SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1137

Length: 1020 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1137

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_46.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7UCP6_VITVI	-	-	0.0	52%
FL-Next	sp=Beclin-1-like protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	43%
Sma3	Beclin 1 protein	-	-	3.72e-37	-

Source	Gene names
Sma3	At3g61710; F15G16.100; GSVIVT00027024001; LOC_Os03g15290; LOC_Os03g44200; OSJNBa0038E17.21; Os01g0681400; Os03g0644000; OsI_03281; OsI_10816; OsI_12784; OsI_12789; OsJ_03022; OsJ_10201; OsJ_11877; PHYPADRAFT_124820; PHYPADRAFT_223370; POPTRDRAFT_816633; R

Source	GOs	Term	Type	e value	Identity
Sma3	autophagy	GO:0006914	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Autophagy-related protein 6	IPR007243	-	0.0	-
Sma3	TonB box, conserved site	IPR010916	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002302626.1	predicted protein [Populus trichocarpa]	0.0	50%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9M367

Fln msg: Distance to subject end: 289 aas, your sequence is shorter than subject: 262 - 517

Fln protein: MKDEGEKARGVFIDPSIPRWLCQSCRHPLSIIGAESYAEKFGAEPSRSGGQALSIHGAGSVLGASRMDHSFVVLPKQRNQTPGFPPRPRTGGNQYPGSPPVTNLNQPVHHAVGSFDKAPPGQATNNGSDSHGGKAMDESFVVLPSAAASMYRYENSPEGGGLLSPNFVGNSSSALHINNASFSSSITVLKRAFDIVSSQTQVEQPLCLECMRVVSEKLDREFEDINRDIKAYEACLERLEEESPSGLSEAEFLREKEKVEEE

Protein Length: 263

Fln nts: CTCTTTTATTTTTTCACATTTTTTTGCCACACTCCAATCAAATGTTAGAAAACAGCACGTTTCCGAACTTATCGGATAAAATCTAATGTGAACTCCAAGTAACCTGAGTATCCCAGTCCACCTTGACAATTTATTGTTCATCTTCGCTATCTCCATATGTTCCTGTTCTAAATTTCATGCTTGCTGTAAGTCGTGTGCCTCCGCCATTCGAATTGACGACCTTCCCGGCAAA_-_ATGAAAGACGAAGGAGAAAAAGCCAGAGGTGTTTTCATCGATCCGAGCATCCCGAGATGGCTCTGCCAGAGTTGTCGACACCCTCTCTCCATCATCGGGGCAGAATCCTACGCAGAAAAGTTTGGAGCAGAGCCCTCAAGATCAGGGGGGCAGGCTTTGTCGATTCACGGGGCCGGGAGTGTATTGGGAGCCAGTCGAATGGACCATTCCTTTGTTGTTTTGCCCAAGCAGAGGAATCAGACACCTGGGTTTCCTCCTCGTCCTCGAACGGGTGGAAATCAGTACCCTGGCTCTCCTCCAGTGACCAATCTGAATCAGCCTGTTCATCATGCGGTGGGTTCTTTTGATAAAGCCCCGCCCGGACAAGCTACTAATAATGGATCTGACAGCCATGGTGGGAAGGCGATGGATGAATCATTTGTGGTGTTGCCATCTGCAGCTGCTTCGATGTATAGATATGAAAATTCGCCTGAAGGAGGTGGTCTGCTCTCTCCGAATTTTGTTGGGAATTCCAGCAGTGCACTGCACATTAACAATGCTAGTTTCAGTTCCAGTATAACTGTTTTGAAGCGGGCCTTTGATATCGTTTCTTCACAAACACAGGTTGAGCAGCCTTTATGCTTGGAATGCATGCGGGTCGTGTCTGAAAAACTTGATCGAGAGTTTGAAGATATTAATAGGGACATTAAGGCTTATGAAGCATGTCTTGAACGCCTTGAAGAGGAGTCCCCCAGTGGTCTTAGTGAGGCCGAATTTCTTCGAGAAAAAGAAAAGGTTGAAGAAGAAGA

Fln Alignment:

Contig1137___EKARGVFIDPSIPRWLCQSCRHPLSIIGAESYAEKFGAEPSRSGGQALSIHGAGSVLGASRMDHSFVVLPKQRNQXXXXXXXXXXXXNQYPGSPPVTNLNQPVHHAVGSFDKAPPGQATNNGSDSHGGKAMDESFVVLPSAAASMYRYENSPEGGGLLSPNFVGNSSSALHINNASFSSSITVLKRAFDIVSSQTQVEQPLCLECMRVVSEKLDREFEDINRDIKAYEACLERLEEESPSGLS
Q9M367______________DKSRTIPIDPNLPKWVCQNCHHSLTIVGVDSYAGKFFNDPPPSATQGSSIHGANSVLGSTRMDNSFVVLPRHKPP-------------QSQGIPP-----------------RPRGASSPQPDATQSGKAMEESFVVV-------YKSEPVSDSGGSHNLSLEVGQNGPLHSNTSGFNATINVLTRAFDIARTQTQVEQPLCLECMRVLSDKLEKEVEDVTRDVEAYEACVQRLEGETQDVLS

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
113	50	50			1.0
334	87		12		0.992554
338		12		87	0.992554
383		90	10		0.90298
384	90		10		0.90298
406		90		10	0.90298
451		50		50	1.0
473	88			11	0.923564
521	11		88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain