SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1175

Length: 2583 nt

UniGene Fasta

>sp_v3.0_unigene1175
CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGACCATTCGGCGGATTTCGACAAAACCACCTGTTACGCGGTTTCGCCAGAGGTGTTTCTACCTGTTCTGCTGCGCAAGGGTTGGAGAGCAGGCATGTATTCTTTCATTCACAATGGATTACGGTCTTGATGACGAAACACAGGGCACTTGGAAGCTTTAAATGCTTGAGATCCAGGCGAAAATGGCCTCAGGCAACCCCAAACCAGCGGAATTACGGTCCTTTTGAGCCTGCCTACCCTCGAATCGGTCGATTCCGTGCTGTATCGGTACATTAACAACCTGCCAGCGCGGAGATTCCATCTCGCACATTGAAGCTTTAATCTCGTGGCCCTTTTTGCAAATTATGCTGTTTCTGAAATTAGGGGCAACGGAAGCTTAATTTTGAAGGCTTTGAAGCGTCCAGATTGTTCTTGATGCCTCCGATCAAGAATATCATCCAGGACATGAAGGGCGGCATCGGAAGTATTTCCAAGAGGAGCTTCGATGTGAAGCTCTCCTACAACCGCAGATCGCGGTCACACTCGCACGGCGTCGCGGTGACCTCTGGTGATGAGAATCACTGCAAAACAGCCGCCGATATTTTGCATGAGAGCTGCTGGGCGAATTTGCCCTATGAGCTGCTCAGAGATATTATTGAGAGAATTGAGAGCAGCGAGATCACCTGGCCTGCACGGAGGAACGTTGTGGTTTGTGCTGGCGTGTGCAGAACGTGGAGGGAAATTATCAAGGAGATTGTGAAACCGCCGCTTCTGTCCGGAGTGCTCACATTTCCTGTGTCCTTGAAGCAGCCTGGACCGAAAGATTCTGCTGTGCAATGTTTTATCAAGCAAGATAGGACTGCATCTGCATATTATTTGTACTTGGGTTTGGCTTCAACGATTTGTGAAAATGGGAAATTTCTTCTTGCTGCTCGAAAATTCAGAAAGGCTACAAGCACTGATTATATCATCTCGTTTGACGGAGAGGATATGTCAAGGGGAAGCAATACCTACGTAGGAAAGCTGAGATCAAATTTTCTTGGAACCAAGTTCACAATATATGATAGTCAACCTTCTCATAGTGGTGGTGTAGCTACAAGTCATGCAGGGCGACGGGTTGGTTCAAAGCAAGTTTCTCCAAGAGTTCCAGCTAGTAGTTATAATGTTGCTCACATTGCCTATGAATTGAATGTTTTGGGTACAAGAGGTCCAAGACGAATGCAATGTACCATGCATTCTATACCAGCGTCAGTCGTAGAAGCAGGATTGAACACTTCAACTTTTGAAATTCCATCAAGTACTCTAGTGGAGCCTCTAGCATCTTTCCGTTCCTCTCGCTCCAAGTCAGTCATTAGTGAAAGTAATGCTTTTTCGGGGCCTCTCAATAGTGGGAACTTGAAAGATGATCCATTGATCTTGAAGAACAAAGCCCCAAGGTGGCATGAGCAGCTTCAATGCTGGTGTTTGAATTTTCAAGGACGGGTGACAGTTGCATCTGTAAAGAACTTTCAACTTGTTGCAGCTACTGAGCCTGCACAATCTGTCTCTCAGAGTGATCAGGTTAAGGTTATCCTCCAGTTTGGAAAGGTTGGAAAGGATTTTTTCACTATGGATTACCGATATCCCCTGTCAGCTTTTCAGGCATTTGCCATCTGTCTTAGCAGTTTCGACACTAAGTTGGCTTGTGAATAGATGGACTATGATGCTGAGGGTTGAGCGTATGTGGTGACCAATATGCCTAGAAAGAATTAAAGGGTCTCAAATGCTTAGTAGTGCATACTGGTTTGTTTTATAATAATCCTATTGCATTATATTTACTTGTTTATTCTTGTTCTCATGATGTCTAACATGCACAAGATTGGTAACATAGAAATTAAAATTGTAGCAGAGGATCAGCACTGCAATTAACTGCTGGTATAACACGGGTTGATGATGTATAAGATCAGTCAAGTCATGAGAATATTTTGTATTTAACTGAACACGTCTTTTGCTTAGACAGAGATGCAGGGGTATTGCTTAGAGAAGCTTTCATAATCCTCTGATATGATGAGTAGTTTTAAGAATAATAGGTCATAGGAGGCTTTCAGAAAGCCTGTGGACTAGAGTCTAGTGTATGTCTTTTGTAGTTTGGACTAAATGTTTCTGCTCTAATGATGCGGAGTTCAGGCCTAGGGAGATGTATGTAAGGCTTCCACTGTGTAAAGCCTTTTATATACTTGATGTTGCAATTAATAACCGGAACCAAGTATATTGGAGGATTTTGGGACTGTATATCAAATTATGAATTTATTTGATCATTTATCCTGTTGATATCATGTCATTCTGATGAGAGACATATTTAGCCTCTTCAGTATGGACTTTCCATGGAAGTTATGCTGTCACACAATAACCTAAATATATGTTTCCGAAGAGAGATTCTTGTTCTGGTAAAACAATAGGCATGTCACATCTGAAGTGCTCAATTGGAGTATTTGTCATCAGCATTATGTATGTGTATAGATGCTGGCATCTCCAAGTGCATAGGATGTTCTGTATTCATGCCATGCTACATGCCTTCTTTGTGGCGGGG

Ace file of the UniGene sp_v3.0_unigene1175

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubby-like protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SPK2_PHYPA	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Tubby, C-terminal	IPR000007	-	-
Sma3	Tubby, C-terminal, conserved site	IPR018066	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G47900.3	TLP3 tubby like protein 3 chr2:19611196-19612766 REVERSE LENGTH=407	58%
RefSeq	Arabidopsis thaliana	NP_001189775.1	Tubby-like F-box protein 3 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002306697.1	f-box family protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LK95

Fln msg:

Fln protein: MPPIKNIIQDMKGGIGSISKRSFDVKLSYNRRSRSHSHGVAVTSGDENHCKTAADILHESCWANLPYELLRDIIERIESSEITWPARRNVVVCAGVCRTWREIIKEIVKPPLLSGVLTFPVSLKQPGPKDSAVQCFIKQDRTASAYYLYLGLASTICENGKFLLAARKFRKATSTDYIISFDGEDMSRGSNTYVGKLRSNFLGTKFTIYDSQPSHSGGVATSHAGRRVGSKQVSPRVPASSYNVAHIAYELNVLGTRGPRRMQCTMHSIPASVVEAGLNTSTFEIPSSTLVEPLASFRSSRSKSVISESNAFSGPLNSGNLKDDPLILKNKAPRWHEQLQCWCLNFQGRVTVASVKNFQLVAATEPAQSVSQSDQVKVILQFGKVGKDFFTMDYRYPLSAFQAFAICLSSFDTKLACE*

Protein Length: 420

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGACCATTCGGCGGATTTCGACAAAACCACCTGTTACGCGGTTTCGCCAGAGGTGTTTCTACCTGTTCTGCTGCGCAAGGGTTGGAGAGCAGGCATGTATTCTTTCATTCACAATGGATTACGGTCTTGATGACGAAACACAGGGCACTTGGAAGCTTTAAATGCTTGAGATCCAGGCGAAAATGGCCTCAGGCAACCCCAAACCAGCGGAATTACGGTCCTTTTGAGCCTGCCTACCCTCGAATCGGTCGATTCCGTGCTGTATCGGTACATTAACAACCTGCCAGCGCGGAGATTCCATCTCGCACATTGAAGCTTTAATCTCGTGGCCCTTTTTGCAAATTATGCTGTTTCTGAAATTAGGGGCAACGGAAGCTTAATTTTGAAGGCTTTGAAGCGTCCAGATTGTTCTTG_-_ATGCCTCCGATCAAGAATATCATCCAGGACATGAAGGGCGGCATCGGAAGTATTTCCAAGAGGAGCTTCGATGTGAAGCTCTCCTACAACCGCAGATCGCGGTCACACTCGCACGGCGTCGCGGTGACCTCTGGTGATGAGAATCACTGCAAAACAGCCGCCGATATTTTGCATGAGAGCTGCTGGGCGAATTTGCCCTATGAGCTGCTCAGAGATATTATTGAGAGAATTGAGAGCAGCGAGATCACCTGGCCTGCACGGAGGAACGTTGTGGTTTGTGCTGGCGTGTGCAGAACGTGGAGGGAAATTATCAAGGAGATTGTGAAACCGCCGCTTCTGTCCGGAGTGCTCACATTTCCTGTGTCCTTGAAGCAGCCTGGACCGAAAGATTCTGCTGTGCAATGTTTTATCAAGCAAGATAGGACTGCATCTGCATATTATTTGTACTTGGGTTTGGCTTCAACGATTTGTGAAAATGGGAAATTTCTTCTTGCTGCTCGAAAATTCAGAAAGGCTACAAGCACTGATTATATCATCTCGTTTGACGGAGAGGATATGTCAAGGGGAAGCAATACCTACGTAGGAAAGCTGAGATCAAATTTTCTTGGAACCAAGTTCACAATATATGATAGTCAACCTTCTCATAGTGGTGGTGTAGCTACAAGTCATGCAGGGCGACGGGTTGGTTCAAAGCAAGTTTCTCCAAGAGTTCCAGCTAGTAGTTATAATGTTGCTCACATTGCCTATGAATTGAATGTTTTGGGTACAAGAGGTCCAAGACGAATGCAATGTACCATGCATTCTATACCAGCGTCAGTCGTAGAAGCAGGATTGAACACTTCAACTTTTGAAATTCCATCAAGTACTCTAGTGGAGCCTCTAGCATCTTTCCGTTCCTCTCGCTCCAAGTCAGTCATTAGTGAAAGTAATGCTTTTTCGGGGCCTCTCAATAGTGGGAACTTGAAAGATGATCCATTGATCTTGAAGAACAAAGCCCCAAGGTGGCATGAGCAGCTTCAATGCTGGTGTTTGAATTTTCAAGGACGGGTGACAGTTGCATCTGTAAAGAACTTTCAACTTGTTGCAGCTACTGAGCCTGCACAATCTGTCTCTCAGAGTGATCAGGTTAAGGTTATCCTCCAGTTTGGAAAGGTTGGAAAGGATTTTTTCACTATGGATTACCGATATCCCCTGTCAGCTTTTCAGGCATTTGCCATCTGTCTTAGCAGTTTCGACACTAAGTTGGCTTGTGAATAG___ATGGACTATGATGCTGAGGGTTGAGCGTATGTGGTGACCAATATGCCTAGAAAGAATTAAAGGGTCTCAAATGCTTAGTAGTGCATACTGGTTTGTTTTATAATAATCCTATTGCATTATATTTACTTGTTTATTCTTGTTCTCATGATGTCTAACATGCACAAGATTGGTAACATAGAAATTAAAATTGTAGCAGAGGATCAGCACTGCAATTAACTGCTGGTATAACACGGGTTGATGATGTATAAGATCAGTCAAGTCATGAGAATATTTTGTATTTAACTGAACACGTCTTTTGCTTAGACAGAGATGCAGGGGTATTGCTTAGAGAAGCTTTCATAATCCTCTGATATGATGAGTAGTTTTAAGAATAATAGGTCATAGGAGGCTTTCAGAAAGCCTGTGGACTAGAGTCTAGTGTATGTCTTTTGTAGTTTGGACTAAATGTTTCTGCTCTAATGATGCGGAGTTCAGGCCTAGGGAGATGTATGTAAGGCTTCCACTGTGTAAAGCCTTTTATATACTTGATGTTGCAATTAATAACCGGAACCAAGTATATTGGAGGATTTTGGGACTGTATATCAAATTATGAATTTATTTGATCATTTATCCTGTTGATATCATGTCATTCTGATGAGAGACATATTTAGCCTCTTCAGTATGGACTTTCCATGGAAGTTATGCTGTCACACAATAACCTAAATATATGTTTCCGAAGAGAGATTCTTGTTCTGGTAAAACAATAGGCATGTCACATCTGAAGTGCTCAATTGGAGTATTTGTCATCAGCATTATGTATGTGTATAGATGCTGGCATCTCCAAGTGCATAGGATGTTCTGTATTCATGCCATGCTACATGCCTTCTTTGTGGCGGGG

Fln Alignment:

Contig1175___MPPIKNIIQDMKGGIGSISKRSFDVKLSYNRRSRSHSHGVAVTSGDENHCKTAADILHESCWANLPYELLRDXXXXXXXXXXTWPARRNVVVCAGVCRTWREIIKEIVKPPLLSGVLTFPVSLKQPGPKDSAVQCFIKQDRTASAYYLYLGLASTICENGKFLLAARKFRKATSTDYIISFDGEDMSRGSNTYVGKLRSNFLGTKFTIYDSQPSHSGGVATSHAGRRVGSKQVSPRVPASSYNVAHIAYELNVLGTRGPRRMQCTMHSIPASVVEAGLNTSTFEIPSSTLVEPLAXXXXXXXXXXXXXXNAFSGPLNSGNLKDDPLILKNKAPRWHEQLQCWCLNFQGRVTVASVKNFQLVAATEPAQSVSQSDQVKVILQFGKVGKDFFTMDYRYPLSAFQAFAICLSSFDTKLACE
B8LK95______________MPPIKNIIQDMKGGIGSISKRSFDVKLSYNRRSRSHSQGVAAASGDENHCKTAADILHESCWANLPYELLRDIIERIEGSEITWPARRNVVACASVCRTWREIIKEIVKPPLLSGVLTFPVSLKQPGPKDLPVQCFIKQDRTASAYYLYLGLTSTICENGKFLLAARKFRKATSTDYIISFNAEDMSRGSNTYVGKLRSNFLGTKFTIYDSYPPHSGGVATSHAGRRVGSKQVSPRVPASSYNVAHIAYELNVLGTRGPRRMQCTMHSIPASAIEAGMSSSTVEIPSSTLVEPLASFRSSRSKSVISESSASSGPLNSGNLKDDPLILKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAATEPAQSVSQSDQDKVILQFGKVGKDVFTMDYRYPLSAFQAFAICLSSFDTKLACE

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
160		11		88	0.923564
225	12	87			0.992554
226	75	25			1.0
406	20		80		0.995493
424			83	16	0.994512
425	28	71			1.0
427			28	71	1.0
428			28	71	1.0
430	85			14	0.993533
743	90		10		0.90298
972	90		10		0.90298
981	55		44		1.0
989	10		90		0.90298
991			10	90	0.90298
992			12	87	0.992554
995		62		37	1.0
1268	16	83			0.999991
1380	12		87		0.992554
1382	12			87	0.992554
1586	50	50			1.0
1600	75		25		0.996473
1685		87		12	0.992554
1686	87		12		0.992554
1687		87	12		0.992554
1688			12	87	0.992554
1747	88		11		0.923564
1780		88		11	0.923564
1976	62	37			1.0
2197		33	66		1.0
2310	23	7			1.0
2325	50		50		1.0
2395		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain