SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1176

Length: 1595 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1176

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	patatin-like protein [Gossypium hirsutum]	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	Patatin-like protein	-	-	3.861e-35	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on ester bonds, Carboxylic ester hydrolases.	EC:3.1.1.-	-	3.741e-11	-

Source	KEGGs	Term	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053	3.741e-11	%
Sma3	Bisphenol degradation	00363	3.741e-11	%
Sma3	Glycerophospholipid metabolism	00564	3.741e-11	%
Sma3	Toluene degradation	00623	3.741e-11	%
Sma3	Aminobenzoate degradation	00627	3.741e-11	%
Sma3	Retinol metabolism	00830	3.741e-11	%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	3.741e-11	%

Source	Gene names
Sma3	AT4g37050; AT4g37060; AT4g37070; At2g26560; At2g26560/T9J22.23; At4g37050; At4g37060; At4g37070; At5g43590; C7A10.290; C7A10.300; C7A10.310; GSVIVT00009696001; GSVIVT00009697001; GSVIVT00009698001; GSVIVT00014769001; GSVIVT00014771001; GSVIVT00014773001;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	phospholipase A2 activity	GO:0004623	Molecular Function	-
Sma3	lipase activity	GO:0016298	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	nutrient reservoir activity	GO:0045735	Molecular Function	-
Sma3	galactolipase activity	GO:0047714	Molecular Function	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-
Sma3	lipid catabolic process	GO:0016042	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Xylose isomerase	IPR001998	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Patatin/Phospholipase A2-related	IPR002641	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Xylose isomerase-like, TIM barrel domain	IPR013022	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G26560.1	PLP2, PLA IIA, PLA2A phospholipase A 2A chr2:11293912-11295708 REVERSE LENGTH=407	53%
RefSeq	Arabidopsis thaliana	NP_180224.1	phospholipase A 2A [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002301194.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NW42

Fln msg: your sequence is longer than subject: 425 - 392

Fln protein: MATTYGNPPPNDGNMITILSIDGGGVRGIIPAAILEFLEEKLQELDGPGVSVADYFDIIAGTSTGGLVTAMLTAPNDKNRPLFPAKDITQFYLDNSASIFPHTTDLLKSAIKYLSGPKYSGNYLHKIMRTYLGATRLHQTLTNVVITAYDIKIQQPAIFTTFKAKQDELEDALLADVCIGTSAAPTYLPAHYFQTKDSKKDSSDNTKSFNLIDGGVAANNPTLLAINQVTQQALIGCPDFLVPTSKACDSSKFLVLSLGTGRHIASYNAIDAAKWGLLKWLSNNSKVPIVDMFQEGSADMVDVYSAVVFRAFSSEKNYLRIQAELSGCTSSTDLSTKKNLEELVKIGKNLLDAPVSRVNIETGVFQQVTGEGTNRDALTRFAKALSDERKLRLSRFKSPSTALLPLEIVSASEEIGGLQHVKAG*

Protein Length: 426

Fln nts: CTATCCATTGGTCTCTACAGTTAAGGAGTCGAAATTAATTTGGAGGTGAAGGCTTAATTTGAGTATAGAGC_-_ATGGCTACTACTTACGGGAATCCGCCACCAAACGATGGCAATATGATTACTATTCTCAGTATTGACGGAGGAGGGGTTCGTGGGATTATCCCAGCAGCTATCCTCGAATTCCTGGAGGAAAAACTCCAGGAATTGGACGGCCCAGGCGTGAGTGTAGCTGATTATTTCGACATAATTGCTGGAACCAGCACGGGAGGATTGGTCACTGCCATGTTAACCGCTCCAAATGACAAGAATCGTCCATTGTTTCCTGCAAAGGATATTACCCAGTTTTATTTGGATAATTCTGCTAGTATTTTTCCACATACAACAGATTTGTTGAAATCCGCAATTAAGTATCTGAGTGGCCCCAAATATTCTGGGAATTACTTGCACAAAATCATGAGAACCTATTTGGGGGCTACACGATTACACCAAACCCTAACGAACGTCGTGATTACTGCATACGACATCAAGATACAACAACCTGCAATCTTCACCACTTTTAAGGCCAAACAGGACGAGTTAGAAGATGCACTTTTAGCCGATGTCTGCATTGGAACCTCAGCAGCTCCAACATATCTTCCTGCTCATTACTTCCAAACAAAAGATTCCAAAAAAGATTCCTCGGACAATACCAAAAGCTTTAACCTCATAGACGGGGGAGTTGCAGCGAACAACCCAACGTTACTTGCAATAAACCAAGTGACTCAGCAAGCTCTCATAGGCTGTCCAGATTTCTTAGTGCCAACGTCTAAAGCTTGCGATAGTAGCAAATTTCTGGTGCTTTCACTTGGAACCGGACGGCATATAGCTAGTTACAACGCCATTGACGCTGCAAAATGGGGACTGCTTAAATGGTTATCCAACAACAGCAAAGTGCCGATAGTTGACATGTTTCAGGAAGGGAGTGCAGATATGGTGGACGTTTACTCAGCGGTCGTGTTCCGAGCCTTTAGTTCGGAGAAGAACTATTTAAGAATCCAGGCTGAATTGTCAGGATGTACGAGCTCAACGGATCTGTCAACGAAGAAGAATCTGGAAGAACTGGTGAAGATAGGGAAAAATCTTCTGGACGCTCCTGTTTCGAGAGTGAATATAGAGACGGGTGTGTTTCAACAAGTGACAGGCGAAGGCACCAACCGCGATGCATTGACTAGATTTGCGAAGGCTCTCTCCGATGAAAGGAAGCTACGATTATCGCGCTTCAAATCGCCTTCTACAGCTTTACTTCCACTAGAAATAGTGTCTGCATCTGAAGAAATTGGAGGCCTTCAGCATGTTAAAGCTGGTTGA___TTTCGATAGTTCAAATAGAAATCCCGAACTGATGTATTCCTTCATATACCCATCTGTTTTATAATTTTGTGGTGGGGGGGGTTTCAACTCTTTTTTTCCCGGGTAAGAAAAAACACAGTTTTTTCGACTTCGTAAAGATGTTTTTCCAAATGGCGTATTTAATATATTGTTTTTCCAAATGGTGTATAATTTTGTGGTGGGGGGCGAGGGGGTTTCAACTCTTTTTTTCCCGGGTAAGAAAAAACACAG

Fln Alignment:

Contig1176___MATTYGNPPPNDGNMITILSIDGGGVRGIIPAAILEFLEEKLQELDGPGVSVADYFDIIAGTSTGGLVTAMLTAPNDKNRPLFPAKDITQFYLDNSASIFPHTTDLLKSAIKYLSGPKYSGNYLHKIMRTYLGATRLHQTLTNVVITAYDIKIQQPAIFTTFKAKQDELEDALLADVCIGTSAAPTYLPAHYFQTXXXXXXXXXNTKSFNLIDGGVAANNPTLLAINQVTQQALIGCPDFLVPTSKACDSSKFLVLSLGTGRHIASYNAIDAAKWGLLKWLSNNSKVPIVDMFQEGSADMVDVYSAVVFRAFSSEKNYLRIQAELSGCTSSTDLSTKKNLEELVKIGKNLLDAPVSRVNIETGVFQQVTGEGTNRDALTRFAKALSDERKLRLS
A9NW42______________MDITSRNQSVTDGQFITVLSIDGGGVRGIIPAAILEFLEETLQKLDGPDVSIADYFDVIAGTSTGGLVTAMLAAPNENNRPLFAAKDITKFYLDNCPHIFPPTTGFLQSVFKYLNGPKYSGDYLHKILKKYLGDKRLHQTLTNVVITTYDIQIQQPAIFSTFTAKKDKLTDAFLADVCIGSSAAPTYLPAYYFQT----KDSSGNTRDFNLVDGGIAANNPTLLAINQVTKQTLVDCPGFAVPTSKASDTTKFLVLSLGTGQKMETYNATDAAKWGLIGWLSNGGKTPIIDMFSQSSADMVDIHASVVFQAFKSEKNYLRIQVELSGDTSSTDLSTKKNLEDLVELGRKLLDDSVSRVNIETGLFEKVTGEGSNRDALTRFAKALSDERKLRLS

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
926	66		33		1.0
928		66		33	1.0
941	33		66		1.0
942		33		66	1.0
956		33	66		1.0
960		33	66		1.0
986			33	66	1.0
989	33		66		1.0
1011	28		71		1.0
1015		28	71		1.0
1041		66		33	1.0
1055			50	50	1.0
1056	33		66		1.0
1060	33		66		1.0
1063		83		16	0.994512
1069	33		66		1.0
1075		33	66		1.0
1081	20		40	40	1.0
1083	80		20		0.995493
1096	80		20		0.995493
1099	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain