SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1211

Length: 1578 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1211

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana] ref\|NP_198485.2\| 2-phosphoglycolate phosphatase 1 [Arabidopsis thaliana] ref\|NP_001119316.1\| 2-phosphoglycolate phosphatase 1 [Arabidopsis thaliana] ref\|NP_001119318.1\|	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	phosphatase activity	GO:0016791	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	HAD-superfamily hydrolase, subfamily IIA	IPR006357	-	-
Sma3	2-phosphoglycolate phosphatase, eukaryotic	IPR006349	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G36700.1	ATPGLP1, PGLP1 2-phosphoglycolate phosphatase 1 chr5:14421929-14424430 REVERSE LENGTH=362	78%
RefSeq	Arabidopsis thaliana	NP_001190428.1	haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002315115.1	predicted protein [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVC8

Fln msg:

Fln protein: MLSKGAMVAATVTSTFCFRCYNRQSLHDITLFPSFNRLKTSQIASSKAGALRVSSSRPISAMANATRNSSGKAAAPLLSDAEELINSVETFIFDCDGVIWKGDSLIAGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVGEEEIFASSFAAAAYLESIDFPPDKKVYVIGEIGILKELELAGFKYLGGPEDGDKRIELKPGFLLEQDKDVGAVVVGFDRYVNYYKIQYGTLCIRENPGCLFIATNCDAVTHLTDAQEWAGGGSMVGALRGSTQKEPIVVGKPSTFMMDYVSKKFQISKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTTLPMLQNPANSIQPDFYTNKVSDLLIKKVANV*

Protein Length: 373

Fln nts: GCTCAACATGTTTCAGTATGCCAGCCACCTCATATTTGTTCCACCAGAAATGCTAAGATATGGTGAGTAGATAGAGTTTCTCAGCCACATATCGTTTTCCATTCATGGAAAGACATTCAAATTTAATTGGAAAACGATGATGGTTCGGCAGGTGACGTGAAACCAGAACACATAGT_-_ATGTTGAGCAAGGGAGCTATGGTGGCTGCGACGGTAACATCGACTTTTTGCTTTCGGTGCTATAATCGACAATCGCTACATGATATCACGCTCTTTCCCTCATTCAATCGTCTTAAGACCTCGCAGATCGCGTCCTCGAAAGCCGGAGCCCTCCGGGTCTCTTCCTCCAGGCCAATATCTGCAATGGCAAATGCCACTCGCAATAGTTCAGGCAAAGCAGCGGCTCCTCTCCTTAGCGACGCGGAAGAATTGATAAACTCAGTGGAGACTTTCATATTCGACTGTGACGGCGTGATATGGAAGGGCGACAGTTTAATTGCCGGCGTGCCGGAAACTTTGGACATGCTCAGGTCGAAGGGAAAGAGACTTGTGTTCGTGACAAACAATTCAACAAAGTCCCGAAAACAGTATGGGAAGAAATTCGAAACACTTGGTCTTACAGTTGGAGAGGAGGAAATTTTTGCTTCTTCTTTTGCTGCAGCTGCATACTTGGAGTCAATTGATTTCCCTCCAGACAAAAAAGTTTATGTTATTGGGGAGATTGGAATACTGAAGGAACTGGAGCTTGCTGGCTTTAAGTACCTTGGTGGCCCGGAGGATGGTGACAAAAGGATAGAGCTTAAACCCGGGTTCCTTTTGGAGCAAGATAAAGATGTTGGTGCAGTTGTGGTTGGCTTTGATCGATATGTCAACTATTACAAAATTCAGTATGGAACTCTCTGCATACGGGAGAATCCAGGATGTCTTTTCATTGCTACAAACTGTGATGCTGTCACTCATCTCACTGATGCTCAAGAATGGGCAGGTGGTGGTTCTATGGTTGGTGCATTAAGAGGGTCAACTCAGAAAGAACCTATTGTCGTTGGGAAGCCCTCGACATTCATGATGGATTATGTTTCCAAAAAATTTCAGATTAGTAAGTCACAGATATGCATGGTAGGTGATAGATTGGACACTGACATTTTATTTGGTCAAAATGGTGGCTGCAAAACACTTCTTGTCCTTTCAGGTGTCACTACGCTGCCTATGCTTCAAAATCCTGCCAACAGTATTCAGCCAGATTTCTACACAAACAAGGTGTCAGATCTCCTCATCAAGAAGGTTGCAAATGTTTAA___GGATTTCAAAAGATATGATATGTAAGCTGGCTTCAAAGCCTCCCCTCCTCAAGCAGGTTGCAAATGTTTAAAGCTTACAACAATAAGATATGTAAGCTGGCTTTCAGTCTTTCTTTCTTGATATTTGACTGTGTGGCAAAGCTCATTCTCAATACTATTTGAATGTTGCAGACATAAATTGGCTTTCTGGCCATGTCTCTCGTTATTTTTAATCTTAAAATGACAGAAGCTTTTGAATGCCCAATCTTTTTGGGTTACCAATGCAGTTTTGTAAAAGTTATCATAG

Fln Alignment:

Contig1211___MLSKGAMVAATVTSTFCFRCYNRQSLHDITLFPS-FNRLKTSQIASSKAGALRVSSSRPISAMANATRNSSGKAAAPLLSDAEELINSVETFIFDCDGVIWKGDSLIAGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVGEEEIXXXXXXXXXYLESIDFPPDKKVYVIGEIGILKELELAGFKYLGGPEDGDKRIELKPGFLLEQDKDVGAVVVGFDRYVNYYKIQYGTLCIRENPGCLFIATNCDAVTHLTDAQEWAGGGSMVGALRGSTQKEPIVVGKPSTFMMDYVSKKFQISKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTTLPMLQNPANSIQPDFYTNKVSDLLIKKVANV
A9NVC8______________MFSKGAMVAATATSALCIRQHNRPSLHNITLSPSSFNRLNTSQVASLKPGALRVSSSRPISAMANAAGNGSGKAAAPVLSDAEELINSVETFIFDCDGVIWKGDSLIAGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVGEEEIFASSFAAAAYLKSIDFPQDKKVYVIGEVGILKELELAGFKYLGGPDDGDRRIELKPGFLLEQDKEVGAVVVGFDRYVNYYKIQYGTLCIRENPGCLFIATNCDAVTHLTDAQEWAGGGSMVGALRGSTQKDPIVVGKPSTFMMDYVSKKFQISKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTTLPMLQNPSNSIQPDFYTNKVSDLLIKKAANV

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
59			33	66	0.997452
60	66			33	0.997452
61			33	66	0.997452
64			33	66	0.997452
156			66	33	0.997452
170	75			25	0.996473
171		50	25	25	0.995533
172	75		25		0.996473
173		75	25		0.996473
265	66	33			0.997452
301	66		33		0.997452
408		25		75	0.996473
601		80		20	0.995493
685	10	90			0.90298
687	10	90			0.90298
689		90		10	0.90298
760		33		66	1.0
775		60	40		1.0
776	16		83		0.994512
780			83	16	0.994512
810		16		83	0.994512
812		83		16	0.994512
827	88		11		0.923564
828	88		11		0.923564
847		12	87		0.992554
886			88	11	0.923564
887			11	88	0.923564
888	88		11		0.923564
889			11	88	0.923564
899		11		88	0.923564
992	25			75	1.0
997			71	28	1.0
1039		66		33	0.997452
1054	33		66		1.0
1104	75		25		0.996473
1493		90		9	1.0
1504		16		79	1.0
1505	65			34	1.0
1506	34		65		1.0
1537	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain