SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1153

Length: 2623 nt

UniGene Fasta

>sp_v3.0_unigene1153
GATGCAGAGCGAGCAAATTCGAACGGAGAAGATACTTATCTAGTTACAGGAGGGTAAGGCCGCCGAGGTGCAGGGTGAGCAAATTCCAGGGGAGAGAAAAATGATGGATAGCAAATAAATTTTGACTGTGAATGACAACTAACTAGTGACTTCCATGGATGCATCTAAGAAAATAATTTCAAGGACATTGAGTCTGTCTGGAATATAATGTACTGTCGAATCTCTGGTCCGTAGCAAATTTTAAGAAATGATAAATAGCTAAGACCTATGTCATTCTGGCAGAGCAAGATCTTTGCAGTTGTTGTGGCGAATATGCCGCTGATGTGCAGAGAAAACAAATTCGAAGGGGGAGAAAAATAATGGATAACAATTCTTTTTGAACTGTGCAGGACAGCTAAGTAGTGAATTCCATGGACGTATTGAAGAAAATAACTTAAGGACATTGTGAAGTCTACCTGGAATATAATGAACTGTCCTATTATCATTCTGGCAGCTAGATTTTTGCAGTTCTCTGTGGTGAATGAGTGAAGTCAGGATGGGCCGAGCAACATCTTCTTCCTCGGTTGAAATGCAATCAGTTCTGCAGTTGGCAGTGGTTTCAAGGATTCTGGTGCTGAGTTTGATTGTGATATGGAGATGCATAGCTACTTCATATGACACATCGTCCTCTTTGAACCCACCTTGTCTGTCAACAACAACAAAATCAATCATTGATCCCCACTCTCCATTGATTTTGGAGAACGAGAGACAGATATGTGGTGTTTGGAGCCAGTTAGGCAAGGCCATAGAGGGAAGTGTTGTGTGGGATTCAGTATATTATGTGAGGATTGCGCAGTGTGGGTACGAATATGAACAATCCTATGCTTTTCTCCCATTGCTTCCTCTCTGCATGCGCTTTTTATCAAAAACAGTTTTTGCTCCATTGGTTCCTTTGATGGGATACAGGGCTGTATTGACTTTGTCTGGGTATATTCTCAACAACATTGCCTTTGTGTTTGCAGCCCTCTTCCTATACAAGCTAACATTTATGTTTTCAAAGATTCCAAGGCGGCCTTGCGTGCAACATCTCTTTTCTGTTTCAACCCAGCTTCAATATTCTATTCTTCAATATATTCAGAAAGTTTATTCTCTCTTCTATCATTCGCTGGTGTCTACTACTTTCTCTCTGGAGTAAATTGGAAGGCGTTGCTTTTATTTGCCATGTCCAGTGTTGCCCGATCAAATGGTGTGATAAATGCAGGCTTCTTTCTGTTTCAGGCAATGCATCATTTCTATGATGCATTTTTCAAGCAAAATCAGACCTTGTTAGCATTGCAGGTTCTCATAGTTGCTTGTCTACGTTCAGTTTGTGTTTTTGTCCCATTTTTTATATTTCAACTTTATGGATACTTAAATATTTGTTTTGGAGAGGCATCATTCAAAGGAAGCAGATCTTGGTGCAATGCAAGAGTACCTTATCTATATGGCTTTATTCAAAGTCATTACTGGGAAGTTGGCTTCTTACGATATTTCCAGCTGAAACAATTACCAAATTTTCTTCTCGCATCACCTATATTGTTGCTTGGAATGGGCGCAATCATTGCATATGCAAAGAAAAATTATCATTTTCTTTTGTCTTTGGGATTTCAAGTTTCTTATTTGGAGTAAGGAGTACAGCTGCTGTGTTTTACTTTGTACACAAGAGGAAACTATCTAACGAGACTGCTGTGGCAAGAGAAGAGCTTCTAAATCCATCTAGATCCTCATCAACCTCCAAAAACCTGCCGATTCGGAACAGAACCAAAAAGAACAAATATTTAGACATACAGGCTACTCCGAACATTGCCCAAGAAAATGATGAAGCTACTAACTCTCCGATCGAACAAGGATTTTTTTCCACTTTAACGATCCCATTTATTCTACAGCTAGGTTTTATGGTTGCTGTAGCATCTTTTGCCATGTATGTACAGGTTGCCACACGCTTCTTATCTGTAAGTCCTCCAATCTATTGGTATCCAGCACATGTGATGGGATCCTCGCCAAATGGTTTCAAGTTGGGCTATGTTTTATGGGCAGTGTTTTTGAGCTATTTGTTTTTTGGTAGCCTGCTTTTTTCAAACTTCTATCCTTTCACATAAACATCGTTTCTCTCTTATTTGGCCACTTGGCAGATTTTGACATATTTAAAATTAACAACTTATGCTACCGCTCTCTTAAAAGGTGAAATAGAACAGAGCTTCCAAGCATTTGCACCTTTCAGGCAAGACCCTAGAAAGAAGGTATAATAGAAAATTTTGTTCGATGTTCCTGCTCTTGAAATTCATCCTGGGTGTAACTGTAAAACTAAAGAAGGATAAAATTTGCCTTTGCAACCAGTATGCACTTCAGGTTTGACATGCTCGGGCCTTATAGCCTGTGTATATGCCCATGTTGACCTTCGACTTTCTCATTTTTGGTGCTTAATCGAAGCATTCTCTCTGCAGTTTGCTTATTGTAGAGAAAAACTATTTGTCTGTTTTGCCCCACTCTTTGAGCATACTACATCCGTTTTGTGTAACTTTTTGTATTTCTTGTCAGCGTATGTACATACGGAACATATTTCAGTTTCGGTTGTGTTGAGATAACAGCAAATCTATTGTGTCCA

Ace file of the UniGene sp_v3.0_unigene1153

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phosphatidylinositol glycan, class V [Arabidopsis thaliana] gb\|AAT06426.1\| At1g11880 [Arabidopsis thaliana] gb\|AAT85753.1\| At1g11880 [Arabidopsis thaliana] gb\|AEE28808.1\| phosphatidylinositol glycan, class V [Arabidopsis thaliana]	-	-	0.0	53%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	55%

Source	Gene names
Sma3	At1g11880; F12F1.28; GSVIVT00024752001; LOC_Os12g31480; MtrDRAFT_AC147481g6v2; Os12g0498700; OsJ_36176; PHYPADRAFT_126249; POPTRDRAFT_413049; RCOM_0628780;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	-
Sma3	GPI anchor biosynthetic process	GO:0006506	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	GPI mannosyltransferase 2-like	IPR007315	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G11880.1	transferases, transferring hexosyl groups chr1:4007909-4010327 REVERSE LENGTH=489	53%
RefSeq	Arabidopsis thaliana	NP_172652.2	phosphatidylinositol glycan, class V [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002304011.1	predicted protein, partial [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9S9D1

Fln msg: Separated hits, possible frame ERROR between 1024 and 1027, and possible frame ERROR between 1632 and 1803, your sequence is longer than subject: 533 - 493

Fln protein: MSEVRMGRATSSSSVEMQSVLQLAVVSRILVLSLIVIWRCIATSYDTSSSLNPPCLSTTTKSIIDPHSPLILENERQICGVWSQLGKAIEGSVVWDSVYYVRIAQCGYEYEQSYAFLPLLPLCMRFLSKTVFAPLVPLMGYRAVLTLSGYILNNIAFVFAALFLYKLxxYVFKDSKAALRATSLFCFNPASIFYSSIYSESLFSLLSFAGVYYFLSGVNWKALLLFAMSSVARSNGVINAGFFLFQAMHHFYDAFFKQNQTLLALQVLIVACLRSVCVFVPFFIFQLYGYLNICFGEASFKGSRSWCNARVPYLYGFIQSHYWEVGFLRYFQLKQLPNFLLASPILLLGMGAIIAYAKKNYHFLLSLGFQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIQATPNIAQENDEATNSPIEQGFFSTLTIPFILQLGFMVAVASFAMYVQVATRFLSVSPPIYWYPAHVMGSSPNGFKLGYVLWAVFLSYLFFGSLLFSNFYPFT*

Protein Length: 534

Fln nts: GATGCAGAGCGAGCAAATTCGAACGGAGAAGATACTTATCTAGTTACAGGAGGGTAAGGCCGCCGAGGTGCAGGGTGAGCAAATTCCAGGGGAGAGAAAAATGATGGATAGCAAATAAATTTTGACTGTGAATGACAACTAACTAGTGACTTCCATGGATGCATCTAAGAAAATAATTTCAAGGACATTGAGTCTGTCTGGAATATAATGTACTGTCGAATCTCTGGTCCGTAGCAAATTTTAAGAAATGATAAATAGCTAAGACCTATGTCATTCTGGCAGAGCAAGATCTTTGCAGTTGTTGTGGCGAATATGCCGCTGATGTGCAGAGAAAACAAATTCGAAGGGGGAGAAAAATAATGGATAACAATTCTTTTTGAACTGTGCAGGACAGCTAAGTAGTGAATTCCATGGACGTATTGAAGAAAATAACTTAAGGACATTGTGAAGTCTACCTGGAATATAATGAACTGTCCTATTATCATTCTGGCAGCTAGATTTTTGCAGTTCTCTGTGGTGA_-_ATGAGTGAAGTCAGGATGGGCCGAGCAACATCTTCTTCCTCGGTTGAAATGCAATCAGTTCTGCAGTTGGCAGTGGTTTCAAGGATTCTGGTGCTGAGTTTGATTGTGATATGGAGATGCATAGCTACTTCATATGACACATCGTCCTCTTTGAACCCACCTTGTCTGTCAACAACAACAAAATCAATCATTGATCCCCACTCTCCATTGATTTTGGAGAACGAGAGACAGATATGTGGTGTTTGGAGCCAGTTAGGCAAGGCCATAGAGGGAAGTGTTGTGTGGGATTCAGTATATTATGTGAGGATTGCGCAGTGTGGGTACGAATATGAACAATCCTATGCTTTTCTCCCATTGCTTCCTCTCTGCATGCGCTTTTTATCAAAAACAGTTTTTGCTCCATTGGTTCCTTTGATGGGATACAGGGCTGTATTGACTTTGTCTGGGTATATTCTCAACAACATTGCCTTTGTGTTTGCAGCCCTCTTCCTATACAAGCTAACxxxTTATGTTTTCAAAGATTCCAAGGCGGCCTTGCGTGCAACATCTCTTTTCTGTTTCAACCCAGCTTCAATATTCTATTCTTCAATATATTCAGAAAGTTTATTCTCTCTTCTATCATTCGCTGGTGTCTACTACTTTCTCTCTGGAGTAAATTGGAAGGCGTTGCTTTTATTTGCCATGTCCAGTGTTGCCCGATCAAATGGTGTGATAAATGCAGGCTTCTTTCTGTTTCAGGCAATGCATCATTTCTATGATGCATTTTTCAAGCAAAATCAGACCTTGTTAGCATTGCAGGTTCTCATAGTTGCTTGTCTACGTTCAGTTTGTGTTTTTGTCCCATTTTTTATATTTCAACTTTATGGATACTTAAATATTTGTTTTGGAGAGGCATCATTCAAAGGAAGCAGATCTTGGTGCAATGCAAGAGTACCTTATCTATATGGCTTTATTCAAAGTCATTACTGGGAAGTTGGCTTCTTACGATATTTCCAGCTGAAACAATTACCAAATTTTCTTCTCGCATCACCTATATTGTTGCTTGGAATGGGCGCAATCATTGCATATGCAAAGAAAAATTATCATTTTCTTTTGTCTTTGGGATTTCAAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACATACAGGCTACTCCGAACATTGCCCAAGAAAATGATGAAGCTACTAACTCTCCGATCGAACAAGGATTTTTTTCCACTTTAACGATCCCATTTATTCTACAGCTAGGTTTTATGGTTGCTGTAGCATCTTTTGCCATGTATGTACAGGTTGCCACACGCTTCTTATCTGTAAGTCCTCCAATCTATTGGTATCCAGCACATGTGATGGGATCCTCGCCAAATGGTTTCAAGTTGGGCTATGTTTTATGGGCAGTGTTTTTGAGCTATTTGTTTTTTGGTAGCCTGCTTTTTTCAAACTTCTATCCTTTCACATAA___ACATCGTTTCTCTCTTATTTGGCCACTTGGCAGATTTTGACATATTTAAAATTAACAACTTATGCTACCGCTCTCTTAAAAGGTGAAATAGAACAGAGCTTCCAAGCATTTGCACCTTTCAGGCAAGACCCTAGAAAGAAGGTATAATAGAAAATTTTGTTCGATGTTCCTGCTCTTGAAATTCATCCTGGGTGTAACTGTAAAACTAAAGAAGGATAAAATTTGCCTTTGCAACCAGTATGCACTTCAGGTTTGACATGCTCGGGCCTTATAGCCTGTGTATATGCCCATGTTGACCTTCGACTTTCTCATTTTTGGTGCTTAATCGAAGCATTCTCTCTGCAGTTTGCTTATTGTAGAGAAAAACTATTTGTCTGTTTTGCCCCACTCTTTGAGCATACTACATCCGTTTTGTGTAACTTTTTGTATTTCTTGTCAGCGTATGTACATACGGAACATATTTCAGTTTCGGTTGTGTTGAGATAACAGCAAATCTATTGTGTCCA

Fln Alignment:

Contig1153___WRCIATSYDTSSSLNPPCLSTTTKSIIDPHSPLILENERQICGVWSQLGKAIEGSVVWDSVYYVRIAQCGYEYEQSYAFLPLLPLCMRFLSKTVFAPLVPLMGYRAVLTLSGYILNNIAFVFAALFLYKLTxYVFKDSKAALRATSLFCFNPASIFYSSIYSESLFSLLSFAGVYYFLSGVNWKALLLFAMSSVARSNGVINAGFFLFQAMHHFYDAFFKQNQTLLALQVLIVACLRSVCVFVPFFIFQLYGYLNICFG--EASFKGSRSWCNARVPYLYGFIQSHYWEVGFLRYFQLKQLPNFLLASPILLLGMGAIIAYAKKNYHFLLSLGFQVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIQATPNIAQENDEATNSPIEQGFFSTLTIPFILQLGFMVAVASFAMYVQVATRFLSVSPPIYWYPAHVMGSSPNGFKLGYVLWAVXXXXXXXXXXXXXNFYPFT
A9S9D1______________WRTLASPYDTSAALNPPCL--------DPNQG----NEAPV--KWKNLGAAIEELVVWDSVYYVRIAECGYEYEQTHAFFPALPLMIRFVARNIFNRLDLLVGHRATLTVSGYVITNVSFVFAALYLYKLTxYVVEKEDLAWRAVCLFCFNPASVFYSAIYSESLFAFCSFCGLWQFVAGRTWTAALLFGLSSGVRSNGVLHAGFFLFQAMHCAYIAATQQGRCMRAVLAVVKAIFQSLVTVAPLIAFQGYGYLQHCGSSKEGTEEIARPWCNATIPYLYGFVQSHYWDVGFLRYFQVKQIPNFLLASPLLVLAAAALYTYGSFQPRLFFSLGFNIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIKADINVEKSYAEDSVNSFE-GFYSPAAVCFLIQMAVMVFVATCIMHVQVATRFLSVCPPIYWYAAHLMKSSVKEISIGRIIWTYYLSFLGLGSLLFINFYPFT

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
1129	12	12		75	0.975346
1130	12	87			0.992554
1132		75	12	12	0.975346
1133			12	87	0.992554
1138	12			87	0.992554
1139	87	12			0.992554
1187	25		75		1.0
1219			87	12	0.992554
1301		33	66		1.0
1543	27	72			1.0
1585	27		72		1.0
2032		33	66		0.997452
2035			33	66	0.997452
2037		66	33		0.997452
2039	66	33			0.997452
2040		33	66		0.997452
2048	66		33		0.997452
2050		33	66		0.997452
2051	33			66	0.997452
2052		33		66	0.997452
2054		33		66	0.997452
2074			40	60	1.0
2075	60			40	1.0
2076		40		60	1.0
2077			40	60	1.0
2080	40			60	1.0
2081		40		60	1.0
2082		40		60	1.0
2085			80	20	0.995493
2087		40	40		1.0
2089	66		33		1.0
2090			66	33	1.0
2094		33	66		1.0
2095	33	66			1.0
2200			11	88	0.923564
2203	88		11		0.923564
2205	88	11			0.923564
2206		11	88		0.923564
2207			88	11	0.923564
2211	88		11		0.923564
2212	88	11			0.923564
2214	88		11		0.923564
2215			88	11	0.923564
2216	88	11			0.923564
2219	88			11	0.923564
2220		11	88		0.923564
2482	25			75	0.996473
2485	75			25	0.996473
2537			33	66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
690	701	CAA CAA CAA CAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain