SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1170

Length: 1451 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1170

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to NFU4 (NFU domain protein 4) n=1 Tax=Vitis vinifera RepID=UPI00019858D3	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	Gene names
Sma3	OsI_18522;

Source	GOs	Term	Type	Identity
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-
Sma3	iron-sulfur cluster assembly	GO:0016226	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	HIRA-interacting protein 5	IPR017065	-	-
Sma3	NIF system FeS cluster assembly, NifU-like scaffold, N-terminal	IPR014824	-	-
Sma3	NIF system FeS cluster assembly, NifU, C-terminal	IPR001075	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G20970.1	NFU4, ATNFU2 NFU domain protein 4 chr3:7348277-7350069 FORWARD LENGTH=283	74%
RefSeq	Arabidopsis thaliana	NP_566673.1	NifU-like protein 4 [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002315442.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNH0

Fln msg: your sequence is longer than subject: 277 - 181

Fln protein: MLRSLRKFGHNIPRINRNRRSIQSRFSVGCRHLFTASSTPSTNDGNGRVNSLGPSSYRNPWNSMPGQYRSMFIQTQSTPNPLSLMFYPGKPVMEVGSADFPNARVAMGSPLAKALYGIDGVARVFFGSDFITVTKSEEVSWDILKPEIFAAIMDFYSSGKPLFLDSKSGAPTDTTINEDDDETVAMIKELLETRIRPSVQDDGGDIEYRGFDVETGVVKLKMQGACSGCPSSSLTLKSGIENMLMHYVPEVKGVEEELDSEEDDSAELTNNMEQSV*

Protein Length: 278

Fln nts: CAACAGGCTAAAAGGAAAGCCACCGATGACCATACCGCAACACTCAGTGTCATCCGCGTCTCCACATCGCTCTCCTCGACAAATAAATCAACTCATTTAAAAATGAAAAGAACAATGTCAATTGGTGAAATCTTCGAATTTGATTCTACCTGCCCCAATTTGTTTGGGTGATGGACAGGCATAAGGCGGCGTGACATTGTAATTACATTGCATTAGGACAGCTTATTGTGCTATTATTTTCAATCTAAGTAAATTCTTCGAACAACTTCTTTACTTCCTCAGCGTTGCATCATTCCGACCCCTCAACTCAACTCTGGTGAATTGCTGTTGGAGGTTCCTGTAACTGCAACTCTACTCAGGTTTTTTTCGAA_-_ATGTTGAGGTCTCTTAGGAAATTTGGTCACAATATCCCTCGAATAAACAGAAACAGAAGAAGTATTCAGAGCAGATTTTCTGTTGGCTGCCGCCACTTGTTTACTGCTTCTTCAACACCTTCAACAAATGATGGGAACGGCCGTGTAAATTCACTGGGGCCATCCTCTTACAGAAATCCGTGGAACAGCATGCCTGGTCAATATAGGAGCATGTTTATACAGACCCAGTCAACTCCTAATCCATTATCTTTGATGTTTTATCCTGGAAAGCCAGTCATGGAAGTTGGCAGTGCAGATTTTCCAAATGCACGTGTTGCAATGGGCTCCCCTTTGGCAAAAGCACTCTATGGTATTGATGGTGTTGCACGTGTTTTTTTTGGATCTGATTTCATAACAGTAACAAAATCAGAGGAGGTCTCATGGGATATTTTGAAGCCTGAAATCTTTGCAGCAATCATGGATTTTTATTCATCAGGGAAACCACTGTTTTTGGACTCTAAATCAGGAGCTCCTACAGACACCACCATTAATGAGGATGATGATGAGACGGTTGCCATGATAAAAGAATTGTTAGAGACACGCATACGACCGTCTGTTCAGGATGATGGTGGTGATATTGAATATCGTGGTTTTGATGTGGAAACTGGAGTAGTCAAATTAAAAATGCAAGGGGCTTGTAGTGGCTGCCCTAGCTCCTCACTCACTTTGAAGTCTGGCATTGAGAACATGCTGATGCATTATGTACCTGAGGTTAAAGGAGTAGAAGAAGAATTGGATTCTGAAGAAGATGACTCTGCAGAATTGACCAACAATATGGAACAATCTGTATGA___TTACATGTTGTATCAAGTATGATGGATATTTGAGTAATTGTATCTAATTGCACAAGGGCAACATTCTTTAGCCCAGACTCTGAATATGTGGGTTTTCCTTCAACATAGTTGCCCTATAATTAAATCCGAAATTGTCTTGCTTTTTTTATCTGAGCAGCAAGGGAATAATCCAATGTGTCCACTTTCAATAAAAATTCTATATTCCAGTGTTGTTAATTTACGTAAATTTTTATTTTTTTGGGGTCCAGT

Fln Alignment:

Contig1170___MEVGSADFPNARVAMGSPLAKALYGIDGVARVFFGSDFITVTKSEEVSWDILKPEIFAAIMDFYSSGKPLFLDSKSGAPXXXXXXXXXXXXVAMIKELLETRIRPSVQDDGGDIEYRGFDVETGVVKLKMQGACSGCPSSSLTLKSGIENMLMHYVPEVKGVXXXXXXXXXXXXXXTNNME
A9NNH0______________MEVGSADFPNARVAMGSPLAKSLYGIDGVARIFFGSDFITVTKSEEVSWDILKPEIFAAIMDFYSSGQPLFLDSKSGAPTDTAINEDDDETVAMIKELLETRIRPAVQDDGGDIEYCGFDPETGVVKLKMQGACSGCPSSSLTLKSGIENMLMHYVPEVKGVEQELDPEEDETAELANNME

SNPs (tot: 4)

Position	A %	C %	T %	Probability
1124		6	93	0.999153
1367	57		42	1.0
1420	25		75	0.996473
1423	33		33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain