SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1193

Length: 1393 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1193

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00582, Usp, Universal stress protein family	-	-	1.0e-21	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	e value	Identity
Sma3	response to stress	GO:0006950	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Universal stress protein A	IPR006015	-	-
Sma3	UspA	IPR006016	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G11360.1	Adenine nucleotide alpha hydrolases-like superfamily protein chr1:3822171-3822899 REVERSE LENGTH=242	66%
RefSeq	Arabidopsis thaliana	NP_001154325.1	adenine nucleotide alpha hydrolases-like protein [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002316672.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNA0

Fln msg:

Fln protein: MDVGNRKIAIAVDLSDESAFAVKWAVANYLRPGDNVILLHVRPTSVLYGADWGAIDLSVDTSDEESHQKLEDHFDAFTSSKASDLAQPLVEGNIPFKIHIVKDHDMKERVCLEVERLGVNAVIMGSRGFGASKRNCKSRLGSVSDYCVRHCVCPVVVVRFPEETEVAPSPDQIAVLHEVPEEDEGVLEDQDQLSDDAEEEEQADDVQKEQEKDGAQEEKQVDAEKDEQRTDVVQEEKKKI*

Protein Length: 242

Fln nts: GCCGTTATATTGTCGTATTTATCACGACTCCATTGACAGAAAAGTTGGACTCTGGAAACTTCTCGCGAAGTCTCTACCTATAAAAAAAACACGGTAATCAAATGACCTCGCAAGATTGACAGATGTCGGAAACAGGAAAAGTTCGGTCAGACAGAAATTCACCTTTTGTCTGAAAACTAAAAACTGAGTGCAGCCGAGCTGAAATTCTTATCAATCTGCTTGTATATTTTTCTGTGTATACATCGATTCATTCGTATTGGAGATAATTGCAGAAGAGATTTTTGGTACAAATAGATATAATTTCGAGGTGGGCAGTGGAAATTTGTGGCAACAATTACAACT_-_ATGGACGTTGGAAATAGGAAAATCGCCATCGCAGTTGATCTGAGCGACGAGAGTGCGTTTGCCGTGAAATGGGCGGTGGCGAACTATCTCCGACCGGGCGACAACGTAATTCTCCTGCATGTACGCCCGACTAGTGTCCTCTACGGGGCCGACTGGGGGGCCATCGATCTTTCCGTCGACACCTCCGACGAGGAATCCCACCAGAAGCTCGAAGACCACTTCGATGCCTTCACGTCCTCCAAGGCCTCTGATCTAGCTCAGCCTCTGGTGGAGGGCAACATCCCCTTCAAGATTCACATCGTCAAGGACCACGACATGAAGGAGAGGGTCTGCCTCGAGGTCGAGAGGCTCGGCGTTAATGCTGTCATCATGGGGAGCAGGGGTTTCGGGGCCTCCAAGAGGAATTGCAAGAGCAGGCTCGGGAGTGTCAGCGATTACTGCGTTCGCCATTGCGTTTGCCCCGTTGTTGTTGTCAGGTTTCCAGAGGAGACAGAGGTCGCCCCTTCCCCTGATCAGATCGCCGTTCTTCACGAAGTGCCCGAAGAAGATGAGGGCGTTCTCGAGGATCAGGATCAATTATCAGATGATGCTGAAGAAGAAGAACAGGCAGATGATGTGCAAAAGGAGCAAGAGAAGGATGGTGCTCAGGAGGAGAAACAGGTAGATGCTGAGAAAGATGAACAGCGGACAGATGTTGTTCAAGAAGAGAAGAAAAAAATATGA___ATATATTCTTAGAAAGCAAGTTAAAAGGGTTTTTGATGTTTTGCACCTACTGTGCTGCACGTTGCTTTGTAAGTTGTGTGGGAACTTTATGCCTGTTTGCAATGACTATTCTGATGCATTCTGCAAACCAGATGTGAAGTTCATGATTTACTTTTCATGTACTTCATAAATTGGGTCCTTGTGAATATTTACATTTTATAGTGGATCCATTGTTTCTAAGTCTCTGTGGCTAATAGAGGTGTTATATTTACTTCTTTTGTTTTGAGTATGCTCTGTCAAATTCTATTACAAGTCAATCTTAGCTGCAGTATTTGAATTCTCTGTAATA

Fln Alignment:

Contig1193___MDVGNRKIAIAVDLSDESAFAVKWAVANYLRPGDNVILLHVRPTSVLYGADWGAIDLSVDTSDEESHQKLEDHFDAFTSSKASDLAQPLVEGNIPFKIHIVKDHDMKERVCLEVERLGVNAVIMGSRGFGASKRNCKSRLGSVSDYXXXXXXXXXXXXXFPEETEVAPSPDQIAVLHEVPEEDEGVXXXXXXXXXXXXXXXXXXXXXXXXXXXGAQEEKQVDAEKDEQRTDVVQ
A9NNA0______________MDVGNRKIAIAVDLSDESAFAVKWAVLNYLRPSDNVILLHVRPTSVLYGADWGAIDLSVDTSDEESHQKLEDHFDAFTSSKASDLAQPLVEGNVPFKIHIVKDHDMKERICLEVERLGVNAVIMGSRGFGASKRNCKSRLGSVSDYCVRHCVCPVVVVRFPEEPEAVPSPDHIAVLHEVPEEEEGVPEDQDQSSDGAEEEEQVDDVQKEQRKDGAQEEKQVHVQKDEQRTDVVQ

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
628	11			88	0.923564
1041	18	12	6	56	1.0
1043	77	22			0.999999
1259		48		51	1.0
1260		14		83	1.0
1329	16			83	0.994512
1330		20	80		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
934	945	GAA GAA GAA GAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain