATTTGACATTGCTCACATTGCTGTTATTCTAGCTTTAATGTATTTTGCTAAGATATTAGAGTTTGTTATGGAGACACTGTCTCTTACATTATGCTCCCATTTTA

Fln Alignment:

Contig1263___MASSAMAQGLGGFTARMPSFSSSNRLQLGFSKPSPEWKRSSIMIRLDASFSQYSNSRKRASKLVPSAVAVKDATATSPATSKTGHELLLFDALREGLDEEMERDPRVCVMGEDVGHYGGSYKVTKGMAEKYGDLRVLDTPIAENSFTGMGVGAAMTGLRPVIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKEKIPDEEYVCCLEEAEMVRPGADITILTYSRMRYHVMQAAKTLVNKGYDPEIIDIRSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRAAIIENFWDYLDAPIMCLSSQDVPTPYAGTLEDWTVVQPPQIVSAVEQLCQ
A9NWM3______________MASSAMAQGVGGITALMPSFSSSNRLQLGFSKHLPEWKRSSIAIRLDASFSQSSNSRKRASKLVTSAVVVKDETATSPATSKTGHELLLFEALREGLDEEMERDPRVCVVGEDVGHYGGSYKVTKGMAEKYGDLRVLDTPIAENSFTGMGVGAAMTGLRPVIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPVVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKEKIPDEEYVCCLEEAEMVRPGADVTILTYSRMRYHVMQAAKTLVNKGYDPEIIDIRSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRAAIIENFWDYLDAPIMCLSSQDVPTPYAGTLEDWTVVQPPQIVSAVEQICQ

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
223		25		75	0.996473
224	75			25	0.996473
229		25	75		0.996473
239		20		80	0.995493
243	80			20	0.995493
282			14	85	0.993533
283		14	85		0.993533
284	85			14	0.993533
287		14		85	0.993533
298	80			20	0.995493
330			80	20	0.995493
342	20		80		0.995493
343		20	80		0.995493
345			83	16	0.994512
346			83	16	0.994512
435	80		20		0.995493
474	16		83		0.994512
560		40		60	1.0
749		11		88	0.923564
767	90			10	0.90298
773		90		10	0.90298
815	10			90	0.90298
816		10		90	0.90298
854		11		88	0.923564
913	14	85			0.993533
917			14	85	0.993533
1043	83			16	0.994512
1046		83		16	0.994512
1546		30		60	1.0
1569			88	11	0.923564
1573	11	88			0.923564
1604			25	75	0.996473
1635			33	66	0.997452
1644	87			12	0.992554
1651		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain