SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1130

Length: 2987 nt

UniGene Fasta

>sp_v3.0_unigene1130
ACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGAATCAAGTGGCGAGTTGTAACTCAGTATATCTCAGGTCACTGGGCTACACTGCAGGTAATTCCATGGAAAACAGGCCTTTATAGTGCACTTAATTGCACGCTGTGAGACTTATTTAATAGACCGTGTTGCAGAGGGCAGGTAAGGGACGGGGGAGAAAGGGCCAAAATGGGAATTGGAATGCTCGCATTTCAGGCGGCAAAGAGATCAAAATCGCTAGCGGGGCGCTTATGGGCCGTGCAGCAGCAGCAGCGAGAGGCGTTGGGACCCAACGGCGGGGTGTGGATGCGGGCAATATCTTCGTCTCCAGCGAGGGAAACGGAAGCGAGCGCAGAGAAAAGAACGCCTGTGGCAGGAGCGAGGGTGGAGATCCCCAAGCCGGAGGAGGCTTTCGAAGTGACCGTGGATGGTTACCCAGTCAAGATTCCGAAGGGCATGACGGTGCTCCAAGCCTGCGAGTTAGCGGGGGTCGATATCCCTCGCTTCTGCTATCATTCCCGCCTCTCTATCGCCGGAAATTGCCGTATGTGTCTCGTCGAGGTCGAGAAGAGTCCCAAGCCCGTGGCATCTTGCGCCATGCCTGCGCTTCCTGGCATGAAGATAAAGACTGATACTCCGATGGCGAAAAAGGCAAGGGAAGGGGTGATGGAGTTTCTGTTGATGAATCATCCGCTGGATTGTCCAATCTGTGACCAAGGAGGGGAGTGCGATCTGCAGGATCAGTCCATGGCTTTCGGATCGGATCGCGGGCGTTTCGTCGAAACAAAAAGATCCGTGGTGGATAAGAATCTCGGTCCTCTCGTCAAGACTGTCATGACCAGGTGTATTCAGTGTACAAGGTGTGTTAGATTTGCTTCTGAAGTTGCTGGAGTACAGGACCTTGGCATGTTGGGACGTGGAAGTGGTGAAGAAATTGGCACGTATGTGGAAAGATTGATGACGAGTGAACTTTCAGGGAATGTGATAGATATCTGTCCTGTTGGAGCCCTTACATCTAAACCATTTGCATTCAAAGCAAGAAACTGGGAACTAAAGGGCACAGAGACCATTGATGTTTCTGATGCAGTTGGATCCAATATTAGAATTGATAGTCGAGGTCCAGAAGTGATGCGGGTTCTTCCTCGCCTAAATGAGGACATAAATGAAGAGTGGATATCAGACAAGACGCGGTTTTCTTATGATGGTCTTAAGCGACAAAGGCTAAATGAGCCAATGATGCGCCGACCTGATGGTCGTCTTCAACCTGTGACCTGGCACGATGCTCTTGAGGTTATTGCAGAGGTTACCCAGCAAGTAAAGCCAGAAGAAATGGTTGCAATTGCTGGGAAACTCTCTGATGTTGAATCCATAATGGCTTTGAAAGATTATATGAACAGAATGGGGTCTGAGAACATATGGTGTGAAGGGAATGGCATGAATCCTCAGGCTGATCTGCGGTCTGAATATCTCTTGAATACAAGCATTGCGGGCCTGGAGAAGGGAGATGCTTTTCTCTTTGTTGGTACAAATCCAAGAGTTGAAGCACCAATGGTGAATGCAAGGATAAGGAAAGCTGTAAGAGCAGGACATGCAAAAGTTGCTTCTGTTGGCCCTCCTACGGACTTAGCTTATGAACATCAGCATTTAGGCATTGGACCAGAAACACTTATTCAGATAGCTGAAGGCAGGCATCCGTTTTGTTCAACTCTGGCTTCTGCAAAATATCCTGTGCTAATTGTTGGGGCTGGTATTTTCGAACGGAAAGATAAAGATGCTATTATGGCTGCAGTTGATATTATTGTCAAGCATGCCAAAGTTATTAGGAATGAATGGAATGGTTTCAATGTCCTTTTACTGAATGCTGCTCAAGCTGGGGGCCTAGATCTCGGTTTTATCCCTGGTTCTGGTTCAAAGATTGGCATTGAAAATGCAAAATTTGTTTACTTGCTAGGAGCAGATGACATTCAGGTTGACAAAATCTCCAAGGATGCATTTGTAGTTTATCAAGGGCACCATGGTGATCGAAGTGTTTACAGGGCTAATATGATTTTACCAGGGGTGGCTTTTTCTGAGAAGGAAGGAACATATGAAAATGCAGAAGGTTGTACTCAGCAGACCATCCCTGCAGTTCCCACAGTTGGTGATTCTAGGGATGACTGGAAAATTCTTAGAGCTTTATCTGAAGTTTCTGGAGTAAAACTCCCATATGATACAGTAAATGCACTTCGTACTCGCATTCGAGCTGTGTCCCCAAATTTGTTTCGAGTTGATGAGAGGGAACCTGCATCAGCATGGCTTCGAGAACTGAAGCCTGAATTCAACTCAAAAATGAGTCGAAGACCTTTTACCAATGCTATTGATAACTTCTACATGACTGATTCTATCTGTCGGGCCTCAAAAACAATGGCTCAGTGCACTGCCACATTACTCAGCCAGAAGTAATAAGCACTCCTAAGAACTTGTTTTCCAGAGCCATTAAAAATGTGCAGGATCTGCAATCTGCACACTTTGACTATTTATTCTTGTCTTTTCTGATATGTTCATGGGATCTTCTTGACGTGTAAGTGGTAGCAATGGTGACACGATGTGCCGTGCATCTACCTTTCATTGAATAATTTTGTGTGGCTTTTTTGTCTCTTTCATATCATCTTGATGCATTTATTTATTTAAATGCTGAATGACACCTAGCAGAGGAAAAACTATTTAATGGCAGAAGTGGTACTGTGCTTGAATTATTTTTTGGTTTTATTCCATGCAACTTGCATATACCCTATTTATATCTGGTTGGTAGGTGTTCGATTGTGCTGCACAATGGAGACTTTTGCTATTCAATTGTAAGTTGTAACGAGTCAGTGCCTGTTAGTATTATATTATTATTGGCACCGCTCCTTTTTTTTCAGTTCTATTCGCAACATCGCCATCAGTGAACTTTTTTATATTTAGAAACTTGTGGATATAAAGTTGCAACT

Ace file of the UniGene sp_v3.0_unigene1130

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NADH-ubiquinone oxidoreductase 75 kDa subunit n=1 Tax=Picea sitchensis RepID=B8LMM8_PICSI	-	-	0.0	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%

Source	ECs	Term	Type	e value	Identity
Sma3	NADH dehydrogenase (ubiquinone).	EC:1.6.5.3	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Oxidative phosphorylation	00190		0.0	%
Sma3	Metabolic pathways	01100		0.0	%

Source	InterPros	Term	Type	Identity
Sma3	2Fe-2S ferredoxin-type domain	IPR001041	-	-
Sma3	Molybdopterin oxidoreductase	IPR006656	-	-
Sma3	NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site	IPR000283	-	-
Sma3	NADH:ubiquinone oxidoreductase, subunit G	IPR010228	-	-
Sma3	NADH-quinone oxidoreductase, chain G, C-terminal	IPR015405	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G37510.2	-	69%
RefSeq	Arabidopsis thaliana	NP_568550.1	NADH-ubiquinone oxidoreductase subunit [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002305231.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMM8

Fln msg:

Fln protein: MGIGMLAFQAAKRSKSLAGRLWAVQQQQREALGPNGGVWMRAISSSPARETEASAEKRTPVAGARVEIPKPEEAFEVTVDGYPVKIPKGMTVLQACELAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPMAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFVETKRSVVDKNLGPLVKTVMTRCIQCTRCVRFASEVAGVQDLGMLGRGSGEEIGTYVERLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVSDAVGSNIRIDSRGPEVMRVLPRLNEDINEEWISDKTRFSYDGLKRQRLNEPMMRRPDGRLQPVTWHDALEVIAEVTQQVKPEEMVAIAGKLSDVESIMALKDYMNRMGSENIWCEGNGMNPQADLRSEYLLNTSIAGLEKGDAFLFVGTNPRVEAPMVNARIRKAVRAGHAKVASVGPPTDLAYEHQHLGIGPETLIQIAEGRHPFCSTLASAKYPVLIVGAGIFERKDKDAIMAAVDIIVKHAKVIRNEWNGFNVLLLNAAQAGGLDLGFIPGSGSKIGIENAKFVYLLGADDIQVDKISKDAFVVYQGHHGDRSVYRANMILPGVAFSEKEGTYENAEGCTQQTIPAVPTVGDSRDDWKILRALSEVSGVKLPYDTVNALRTRIRAVSPNLFRVDEREPASAWLRELKPEFNSKMSRRPFTNAIDNFYMTDSICRASKTMAQCTATLLSQK*

Protein Length: 752

Fln nts: ACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGAATCAAGTGGCGAGTTGTAACTCAGTATATCTCAGGTCACTGGGCTACACTGCAGGTAATTCCATGGAAAACAGGCCTTTATAGTGCACTTAATTGCACGCTGTGAGACTTATTTAATAGACCGTGTTGCAGAGGGCAGGTAAGGGACGGGGGAGAAAGGGCCAAA_-_ATGGGAATTGGAATGCTCGCATTTCAGGCGGCAAAGAGATCAAAATCGCTAGCGGGGCGCTTATGGGCCGTGCAGCAGCAGCAGCGAGAGGCGTTGGGACCCAACGGCGGGGTGTGGATGCGGGCAATATCTTCGTCTCCAGCGAGGGAAACGGAAGCGAGCGCAGAGAAAAGAACGCCTGTGGCAGGAGCGAGGGTGGAGATCCCCAAGCCGGAGGAGGCTTTCGAAGTGACCGTGGATGGTTACCCAGTCAAGATTCCGAAGGGCATGACGGTGCTCCAAGCCTGCGAGTTAGCGGGGGTCGATATCCCTCGCTTCTGCTATCATTCCCGCCTCTCTATCGCCGGAAATTGCCGTATGTGTCTCGTCGAGGTCGAGAAGAGTCCCAAGCCCGTGGCATCTTGCGCCATGCCTGCGCTTCCTGGCATGAAGATAAAGACTGATACTCCGATGGCGAAAAAGGCAAGGGAAGGGGTGATGGAGTTTCTGTTGATGAATCATCCGCTGGATTGTCCAATCTGTGACCAAGGAGGGGAGTGCGATCTGCAGGATCAGTCCATGGCTTTCGGATCGGATCGCGGGCGTTTCGTCGAAACAAAAAGATCCGTGGTGGATAAGAATCTCGGTCCTCTCGTCAAGACTGTCATGACCAGGTGTATTCAGTGTACAAGGTGTGTTAGATTTGCTTCTGAAGTTGCTGGAGTACAGGACCTTGGCATGTTGGGACGTGGAAGTGGTGAAGAAATTGGCACGTATGTGGAAAGATTGATGACGAGTGAACTTTCAGGGAATGTGATAGATATCTGTCCTGTTGGAGCCCTTACATCTAAACCATTTGCATTCAAAGCAAGAAACTGGGAACTAAAGGGCACAGAGACCATTGATGTTTCTGATGCAGTTGGATCCAATATTAGAATTGATAGTCGAGGTCCAGAAGTGATGCGGGTTCTTCCTCGCCTAAATGAGGACATAAATGAAGAGTGGATATCAGACAAGACGCGGTTTTCTTATGATGGTCTTAAGCGACAAAGGCTAAATGAGCCAATGATGCGCCGACCTGATGGTCGTCTTCAACCTGTGACCTGGCACGATGCTCTTGAGGTTATTGCAGAGGTTACCCAGCAAGTAAAGCCAGAAGAAATGGTTGCAATTGCTGGGAAACTCTCTGATGTTGAATCCATAATGGCTTTGAAAGATTATATGAACAGAATGGGGTCTGAGAACATATGGTGTGAAGGGAATGGCATGAATCCTCAGGCTGATCTGCGGTCTGAATATCTCTTGAATACAAGCATTGCGGGCCTGGAGAAGGGAGATGCTTTTCTCTTTGTTGGTACAAATCCAAGAGTTGAAGCACCAATGGTGAATGCAAGGATAAGGAAAGCTGTAAGAGCAGGACATGCAAAAGTTGCTTCTGTTGGCCCTCCTACGGACTTAGCTTATGAACATCAGCATTTAGGCATTGGACCAGAAACACTTATTCAGATAGCTGAAGGCAGGCATCCGTTTTGTTCAACTCTGGCTTCTGCAAAATATCCTGTGCTAATTGTTGGGGCTGGTATTTTCGAACGGAAAGATAAAGATGCTATTATGGCTGCAGTTGATATTATTGTCAAGCATGCCAAAGTTATTAGGAATGAATGGAATGGTTTCAATGTCCTTTTACTGAATGCTGCTCAAGCTGGGGGCCTAGATCTCGGTTTTATCCCTGGTTCTGGTTCAAAGATTGGCATTGAAAATGCAAAATTTGTTTACTTGCTAGGAGCAGATGACATTCAGGTTGACAAAATCTCCAAGGATGCATTTGTAGTTTATCAAGGGCACCATGGTGATCGAAGTGTTTACAGGGCTAATATGATTTTACCAGGGGTGGCTTTTTCTGAGAAGGAAGGAACATATGAAAATGCAGAAGGTTGTACTCAGCAGACCATCCCTGCAGTTCCCACAGTTGGTGATTCTAGGGATGACTGGAAAATTCTTAGAGCTTTATCTGAAGTTTCTGGAGTAAAACTCCCATATGATACAGTAAATGCACTTCGTACTCGCATTCGAGCTGTGTCCCCAAATTTGTTTCGAGTTGATGAGAGGGAACCTGCATCAGCATGGCTTCGAGAACTGAAGCCTGAATTCAACTCAAAAATGAGTCGAAGACCTTTTACCAATGCTATTGATAACTTCTACATGACTGATTCTATCTGTCGGGCCTCAAAAACAATGGCTCAGTGCACTGCCACATTACTCAGCCAGAAGTAA___TAAGCACTCCTAAGAACTTGTTTTCCAGAGCCATTAAAAATGTGCAGGATCTGCAATCTGCACACTTTGACTATTTATTCTTGTCTTTTCTGATATGTTCATGGGATCTTCTTGACGTGTAAGTGGTAGCAATGGTGACACGATGTGCCGTGCATCTACCTTTCATTGAATAATTTTGTGTGGCTTTTTTGTCTCTTTCATATCATCTTGATGCATTTATTTATTTAAATGCTGAATGACACCTAGCAGAGGAAAAACTATTTAATGGCAGAAGTGGTACTGTGCTTGAATTATTTTTTGGTTTTATTCCATGCAACTTGCATATACCCTATTTATATCTGGTTGGTAGGTGTTCGATTGTGCTGCACAATGGAGACTTTTGCTATTCAATTGTAAGTTGTAACGAGTCAGTGCCTGTTAGTATTATATTATTATTGGCACCGCTCCTTTTTTTTCAGTTCTATTCGCAACATCGCCATCAGTGAACTTTTTTATATTTAGAAACTTGTGGATATAAAGTTGCAACT

Fln Alignment:

Contig1130___MGIGMLAFQAAKRSKSLAGRLWAVQQQQREALGPNGGVWMRAISSSPARETEASAEKRTPVAGARVEIPKPEEAFEVTVDGYPVKIPKGMTVLQACELAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPMAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFVETKRSVVDKNLGPLVKTVMTRCIQCTRCVRFASEVAGVQDLGMLGRGSGEEIGTYVERLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVSDAVGSNIRIDSRGPEVMRVLPRLNEDINEEWISDKTRFSYDGLKRQRLNEPMMRRPDGRLQPVTWHDALEVIAEVTQQVKPEEMVAIAGKLSDVESIMALKDYMNRMGSENIWCEGNGMNPQADLRSEYLLNTSIAGLEKGDAFLFVGTNPRVEAPMVNARIRKAVRAGHAKVASVGPPTDLAYEHQHLGIGPETLIQIAEGRHPFCSTLASAKYPVLIVGAGIFERKDKDAIMAAVDIIVKHAKVIRNEWNGFNVLLLNAAQAGGLDLGFIPGSGSKIGIENAKFVYLLGADDIQVDKISKDAFVVYQGHHGDRSVYRANMILPGVAFSEKEGTYENAEGCTQQTIPAVPTVGDSRDDWKILRALSEVSGVKLPYDTVNALRTRIRAVSPNLFRVDEREPASAWLRELKPEFNSKMSRRPFTNAIDNFYMTDSICRASKTMAQCTATLLSQK
B8LMM8______________MGIGMLAFQAARRSKSLAGRLWAVQQQQQEALGPNGGAWMRAISSSPARGTEASAEKRTPVGGARVEIPKPEEAFEVTVDGHTVKIPKGLTVLQACELAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPMAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFIETKRSVVDKNLGPLVKTVMTRCIQCTRCVRFASEVAGVQDLGILGRGSGEEIGTYVERLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTESIDVTDAVGSNIKIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKRQRLNEPMIRRPDGRLQPVTWHDALEVIAEVTHQVKPEEMVAIAGKLSDVESMMALKDYMNKMGSENIWCEGDGMDPQADLRSDFLLNTSIAGLEKGDAFLFVGTNPRVEAPMVNARIRKAVRAGHAKVASVGPPMDLAYDHQHLGIGPETLIQIAEGRHPFCSTLASAKYPVIIVGAGIFERKDKDAVMAAVDIIAKHAKVIRNEWNGFNVLLLNAAQAGGLDLGLIPGSGSKNGIENAKFVYLLGADDIQVDKISKDAFVVYQGHHGDRSVYRANMILPGVAFSEKEGTYENTEGCTQQTIPAVPTVGDSRDDWKILRALSEISGVKLPYDTVNALRTRIRAVSPNLFRVDEREPASAWIRELKPEFNSKMSPRPFNKAIDNFYMTDSICRASKTMAQCTAALLSEK

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
437			25	75	0.996473
802	90		10		0.90298
1467	15			84	0.999986
1468		15	84		0.999986
1479		75		25	1.0
1497	85			14	0.993533
1618	14		85		0.993533
1680	83		16		0.994512
1801			75	25	0.996473
1825		75		25	0.996473
1998		88		11	0.923564
2642	10		90		0.90298
2643	10		90		0.90298
2644		90	10		0.90298
2646			10	90	0.90298
2648			10	90	0.90298
2649			10	90	0.90298
2650		10		90	0.90298
2731	16		83		0.994512
2734	16		83		0.994512
2735	16			83	0.994512
2736	16		83		0.994512
2795	75		25		0.996473
2827	75		25		0.996473

SSRs (tot: 2)

Start position	End position	Sequence	Length
279	292	GCA GCA GCA GCA GC	14
2675	2687	ATTT ATTT ATTT A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain