SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1168

Length: 1919 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1168

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q3E6Q1.1\|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290 gb\|AEE28713.1\| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	-	-	0.0	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Sma3	Tetratricopeptide-like helical	-	-	7.882e-12	-

Source	Gene names
Sma3	At1g08070; At1g11290; At1g68930; At2g03880; At2g29760; At3g08820; At3g11460; At3g12770; At3g23330; At3g24000; At3g26782; At3g46790; At3g49140; At3g57430; At3g63370; At4g02750; At4g13650; At4g18750; At4g30700; At4g33170; At4g33990; At5g16860; B1032F05.19;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	nuclease activity	GO:0004518	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	deaminase activity	GO:0019239	Molecular Function	-
Sma3	nucleotide-excision repair	GO:0006289	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	purine ribonucleoside monophosphate biosynthetic process	GO:0009168	Biological Process	-
Sma3	phloem or xylem histogenesis	GO:0010087	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	-
Sma3	mRNA modification	GO:0016556	Biological Process	-
Sma3	chloroplast RNA processing	GO:0031425	Biological Process	-
Sma3	polycistronic mRNA processing	GO:0031426	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	UVR domain	IPR001943	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR011523	-	-
Sma3	Hemimethylated DNA-binding domain	IPR011722	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002303960.1	predicted protein [Populus trichocarpa]	0.0	51%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: your sequence is shorter than subject: 587 - 795

Fln protein: YRMQQVGVQPNNFTFPFLLKACASLSALQEGKKIHKDIIRGGFESDVFVGSALIHMYTKCWSIDIARQVFDKMCTRDVVSWNAMVAGYSQNGHPETVLGLFDDMRREDVAPDRFTMVSVIQACTHLGALQRGMWIQDYVTRSGFESDVFVGTALIDMYAKCRSIDIAFAVFDKMLKRDVVSWNAMITGYVVNGNANEALMLLRRMQLAGIKPDSVTMVNVLPACAQLAAVQQGKWIHGYIIRTGFVSDIVVATALMDMYAKCGKIELARQFFDEMSKRDIVSWNSMIAGYGMHGYGEHALELFSQMQLTALKPNHITFVGILSACSHAGLVDKGWQYFHCMDLDYSIMPRVEHYACMVDLLGRAGCLYEAEDFIKNMPVEPSASVWGALLGACKIHCNIQLGEHAAECLLELEPENVGCYVLMSNIYAMAGRWDGVEKVRKIMKDRGLKKIPGCSYVELNKKVYCFLTGDRSHAQTDEIYEMLEALAGKMKEAGYAPNTTFTLHNVEDEVKEHLLCSHSEKLAIAFALINTNPGSTIQITKNLRVCDDCHNATKFISRIVKREIIVRDANRFHHFKDGLCSCGDYW*

Protein Length: 588

Fln nts: CTACCGAATGCAGCAGGTGGGCGTACAACCAAACAATTTCACGTTCCCCTTTTTGCTCAAAGCGTGTGCTAGTCTTTCAGCTCTGCAAGAGGGCAAGAAGATTCATAAAGACATTATCAGAGGTGGTTTTGAGTCGGATGTTTTCGTGGGATCGGCACTTATACATATGTATACTAAATGTTGGAGTATTGACATTGCACGCCAAGTGTTTGACAAAATGTGTACTAGAGATGTTGTCTCATGGAATGCCATGGTTGCTGGTTATTCTCAGAATGGACATCCTGAAACAGTTCTGGGACTGTTTGATGACATGCGAAGAGAAGATGTAGCGCCTGATCGATTTACGATGGTGAGTGTCATCCAGGCTTGCACCCATTTAGGAGCTCTGCAACGAGGCATGTGGATCCAGGATTATGTAACTAGAAGTGGGTTTGAATCAGATGTTTTTGTTGGAACTGCGCTTATCGATATGTATGCAAAGTGTAGGAGTATAGACATTGCGTTTGCTGTGTTTGACAAAATGTTAAAAAGGGATGTGGTTTCTTGGAATGCCATGATTACTGGATATGTGGTCAATGGGAATGCAAATGAAGCTTTGATGTTGCTTAGACGAATGCAACTGGCAGGCATTAAACCTGACTCTGTCACCATGGTGAATGTGCTCCCAGCATGTGCCCAGTTAGCAGCTGTGCAACAGGGTAAGTGGATCCATGGTTATATTATTAGAACAGGATTTGTGTCTGATATTGTAGTGGCGACTGCTCTCATGGATATGTATGCAAAATGTGGAAAAATAGAACTGGCACGCCAATTTTTTGATGAGATGTCTAAACGAGACATAGTTTCATGGAATTCAATGATTGCTGGTTATGGCATGCATGGTTATGGTGAGCATGCCCTGGAACTTTTTTCCCAAATGCAACTGACAGCCCTGAAGCCTAACCATATTACGTTTGTTGGTATTTTATCTGCATGCAGTCATGCAGGCCTTGTAGATAAGGGTTGGCAATACTTTCATTGTATGGATCTGGATTACTCGATCATGCCTAGAGTAGAGCATTATGCATGCATGGTTGACCTTCTTGGTCGTGCTGGATGTCTGTATGAGGCAGAGGACTTCATCAAAAACATGCCAGTAGAACCCAGTGCTAGTGTGTGGGGAGCCTTGCTTGGTGCTTGCAAAATTCACTGCAATATTCAATTAGGAGAACATGCAGCCGAATGCCTCCTTGAATTAGAGCCTGAAAATGTTGGATGTTATGTATTGATGTCAAACATCTATGCCATGGCTGGGAGGTGGGATGGTGTGGAAAAAGTGAGAAAAATAATGAAAGACCGAGGATTGAAAAAGATACCAGGATGCAGTTATGTTGAATTAAATAAAAAGGTATATTGTTTCCTTACAGGAGACAGATCACATGCTCAGACAGATGAAATCTATGAAATGTTGGAGGCTTTGGCTGGGAAGATGAAGGAGGCAGGATATGCCCCTAACACAACTTTTACACTGCACAATGTTGAGGACGAAGTGAAGGAACACCTGTTGTGCAGTCACAGTGAAAAGTTAGCCATAGCTTTTGCTCTTATCAATACAAACCCTGGAAGCACTATACAGATAACAAAAAACCTCCGTGTTTGTGATGACTGTCACAATGCAACGAAGTTCATCTCGAGGATTGTGAAGCGAGAAATAATTGTAAGGGATGCAAACCGGTTTCATCATTTTAAGGATGGATTGTGTTCTTGTGGGGACTACTGGTAA___TGGCTATCTATATGAGCTTTAGTCAATGGACTTGTATGATTTCAAAGTTTTAACATTTGTTTCCTACAGTTTCCAGTAAGTGCTAGGTGTTGCTTTTTCATTTCTAGCCCAATGCTATGTACATTATGTAATTTGTGGTCAATAAAGAGACGGAGTA

Fln Alignment:

Contig1168___YRMQQVGVQPNNFTFPFLLKACASLSALQEGKKIHKDIIRGGFESDVFVGSALIHMYTKCWSIDIARQVFDKMCTRDVVSWNAMVAGYSQNGHPETVLGLFDDMRREDVAPDRFTMVSVIQACTHLGALQRGMWIQDYVTRSGFESDVFVGTALIDMYAKCRSIDIAFAVFDKMLKRDVVSWNAMITGYVVNGNANEALMLLRRMQLAGIKPDSVTMVNVLPACAQLAAVQQGKWIHGYIIRTGFVSDIVVATALMDMYAKCGKIELARQFFDEMSKRDIVSWNSMIAGYGMHGYGEHALELFSQMQLTALKPNHITFVGILSACSHAGLVDKGWQYFHCMDLDYSIMPRVEHYACMVDLLGRAGCLYEAEDFIKNMPVEPSASVWGALLGACKIH
B8LQA8______________YQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQ-IHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVS-WTTMILAYGIH

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
589	66		33		0.997452
811		80		20	0.995493
814	80		20		0.995493
816			20	80	0.995493
818			20	80	0.995493
966	20			80	0.995493
1016	25			50	0.995533
1146		75	25		0.996473
1283	25			75	0.996473
1284	75			25	0.996473
1285			25	75	0.996473
1287		75		25	0.996473
1288		75		25	0.996473
1289	75		25		0.996473
1291		25	75		0.996473
1292	25		75		0.996473
1296	25		75		0.996473
1320	20		80		0.995493
1324			75	25	0.996473
1373		25		75	0.996473
1374	25		75		0.996473
1466		16		83	0.994512
1540	85		14		0.993533
1560	85		14		0.993533
1664		80		20	0.995493
1665			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain