SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1139

Length: 2319 nt

UniGene Fasta

>sp_v3.0_unigene1139
TCAGGAAAAGCATGCAAGAATCAAATCACATTTGATACTTTGAACGGGACTTATATAATGTAACAATATTGTTATATTGGTGGGAGGAAGAATTGTAGCTTCTATGGCAAGCACCTACCACAAGCTCTGAAGTTGGTAGGAATGCACGTGCCAAGATATCCTTTACAAATATTCTTGACCCTGCAATCTGTAATCAAGTTCCAAGTTATATAACACACAAGCAGTCTCTGCACCACCTTGAGTGTGTGCATTGCCCTTGGGAGTTTTGGATACCATCCAAAATGTCTACACCCCATGCTATGCAAATGGCTATGCCCACAGCTGATGCAAGAATGGCATGTGGGTTGTCATCTGTGGCACATAAGCAATCTTCTTTACTTACTCTGAATTCAGCATTGGAGGATCAAGTCAAATGGCAGGCTAAGAAGGGTCTGCTAAGGTTTAGAGTTTCTACACGCCAAAAGATGGTTATAGGTACAGATTCAATTGCTGACAAGCCCGTTAACAGATGTAGTAGATCAGGGGTGTTTAGGCCAAGGATTGTAGCGCAGCAGGTTCGCACGCAGGCAGCATCAGGAGCTGATATAGGCTTCCAAGATGATGGTATTGGATTGGATGCACTTGCAGATGCTGCAAGACCATCAAAATTGATGGAGTTTCTCACATCAGAGAGAGCCAAAGTTGTTGCCATGATGGCTCTGGGGTTGTCACTTTGTAATGCCAATAGAATTGTAATGTCTGTTGCCATCGTGCCTCTCACAGCAACTCATGGGTGGAGCAGCTCTTTTGCAGGAATTGTTCAGTCATCCTTCCTATGGGGATACTTACTGTCACCTATTGCTGGAGGAGCCTTGGCAGATCGTTATGGTGGCAAAAAGGTGATGGCATGGGGTTTGGCAATATGGTCATTGGCAACTATGCTCACTCCATGGGCTGCTAACCATTCAGTAGGAATGCTTCTTGCTATACGTGCACTATTTGGTTTTGCCGAAGGTGTAGCTTTACCTTGTATGAACACCATTATTTCGAAGTGGTTTCCCCGTACCGAGCGTGCTACAGCAGTGGGCCTTTCAATGGCTGGTTTTCATTTGGGTAATGTGATAAGCTTACTTGCTACCCCTGCTCTAATGTCACACGGTGGGGTTTTCGGGCCTTTTGTTACCTTTGGACTATTAGGATTTCTGTGGCTGTCAGTATGGTTGCCAGCCATATCAAATGACCCTCAGTTTCATCCTCGAATATCAAAATCAGAACTTTTGTATATTCAGGATGGAAATAAGAGTTCTTCAATGTCTAGAAAGTCTCCTAGCCAGACTGCTAACCGAATGCCTCCTTTTCGTCTGTTATTTTCTAAGACACCAACATGGGCGATAATAGTTGCAAATGTTACGAATAATTGGGGTTATTTTGTTCTTTTATCATGGATGCCAGTGTATTTCAAAACTGTATTTAATGTAAATTTAAAACAAGCGGCATGGTTCAGTGCCGTTCCATGGGCATCGATGGCATTTGCAGGGTATCTTGCTGGTGCTTGCTCAGACTCTTTGATTCAATCAGGATACACAGTCACATTAGTGCGCAAAATTATGCAGTCGATTGGTTTCATTGGTCCAGGACTAGCACTCCTGGGTTTAAATGCTGCCCAGAGTCCAACGATCGCAGCTGCTTGGCTTACTGCAGCACTTAGTTTGAGTTCATTCAGCCAAGCTGGGTTTCTGCTAAATATGCAGGAAATAGCCCCCCAATATGCAGGTGTCCTTCATGGAATTACAAATACCATTGGGACATTTGCAGCAATTGTCAGCACAATCGGAACGGGGTATTTTGTACAATGGTTGGGTTCTTTCCAGTGTTTCCTGACACTAACTGCAGTTTTATATTTTGTGACCACCATTTTCTGGAATCTTTATGCAACAGGGGAAAGGGTATTTTATTAAGTAGCAGAATGAATATATTGTATAGTACCATAAAATTTAGTAGTTTGCTAAATCTGGCCAATCAAGAGGTTTCTTTACAAGGAATTTGCTAAGGTAGCAACAGCTAAAAGAAAGCAGGGGTGCTCACATATTTTGCCCAGTTAGATCCATTGCTATCCAGTCCGTCAAATTGCTTGGAATTTAGCAAGAGCTAATTTTTATGTTTGTCGTACCTTCCTAGTACAATTGCTATAGGCTTGAAGATTAGAAGTTCTTTATCATGCAGTATTTATCCCTGCACATCCATTTAATTGTAATTATTATTTTTTCTGATATCAATTCATAAGAGACACTGTGCTGTCATACCGTGGAGAGTAATGGATAGATGGTACTAGTTCTATTA

Ace file of the UniGene sp_v3.0_unigene1139

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sialin, putative n=1 Tax=Ricinus communis RepID=B9SPE0_RICCO	-	-	0.0	63%
FL-Next	sp=Probable anion transporter 3, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	67%
Sma3	Sialin, putative	-	-	8.192e-13	-

Source	Gene names
Sma3	ANTR1; ANTR2; ANTR3; ANTR4; A_IG005I10_nn; At2g29650; At2g38060; At3g46980; At4g00370; F5I10.7; GSVIVT00021464001; GSVIVT00024146001; GSVIVT00024164001; MICPUCDRAFT_44722; MICPUN_98168; OJ1003_C09.34; OJ1576_F01.6; OSJNBa0036E02.3; OSTLU_2927; Os01g027970

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid inner membrane	GO:0009528	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	inorganic phosphate transmembrane transporter activity	GO:0005315	Molecular Function	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	symporter activity	GO:0015293	Molecular Function	-
Sma3	inorganic diphosphate transmembrane transporter activity	GO:0030504	Molecular Function	-
Sma3	sodium ion binding	GO:0031402	Molecular Function	-
Sma3	sodium ion transport	GO:0006814	Biological Process	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G38060.1	" PHT4;2 phosphate transporter 4;2 chr2:15922727-15925623 REVERSE LENGTH=512"	67%
RefSeq	Arabidopsis thaliana	NP_181341.2	putative anion transporter 3 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002323555.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q7XJR2

Fln msg: your sequence is longer than subject: 552 - 512

Fln protein: MSTPHAMQMAMPTADARMACGLSSVAHKQSSLLTLNSALEDQVKWQAKKGLLRFRVSTRQKMVIGTDSIADKPVNRCSRSGVFRPRIVAQQVRTQAASGADIGFQDDGIGLDALADAARPSKLMEFLTSERAKVVAMMALGLSLCNANRIVMSVAIVPLTATHGWSSSFAGIVQSSFLWGYLLSPIAGGALADRYGGKKVMAWGLAIWSLATMLTPWAANHSVGMLLAIRALFGFAEGVALPCMNTIISKWFPRTERATAVGLSMAGFHLGNVISLLATPALMSHGGVFGPFVTFGLLGFLWLSVWLPAISNDPQFHPRISKSELLYIQDGNKSSSMSRKSPSQTANRMPPFRLLFSKTPTWAIIVANVTNNWGYFVLLSWMPVYFKTVFNVNLKQAAWFSAVPWASMAFAGYLAGACSDSLIQSGYTVTLVRKIMQSIGFIGPGLALLGLNAAQSPTIAAAWLTAALSLSSFSQAGFLLNMQEIAPQYAGVLHGITNTIGTFAAIVSTIGTGYFVQWLGSFQCFLTLTAVLYFVTTIFWNLYATGERVFY*

Protein Length: 553

Fln nts: TCAGGAAAAGCATGCAAGAATCAAATCACATTTGATACTTTGAACGGGACTTATATAATGTAACAATATTGTTATATTGGTGGGAGGAAGAATTGTAGCTTCTATGGCAAGCACCTACCACAAGCTCTGAAGTTGGTAGGAATGCACGTGCCAAGATATCCTTTACAAATATTCTTGACCCTGCAATCTGTAATCAAGTTCCAAGTTATATAACACACAAGCAGTCTCTGCACCACCTTGAGTGTGTGCATTGCCCTTGGGAGTTTTGGATACCATCCAAA_-_ATGTCTACACCCCATGCTATGCAAATGGCTATGCCCACAGCTGATGCAAGAATGGCATGTGGGTTGTCATCTGTGGCACATAAGCAATCTTCTTTACTTACTCTGAATTCAGCATTGGAGGATCAAGTCAAATGGCAGGCTAAGAAGGGTCTGCTAAGGTTTAGAGTTTCTACACGCCAAAAGATGGTTATAGGTACAGATTCAATTGCTGACAAGCCCGTTAACAGATGTAGTAGATCAGGGGTGTTTAGGCCAAGGATTGTAGCGCAGCAGGTTCGCACGCAGGCAGCATCAGGAGCTGATATAGGCTTCCAAGATGATGGTATTGGATTGGATGCACTTGCAGATGCTGCAAGACCATCAAAATTGATGGAGTTTCTCACATCAGAGAGAGCCAAAGTTGTTGCCATGATGGCTCTGGGGTTGTCACTTTGTAATGCCAATAGAATTGTAATGTCTGTTGCCATCGTGCCTCTCACAGCAACTCATGGGTGGAGCAGCTCTTTTGCAGGAATTGTTCAGTCATCCTTCCTATGGGGATACTTACTGTCACCTATTGCTGGAGGAGCCTTGGCAGATCGTTATGGTGGCAAAAAGGTGATGGCATGGGGTTTGGCAATATGGTCATTGGCAACTATGCTCACTCCATGGGCTGCTAACCATTCAGTAGGAATGCTTCTTGCTATACGTGCACTATTTGGTTTTGCCGAAGGTGTAGCTTTACCTTGTATGAACACCATTATTTCGAAGTGGTTTCCCCGTACCGAGCGTGCTACAGCAGTGGGCCTTTCAATGGCTGGTTTTCATTTGGGTAATGTGATAAGCTTACTTGCTACCCCTGCTCTAATGTCACACGGTGGGGTTTTCGGGCCTTTTGTTACCTTTGGACTATTAGGATTTCTGTGGCTGTCAGTATGGTTGCCAGCCATATCAAATGACCCTCAGTTTCATCCTCGAATATCAAAATCAGAACTTTTGTATATTCAGGATGGAAATAAGAGTTCTTCAATGTCTAGAAAGTCTCCTAGCCAGACTGCTAACCGAATGCCTCCTTTTCGTCTGTTATTTTCTAAGACACCAACATGGGCGATAATAGTTGCAAATGTTACGAATAATTGGGGTTATTTTGTTCTTTTATCATGGATGCCAGTGTATTTCAAAACTGTATTTAATGTAAATTTAAAACAAGCGGCATGGTTCAGTGCCGTTCCATGGGCATCGATGGCATTTGCAGGGTATCTTGCTGGTGCTTGCTCAGACTCTTTGATTCAATCAGGATACACAGTCACATTAGTGCGCAAAATTATGCAGTCGATTGGTTTCATTGGTCCAGGACTAGCACTCCTGGGTTTAAATGCTGCCCAGAGTCCAACGATCGCAGCTGCTTGGCTTACTGCAGCACTTAGTTTGAGTTCATTCAGCCAAGCTGGGTTTCTGCTAAATATGCAGGAAATAGCCCCCCAATATGCAGGTGTCCTTCATGGAATTACAAATACCATTGGGACATTTGCAGCAATTGTCAGCACAATCGGAACGGGGTATTTTGTACAATGGTTGGGTTCTTTCCAGTGTTTCCTGACACTAACTGCAGTTTTATATTTTGTGACCACCATTTTCTGGAATCTTTATGCAACAGGGGAAAGGGTATTTTATTAA___GTAGCAGAATGAATATATTGTATAGTACCATAAAATTTAGTAGTTTGCTAAATCTGGCCAATCAAGAGGTTTCTTTACAAGGAATTTGCTAAGGTAGCAACAGCTAAAAGAAAGCAGGGGTGCTCACATATTTTGCCCAGTTAGATCCATTGCTATCCAGTCCGTCAAATTGCTTGGAATTTAGCAAGAGCTAATTTTTATGTTTGTCGTACCTTCCTAGTACAATTGCTATAGGCTTGAAGATTAGAAGTTCTTTATCATGCAGTATTTATCCCTGCACATCCATTTAATTGTAATTATTATTTTTTCTGATATCAATTCATAAGAGACACTGTGCTGTCATACCGTGGAGAGTAATGGATAGATGGTACTAGTTCTATTA

Fln Alignment:

Contig1139___ERAKVVAMMALGLSLCNANRIVMSVAIVPLTATHGWSSSFAGIVQSSFLWGYLLSPIAGGALADRYGGKKVMAWGLAIWSLATMLTPWAANHSVGMLLAIRALFGFAEGVALPCMNTIISKWFPRTERATAVGLSMAGFHLGNVISLLATPALMSHGGVFGPFVTFGLLGFLWLSVWLPAISNDPQFHPRISKSELLYIQDGNKXXXXXXXXXXQTANRMPPFRLLFSKTPTWAIIVANVTNNWGYFVLLSWMPVYFKTVFNVNLKQAAWFSAVPWASMAFAGYLAGACSDSLIQSGYTVTLVRKIMQSIGFIXXXXXXXXXXXXQSPTIXXXXXXXXXXXXXXXXXXXXXNMQEIAPQYAGVLHGITNTIGTFAAIVSTIGTGYFVQWLGSFQCFLTLTAVLYFVTTIFWNLYATGERVF
Q7XJR2______________ERIKVVILTACMMCLCNADRVVMSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLATLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITRSELRLIQAGKPVQPSTI-----SPKPNPSLRLLLSKLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQAAWFSALPWATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMGPGLSLLCLNFAKSPSCAAVFMTIALSLSSFSQAGFLLNMQDIAPQYAGFLHGISNCAGTLAAIVSTIGTGYFVQWLGSFQAFLTVTAFLYFATTVFWLLFATGERVF

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1529			33	66	1.0
1736	88	11			0.923564
1886			66	33	1.0
1928	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain