SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1151

Length: 1887 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1151

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calreticulin n=4 Tax=BEP clade RepID=B1NF32_WHEAT	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Calreticulin/calnexin	IPR001580	-	-
Sma3	Calreticulin/calnexin, conserved site	IPR018124	-	-
Sma3	Calreticulin	IPR009169	-	-
Sma3	Calreticulin/calnexin, P	IPR009033	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G08450.1	CRT3, PSL1, EBS2, AtCRT3 calreticulin 3 chr1:2668008-2671800 REVERSE LENGTH=424	77%
RefSeq	Arabidopsis thaliana	NP_563816.1	calreticulin-3 [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002327993.1	predicted protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRK0

Fln msg:

Fln protein: MGSVSSFLLLLILLVFSHLSCFNGEVIFEERFDEGWESRWVKSDWKRSEGTAGSFKHTAGKWAGDHDDKGIQTYPDARHYAISAKIPEFTNKGRTLVLQYSIKFEQDIECGGGYIKLLSGYVNQKKFSGDTPYSVMFGPDICGTDKKKLHVIVSYQGQNYPIKKDLVCETDKLTHVYTLIIRPDASYSILIDNREREFGSLYTDWDILPPRKIRDLKAKKPKDWDDREYIDDPDATKPEGYDNIPAEIPDPKAKKPDDWEEEDDGIWKAPKIPNPAYKGPWKAKKIKNPNYKGKWKTPWVDNPEFEDDPDLYVFKPLKYVGIEVWQVKAGSVYDNILVCDDPQYAREVAEETWGRNREMEKEAFEEAEKKRRAEEEEEAERARQEGERRRRERDHDRRYHDKDRMRERLRRRHQPHDDYDDYHDEL*

Protein Length: 428

Fln nts: CAGGACTTTGACTCACAGGCCAGACTTATCTCGTGCGTACTTTATCACACTGCGACCCAATCGACCGCCTCCTATGCGCTGTCAAGTGATATTATTGGGTAGCAGGGGCACAACCCACGCATTGATTAACACTAAGTTTCCTGTGGTCAGGGGTCAAGTCTTCCTATATTGGAAAAACTCATTGACTTTGTGCAGTTGTCTATTCCCATGATCCTCCATTTAGAGGCCTGGAGGATTGAATCCCAGAATGCATTTCCCAATGCTCGCATAACTTAGTTGCCTTGCGTTTTGCCTCGTTTCC_-_ATGGGGAGTGTTTCTTCTTTTCTGCTTTTGCTGATATTGCTTGTGTTCTCCCATCTCAGCTGCTTCAATGGGGAGGTCATATTTGAAGAAAGGTTTGATGAGGGGTGGGAAAGTCGATGGGTGAAGTCTGACTGGAAACGAAGTGAAGGAACAGCTGGATCATTTAAACACACTGCCGGAAAATGGGCTGGAGACCACGATGACAAAGGGATTCAAACTTATCCGGATGCCAGACATTATGCAATATCAGCCAAGATACCAGAATTTACCAATAAAGGCAGGACCTTGGTACTTCAGTATTCTATCAAATTTGAGCAGGATATTGAATGTGGTGGTGGGTATATAAAGCTCCTTAGTGGTTATGTTAATCAAAAAAAGTTCAGTGGAGACACTCCGTACAGTGTAATGTTTGGTCCCGATATCTGTGGCACAGACAAAAAGAAGCTCCATGTCATAGTATCATATCAAGGTCAGAATTATCCGATAAAGAAAGATCTTGTCTGTGAAACAGACAAGCTTACTCATGTTTACACTTTAATTATAAGACCGGACGCATCCTACAGCATACTAATTGACAATAGAGAAAGGGAATTTGGAAGCCTCTATACTGATTGGGATATTCTTCCACCTCGAAAAATCAGAGATTTGAAGGCCAAAAAGCCTAAAGATTGGGATGATAGAGAGTATATTGATGATCCTGATGCCACAAAACCAGAGGGCTACGATAATATTCCAGCAGAAATACCAGATCCAAAGGCAAAAAAGCCTGATGACTGGGAGGAGGAAGATGATGGGATATGGAAAGCACCAAAGATCCCCAATCCAGCATACAAGGGGCCTTGGAAGGCGAAGAAAATTAAAAATCCCAACTACAAGGGGAAGTGGAAAACTCCATGGGTTGACAATCCAGAATTTGAAGATGATCCAGATCTTTATGTCTTCAAGCCTTTGAAATATGTGGGGATTGAAGTCTGGCAGGTGAAGGCAGGCTCGGTTTATGACAACATTTTAGTGTGTGATGATCCTCAGTATGCTCGGGAGGTTGCTGAGGAGACATGGGGAAGAAACAGGGAGATGGAAAAGGAAGCTTTTGAGGAGGCAGAGAAAAAGAGGCGCGCTGAAGAGGAAGAGGAAGCGGAACGGGCAAGACAAGAAGGGGAGCGCAGGAGACGTGAGCGGGATCATGATAGGAGATACCATGATAAAGACCGCATGAGAGAACGACTTCGAAGGAGACACCAACCGCATGACGACTACGATGATTACCATGATGAACTGTGA___GACGTCCCTCAACAGCAATTAAACTGCAATCCAACATGAAGAACATCTTTATATATTCACTAAGAAGGGCACAATGCCCTTTTTTGCAATTTTCTTCTAATCTAGTATATTTTGTTTGTGCATGCAAATGCTTCAATGAACATTCAAGTCGAAGTCACTTCTATTGTAATGAAATTGTGTTGGAATTTTGAATGTATTGAACTATTTTCATTCACGACTATGCATTTAATAAGAGTACATTTCACCTTTCTTGCCACAGAAATCCTGCAGCATCTGTATTCTATTGTGCTGATATTTTTATCGCA

Fln Alignment:

Contig1151___CFNGEVIFEERFDEGWESRWVKSDWKRSEGTAGSFKHTAGKWAGDHDDKGIQTYPDARHYAISAKIPEFTNKGRTLVLQYSIKFEQDIECGGGYIKLLSGYVNQKKFSGDTPYSVMFGPDICGTDKKKLHVIVSYQGQNYPIKKDLVCETDKLTHVYTLIIRPDASYSILIDNREREFGSLYTDWDILPPRKIRDLKAKKPKDWDDREYIDDPDATKPEGYDNIPAEIPDPKAKKPDDWEEEDDGIWKAPKIPNPAYKGPWKAKKIKNPNYKGKWKTPWVDNPEFEDDPDLYVFKPLKYVGIEVWQVKAGSVYDNILVCDDPQYAREVAEETWG
B8LRK0______________CFNGEVIFEERFDDGWESRWVKSDWKRSEGTAGSFKHTAGKWAGDPDDKGIQTYPDARHYAISAKIPEFNNKDRTLVLQYSIKLEQDIECGGGYIKLLSGYVNQKKFSADTPYSVMFGPDICGTDKKKLHVIISYQGQNYPIKKDLTCETDKLTHVYTLIIRPDASYSILIDNREREYGSLYTDWDILPPRKIKDFKAKKPKDWDDREYIDDPDATKPEGYDYIPAEIPDPKAKKPDDWDEEDDGIWKAPKIPNPAYKGPWKAKKIKNPNYKGKWKTPWVDNPEFEDDPNLYVFKPLKYVGIEVWQVKAGSVYDNVLVCDDPEYAQEVAEETWG

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
93	33			66	0.997452
186	20	80			0.995493
188			20	80	0.995493
189			20	80	0.995493
191			20	80	0.995493
203		20		80	0.995493
359	63	36			1.0
428	25			75	1.0
648	85		14		0.993533
715		12		87	0.992554
1018	13		86		0.999973
1376	90		10		0.90298
1480	10		90		0.90298
1481		10	90		0.90298
1484		90		10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain