SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1243

Length: 3732 nt

UniGene Fasta

>sp_v3.0_unigene1243
GATTCTTTGGATTGTGTATTTTGTGGAGAGCCGGAAAAATCGAAAGAAGCCCTGTTCCCCGATCCCCATTGGACACAATCTCTGTGTCAAGCCATTCTGTGTCATGGCCGGTGAGAAAAGGCAGCCATTGCAGCCGAGCAATAGCGCGAACATTCCACAAGCCAGTAGCAATGGCGTCAAGGGCAAAACCATCGAAGAAACATACCAGAAGAAGACTCAGCTGGAGCACATCCTGCTTCGTCCCGACACCTATGTTGGCTCCATTGAGAAGCATACCCAGACCCTCTGGGTTTACGAAGGAAATGAGATGGTTCAACGCAGCATATCATACGTGCCGGGTCTCTACAAGATCTTCGACGAGATCCTCGTCAATGCGGCCGATAACAAGCAGCGGGATCCCTCCATGGATTCCATGAAGGTGACCATCAGCGTCGAGGATAATTGCATCAGCGTTTACAACAACGGAGACGGTGTTCCCGTGGAGATTCACCAGGAGGAGGGCGTGTATGTGCCGGAGATGATCTTTGGGCATCTGTTAACGAGCAGTAACTACGATGACTCTGAGAAGAAGACCACTGGTGGAAGGAATGGGTATGGTGCCAAGCTTGCTAATATCTTTTCTACCGAGTTTATTATTGAGACCGCCGATGGGAAGAGGCAGAAAAGGTATAAGCAGGTTTTCAAGAACAATATGGGTGTTAAGTCGGACCCGGTCATTACAAAGTGCAAGCCGGCAGAGAATTGGACCAAGGTCACATTTAAGCCCGATTTGATTAAGTTTAACATGACCCATCTGGAAGATGATGTTGTTGCCCTGATGAAGAAGAGAGTTGTGGATGTAGCTGGATGCCTTGGGAAGACAGTTAAGGTTGAGTTGAATGGACAACGGTTGCCTGTCAAGACCTTTCAAGATTATATTGGCCTATACCTGCAAACAGCTAACAAATCGAAGCCAGAGCCTCTACCAAGAATTTATGAAAAAGTAAGTGACAGATGGGAGATTTGTGTGAGCCTAAGTGATGGACAGTTTCAACAGGTTAGCTTTGTTAATGGAATAGCTACCATTAAAGGTGGTTCCCACGTTGATTTAGTAGCAAACCAGATAACAACCCATGTGATGAACATTGTAAATAAGAAGAACAAGACAGCTGCGGTGAAAGCACACACAATCAAGAATCATTTATGGATCTTTGTCAATGCTTTGATTGACAATCCTGCTTTTGACTCTCAAACCAAGGAGACACTGACAACTCGTCAGAACAGCTTTGGTTCAAAGTGTGAACTCTCTCAAGAGTTTTTGAAGAAAGTTGCTAAATGTGGAGTAGTCGAGAACATATTATCATGGGCAGACTTCAAACAGAGCAAGGATCTTAAGAAAACTGATGGAACCAAGAGACAAAGGTTAACTGGTATAACCAAGCTTGATGATGCAAATGATGCAGGGAGCAAGAATTCTGAGAAATGTACTCTGATTTTAACTGAGGGAGATTCAGCCAAGGCCCTTGCGATGGCAGGGTTGGCTGTTGTTGGTCGAAACCATTATGGCGTGTTTCCTCTCAGAGGTAAGTTGCTGAATGTAAGGGAAGCCAGCCATAAACAGATCATGGAAAATGCGGAGATTCAACATATCAAGCAAATCCTTGGTCTGCAACATGGAAAGGAATATGACAGTGTCAAATCTCTGAGATATGGACATCTTATGATTATGACAGATCAGGATCATGATGGTTCACACATAAAAGGATTGCTGATAAACTTCATACATTCTTTCTGGCCATCTCTACTCAAGATTCCTTCATTTCTTGTTGAATTCATCACTCCTATTGTCAAGGCAACCCATAAAGATGGACGGATATTGTCTTTCTATACCATGCCTGAGTATGAATCATGGAGAGAGTCTCTGGGTGGATCAGCATCAGGATGGACCATAAAGTACTATAAAGGTCTCGGTACAAGTACTTCTAAAGAGGGGAAAGAATATTTTAAAAATTTGGACAGACATAAAAAAGACTTCATGTGGATTAACGAGGAAGATGGAGATGCAATTGAATTAGCCTTCAGCAAGAAGAAAATAGAGGCCAGAAAGAACTGGCTAAGACATTTTGAGCCGGGAACATATTTGGACCAGACTGACAAACTTATCAAGTACAGCGACTTTGTAAACAAGGAACTGATCCTATTTTCCATGGCTGATTTGCAAAGATCCATCCCATCCATGGTTGATGGTTTGAAACCAGGGCAAAGAAAAATCTTGTTTTGTTCTTTCAAGAGAAATTTTGTTACGCAAGCAAAGGTGGCTCAATTCTCGGGTTATGTCTCAGAGCATTCTGCTTACCATCACGGTGAGCAGAGTCTTGCTAGCACAATTATTGGAATGGCACAAGATTATGTTGGAAGTAACAACATTAACCTTCTTGCTCCACTTGGACAATTTGGTACCAGAGCCCAGGGTGGAAAAGATCATGCAAGTGCTCGATATGTTTTCACATGCCTATCACCAATAACACGCTTCTTGTTCCCAAAAGACGATGATGTACTCTTGGATTACTTGAATGAAGATGGCCAGAAAATTGAGCCAACGTGGTATGTGCCAATTATTCCGATGGTCCTTGTGAATGGAAGTGAAGGAATTGGAACTGGTTGGAGTTCCTTTATACCTAACTACAACCCAAGGGATATTGCCGCAAATATAAAGCGCATGCTTAATGATGAACCCTTGCAGCCAATGACACCTTGGTACAAGGGTTTTAAGGGTACAATTGAACAAACAGCTGTAAAGGATAATTGTGTGAGTTACACGATTAGTGGCATCATAGAGGAAATTAATGAGACCACGCTGAGAATTACAGAGTTGCCCGTTCGCAAGTGGACTCAGGATTACAAGGAATTTTTGGAAGCGTTGATGACTGGGAATGATAAGATTAAAGATCCATTCATAAGGGACTACAAGGAATACAATACTGATACCAGGGTCCATTTTGAGGTGTCACTGTCTGAAGAGAATATGAAGATTGCACTTCAAGAGGGTCTTTTAAAGAAATTCAAACTGACTACTACAGTCAGTACAAGTAACATGCATCTTTTTGACTCAAAGGGAATCATTCATAAATATGAGACCCCTGAGCAAGTTCTGGAGGACTTCTATCATATCCGACTGGAATTCTATGAAAAGAGAAAGAAAGTCCAATTGGACAACCTTCAGCTTGATTTGCTGAAATTGGACAATAAAGTTAGATTCATACTGGGGGTTGTAAATGGAGAAATCATAGTGAGCAACAGGAAACGTGCAGAGTTGCTGCTTGAATTGAAGAACAAAGGTTTCACCCCATTCCCCAAGAAGGGAAAACCTGTTGAGGCAGCTATTGCCGGGGCAATAGAAGATGATGAAGAGTCTCCTGAAGACAACATTGAGACAGTAAAGGGTGTTCGTGCTGGAGATTATGAGTATCTTCTATCCATGGCAATAGGAACATTGACTTTAGAAAAGGTGCAGCAATTATGTGCTGAACGAGACAAGCTTGAGGATGACGTTGAGGAGCTTAAAAAGGCAACACCCAAATCTCTATGGTGGAAAGACTTGGATGCCTTTACAAAGGAGTTGGATGCTCAAGAACTACAGGAGGCCAAGGATGATGAATATGAATTGAGCAACATGGGAAATGATGCTGCCAGAATCTTCAGACAAGTAGGCAAAAACCAGAGAAAAAATACCAAAAAAACTGTAACTGCTGA

Ace file of the UniGene sp_v3.0_unigene1243

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%

Source	ECs	Term	Type	e value	Identity
Sma3	DNA topoisomerase (ATP-hydrolyzing).	EC:5.99.1.3	-	0.0	-

Source	Gene names
Sma3	GSVIVT00028763001;

Source	GOs	Term	Type	Identity
Sma3	chromosome	GO:0005694	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	DNA topoisomerase (ATP-hydrolyzing) activity	GO:0003918	Molecular Function	-
Sma3	DNA topological change	GO:0006265	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	DNA topoisomerase, type IIA, subunit A/C-terminal	IPR002205	-	-
Sma3	DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta	IPR013758	-	-
Sma3	DNA topoisomerase, type IIA, subunit A, alpha-helical	IPR013757	-	-
Sma3	DNA topoisomerase, type IIA	IPR001241	-	-
Sma3	DNA topoisomerase, type IIA, subunit B/N-terminal, alpha-beta	IPR013759	-	-
Sma3	DNA topoisomerase, type IIA, subunit B, domain 2	IPR013506	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G23890.1	TOPII, ATTOPII topoisomerase II chr3:8624931-8631106 FORWARD LENGTH=1473	69%
RefSeq	Arabidopsis thaliana	NP_001118686.1	DNA topoisomerase 2 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002314046.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE71

Fln msg: Distance to subject end: 343 aas, your sequence is longer than subject: 1209 - 435

Fln protein: MAGEKRQPLQPSNSANIPQASSNGVKGKTIEETYQKKTQLEHILLRPDTYVGSIEKHTQTLWVYEGNEMVQRSISYVPGLYKIFDEILVNAADNKQRDPSMDSMKVTISVEDNCISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDSEKKTTGGRNGYGAKLANIFSTEFIIETADGKRQKRYKQVFKNNMGVKSDPVITKCKPAENWTKVTFKPDLIKFNMTHLEDDVVALMKKRVVDVAGCLGKTVKVELNGQRLPVKTFQDYIGLYLQTANKSKPEPLPRIYEKVSDRWEICVSLSDGQFQQVSFVNGIATIKGGSHVDLVANQITTHVMNIVNKKNKTAAVKAHTIKNHLWIFVNALIDNPAFDSQTKETLTTRQNSFGSKCELSQEFLKKVAKCGVVENILSWADFKQSKDLKKTDGTKRQRLTGITKLDDANDAGSKNSEKCTLILTEGDSAKALAMAGLAVVGRNHYGVFPLRGKLLNVREASHKQIMENAEIQHIKQILGLQHGKEYDSVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATHKDGRILSFYTMPEYESWRESLGGSASGWTIKYYKGLGTSTSKEGKEYFKNLDRHKKDFMWINEEDGDAIELAFSKKKIEARKNWLRHFEPGTYLDQTDKLIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFVTQAKVAQFSGYVSEHSAYHHGEQSLASTIIGMAQDYVGSNNINLLAPLGQFGTRAQGGKDHASARYVFTCLSPITRFLFPKDDDVLLDYLNEDGQKIEPTWYVPIIPMVLVNGSEGIGTGWSSFIPNYNPRDIAANIKRMLNDEPLQPMTPWYKGFKGTIEQTAVKDNCVSYTISGIIEEINETTLRITELPVRKWTQDYKEFLEALMTGNDKIKDPFIRDYKEYNTDTRVHFEVSLSEENMKIALQEGLLKKFKLTTTVSTSNMHLFDSKGIIHKYETPEQVLEDFYHIRLEFYEKRKKVQLDNLQLDLLKLDNKVRFILGVVNGEIIVSNRKRAELLLELKNKGFTPFPKKGKPVEAAIAGAIEDDEESPEDNIETVKGVRAGDYEYLLSMAIGTLTLEKVQQLCAERDKLEDDVEELKKATPKSLWWKDLDAFTKELDAQELQEAKDDEYELSNMGNDAARIFRQVGKNQRKNTKKTVTA

Protein Length: 1210

Fln nts: GATTCTTTGGATTGTGTATTTTGTGGAGAGCCGGAAAAATCGAAAGAAGCCCTGTTCCCCGATCCCCATTGGACACAATCTCTGTGTCAAGCCATTCTGTGTC_-_ATGGCCGGTGAGAAAAGGCAGCCATTGCAGCCGAGCAATAGCGCGAACATTCCACAAGCCAGTAGCAATGGCGTCAAGGGCAAAACCATCGAAGAAACATACCAGAAGAAGACTCAGCTGGAGCACATCCTGCTTCGTCCCGACACCTATGTTGGCTCCATTGAGAAGCATACCCAGACCCTCTGGGTTTACGAAGGAAATGAGATGGTTCAACGCAGCATATCATACGTGCCGGGTCTCTACAAGATCTTCGACGAGATCCTCGTCAATGCGGCCGATAACAAGCAGCGGGATCCCTCCATGGATTCCATGAAGGTGACCATCAGCGTCGAGGATAATTGCATCAGCGTTTACAACAACGGAGACGGTGTTCCCGTGGAGATTCACCAGGAGGAGGGCGTGTATGTGCCGGAGATGATCTTTGGGCATCTGTTAACGAGCAGTAACTACGATGACTCTGAGAAGAAGACCACTGGTGGAAGGAATGGGTATGGTGCCAAGCTTGCTAATATCTTTTCTACCGAGTTTATTATTGAGACCGCCGATGGGAAGAGGCAGAAAAGGTATAAGCAGGTTTTCAAGAACAATATGGGTGTTAAGTCGGACCCGGTCATTACAAAGTGCAAGCCGGCAGAGAATTGGACCAAGGTCACATTTAAGCCCGATTTGATTAAGTTTAACATGACCCATCTGGAAGATGATGTTGTTGCCCTGATGAAGAAGAGAGTTGTGGATGTAGCTGGATGCCTTGGGAAGACAGTTAAGGTTGAGTTGAATGGACAACGGTTGCCTGTCAAGACCTTTCAAGATTATATTGGCCTATACCTGCAAACAGCTAACAAATCGAAGCCAGAGCCTCTACCAAGAATTTATGAAAAAGTAAGTGACAGATGGGAGATTTGTGTGAGCCTAAGTGATGGACAGTTTCAACAGGTTAGCTTTGTTAATGGAATAGCTACCATTAAAGGTGGTTCCCACGTTGATTTAGTAGCAAACCAGATAACAACCCATGTGATGAACATTGTAAATAAGAAGAACAAGACAGCTGCGGTGAAAGCACACACAATCAAGAATCATTTATGGATCTTTGTCAATGCTTTGATTGACAATCCTGCTTTTGACTCTCAAACCAAGGAGACACTGACAACTCGTCAGAACAGCTTTGGTTCAAAGTGTGAACTCTCTCAAGAGTTTTTGAAGAAAGTTGCTAAATGTGGAGTAGTCGAGAACATATTATCATGGGCAGACTTCAAACAGAGCAAGGATCTTAAGAAAACTGATGGAACCAAGAGACAAAGGTTAACTGGTATAACCAAGCTTGATGATGCAAATGATGCAGGGAGCAAGAATTCTGAGAAATGTACTCTGATTTTAACTGAGGGAGATTCAGCCAAGGCCCTTGCGATGGCAGGGTTGGCTGTTGTTGGTCGAAACCATTATGGCGTGTTTCCTCTCAGAGGTAAGTTGCTGAATGTAAGGGAAGCCAGCCATAAACAGATCATGGAAAATGCGGAGATTCAACATATCAAGCAAATCCTTGGTCTGCAACATGGAAAGGAATATGACAGTGTCAAATCTCTGAGATATGGACATCTTATGATTATGACAGATCAGGATCATGATGGTTCACACATAAAAGGATTGCTGATAAACTTCATACATTCTTTCTGGCCATCTCTACTCAAGATTCCTTCATTTCTTGTTGAATTCATCACTCCTATTGTCAAGGCAACCCATAAAGATGGACGGATATTGTCTTTCTATACCATGCCTGAGTATGAATCATGGAGAGAGTCTCTGGGTGGATCAGCATCAGGATGGACCATAAAGTACTATAAAGGTCTCGGTACAAGTACTTCTAAAGAGGGGAAAGAATATTTTAAAAATTTGGACAGACATAAAAAAGACTTCATGTGGATTAACGAGGAAGATGGAGATGCAATTGAATTAGCCTTCAGCAAGAAGAAAATAGAGGCCAGAAAGAACTGGCTAAGACATTTTGAGCCGGGAACATATTTGGACCAGACTGACAAACTTATCAAGTACAGCGACTTTGTAAACAAGGAACTGATCCTATTTTCCATGGCTGATTTGCAAAGATCCATCCCATCCATGGTTGATGGTTTGAAACCAGGGCAAAGAAAAATCTTGTTTTGTTCTTTCAAGAGAAATTTTGTTACGCAAGCAAAGGTGGCTCAATTCTCGGGTTATGTCTCAGAGCATTCTGCTTACCATCACGGTGAGCAGAGTCTTGCTAGCACAATTATTGGAATGGCACAAGATTATGTTGGAAGTAACAACATTAACCTTCTTGCTCCACTTGGACAATTTGGTACCAGAGCCCAGGGTGGAAAAGATCATGCAAGTGCTCGATATGTTTTCACATGCCTATCACCAATAACACGCTTCTTGTTCCCAAAAGACGATGATGTACTCTTGGATTACTTGAATGAAGATGGCCAGAAAATTGAGCCAACGTGGTATGTGCCAATTATTCCGATGGTCCTTGTGAATGGAAGTGAAGGAATTGGAACTGGTTGGAGTTCCTTTATACCTAACTACAACCCAAGGGATATTGCCGCAAATATAAAGCGCATGCTTAATGATGAACCCTTGCAGCCAATGACACCTTGGTACAAGGGTTTTAAGGGTACAATTGAACAAACAGCTGTAAAGGATAATTGTGTGAGTTACACGATTAGTGGCATCATAGAGGAAATTAATGAGACCACGCTGAGAATTACAGAGTTGCCCGTTCGCAAGTGGACTCAGGATTACAAGGAATTTTTGGAAGCGTTGATGACTGGGAATGATAAGATTAAAGATCCATTCATAAGGGACTACAAGGAATACAATACTGATACCAGGGTCCATTTTGAGGTGTCACTGTCTGAAGAGAATATGAAGATTGCACTTCAAGAGGGTCTTTTAAAGAAATTCAAACTGACTACTACAGTCAGTACAAGTAACATGCATCTTTTTGACTCAAAGGGAATCATTCATAAATATGAGACCCCTGAGCAAGTTCTGGAGGACTTCTATCATATCCGACTGGAATTCTATGAAAAGAGAAAGAAAGTCCAATTGGACAACCTTCAGCTTGATTTGCTGAAATTGGACAATAAAGTTAGATTCATACTGGGGGTTGTAAATGGAGAAATCATAGTGAGCAACAGGAAACGTGCAGAGTTGCTGCTTGAATTGAAGAACAAAGGTTTCACCCCATTCCCCAAGAAGGGAAAACCTGTTGAGGCAGCTATTGCCGGGGCAATAGAAGATGATGAAGAGTCTCCTGAAGACAACATTGAGACAGTAAAGGGTGTTCGTGCTGGAGATTATGAGTATCTTCTATCCATGGCAATAGGAACATTGACTTTAGAAAAGGTGCAGCAATTATGTGCTGAACGAGACAAGCTTGAGGATGACGTTGAGGAGCTTAAAAAGGCAACACCCAAATCTCTATGGTGGAAAGACTTGGATGCCTTTACAAAGGAGTTGGATGCTCAAGAACTACAGGAGGCCAAGGATGATGAATATGAATTGAGCAACATGGGAAATGATGCTGCCAGAATCTTCAGACAAGTAGGCAAAAACCAGAGAAAAAATACCAAAAAAACTGTAACTGCTGA

Fln Alignment:

Contig1243___MAIGTLTLEKVQQLCAERDKLEDDVEELKKATPKSLWWKDLDAFTKELDAQELQEAKDDEYELSNMGNDAARIFRQVGKNQRKNTKKTVTA
D5AE71______________MAIGTLTLEKVQQLCAERDKLEDDVEELKKETPKSLWCKDLDAFTKELDAQDLQEAKDDEYELSNMGNDAARIFRQVGKNQRKNTKKTVTA

SNPs (tot: 81)

Position	A %	C %	G %	T %	Probability
320		66	33		0.997452
326	66	33			0.997452
335			33	66	0.997452
344		66		33	0.997452
353		66		33	0.997452
359		33		66	0.997452
380		33		66	0.997452
404		66		33	0.997452
414	33		66		0.997452
431		33		66	0.997452
434		33	33	33	0.997753
464		75		25	0.996473
470		75		25	0.996473
810	14		85		0.993533
811	14			85	0.993533
814		85		14	0.993533
890	16		83		0.994512
921	20		80		0.995493
922		20	80		0.995493
923	20	80			0.995493
924		80		20	0.995493
1330		33		66	0.997452
1351	33			66	0.997452
1363			75	25	0.996473
1364	75		25		0.996473
1366		75	25		0.996473
1465	80		20		0.995493
1472		80		20	0.995493
1484	80			20	0.995493
1499		20		80	0.995493
1550		20		80	0.995493
1618		80		20	0.995493
1619			80	20	0.995493
1655	28		71		1.0
1667	14		85		0.993533
1698	14	85			0.993533
1743	28			71	1.0
1758	47	47		5	1.0
1764		50		50	1.0
1770		50		50	1.0
1788	52		47		1.0
1821		58		41	1.0
1858	66		25		1.0
1902	27		72		1.0
1915	20			80	0.999996
1968		11		88	0.923564
2118	25		75		0.996473
2142	25		75		0.996473
2256	50	50			1.0
2289	25		75		0.996473
2393	77			22	0.999999
2532		40		40	1.0
2533		20	80		0.995493
2536			80	20	0.995493
2550		50		50	1.0
2604		33		66	1.0
2607	33		66		1.0
2659	66		33		0.997452
2661	66		33		0.997452
2699	83		16		0.994512
2958	77		22		0.999999
2995		75		25	1.0
3016	66		33		1.0
3030	33		66		1.0
3050	33		66		1.0
3051	33		66		1.0
3054	33		66		1.0
3057		33		66	1.0
3063	33		66		1.0
3064	33		66		1.0
3069		33		66	1.0
3074		33	66		1.0
3087			33	66	1.0
3168	11	88			0.923564
3227	87	12			0.992554
3252	10		90		0.90298
3273	81			18	0.999994
3386	86		13		0.999973
3548	83	16			0.994512
3550	83			16	0.994512
3551	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain