SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1121

Length: 1282 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene1121 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF788 domain containing protein	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF788, TMEM208	IPR008506	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G23940.1	Protein of unknown function (DUF788) chr2:10184199-10185097 FORWARD LENGTH=173	64%
RefSeq	Arabidopsis thaliana	NP_565558.1	uncharacterized protein [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002324512.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTF9

Fln msg:

Fln protein: MANQGAKKRKDENKRHINMLLRLIIICNAVYILVRVLILHSSFTWKHVLGLLATSAAYGFPYLQLSNMAQPSYDENGDLFDGGFDMSTGGVCGYLHDVIYITSFVQLGSIVSDKFWYIYLVIPAFAAYKLFDVSKGFFQSSPEEPEDEKTRRKREKMERKASRPKFIKTRSK*

Protein Length: 174

Fln nts: TACCACTGCTTAAGCAGTTTTATCAACTCTTCTTAACGCGGTGGAAAAAAATTGCGGACAGTTCCAAATTACTTACCAAATCATCGCGATATCATAAACAAATTACTTATCAAACCATCATTGGTATCATCATTTTTTTTCAAAAGGTTTGGATTCAGTAGGTGCCGAGGACTTTTATCGTCTGCATTACAAACAAACCAACG_-_ATGGCCAACCAGGGCGCTAAGAAGAGGAAAGATGAGAATAAGCGCCACATAAACATGCTGCTACGCTTAATTATCATCTGCAATGCTGTTTACATCTTGGTGAGGGTGTTGATCTTGCATTCTTCATTCACCTGGAAACATGTTTTAGGTCTGCTTGCAACATCTGCAGCTTATGGATTTCCTTACCTCCAGCTATCTAACATGGCACAACCATCTTATGATGAAAATGGAGATCTTTTCGATGGGGGATTTGATATGAGTACTGGTGGTGTCTGTGGGTATCTACATGATGTAATCTACATTACGAGTTTTGTTCAATTGGGGTCTATTGTCTCTGATAAATTTTGGTATATATATTTAGTGATCCCTGCTTTTGCTGCATATAAACTTTTCGATGTTTCCAAGGGATTCTTCCAGAGCTCCCCGGAGGAGCCAGAGGATGAAAAAACTCGTCGCAAAAGGGAGAAAATGGAGCGGAAGGCTTCAAGACCTAAATTTATTAAGACAAGATCCAAATGA___CTTCTAAATTGCATTAGATCACTAAAAGAAGGGTTCCTGTGGAAATGAGCATCAAAGTGATCACTTATATTAATTTATTGCTTGGTTTGCTCATTTAGGGTGCAATTCAGGGTTTTAAGTTTGATCAAAGAGAAACGTCTGTCCCTTGGAGATCACACTGTCATCTTATCTTAATTCATCCGATAGCATTGCAATCCACTAATCAATTACTGTTCCATGTTTCAACTATGCTATTATATTTCATCGGAAGCATTCCTTCCAATGGCTGCTAAGGTACTGATTACATCATTTTTATGGTGCCTCAATGGTGGTTTTGAATAATTTCGTTTTACAGGGGCACTCCACATATTTATTCGCTAATTCTATTCTCCTTATGGGAGAAATATGTAAAGTTATTTCGCAACATATAAACTCTGGTTCTGTTTTCATGAGAATTATTGTCTGCACTTGGCACTTATGCAGTCTCACATAGCTAGTACTTGAAAGAAAATTCATTCTCTTTGGAATCATTCTATGAAAATTGCTTCTCCAAAATGGATATTGGACCAATTTTAGATAGT

Fln Alignment:

Contig1121___MANQGAKKRKDENKRHINMLLRLIIICNAVYILVRVLILHSSFTWKHVLGLLATSAAYGFPYLQLSNMAQPSYDENGDLFDGGFDMSTGGVCGYLHDVIYITSFVQLGSIVSDKFWYIYLVIPAFAAYKLFDVSKGFFQSSPXXXXXXXXXXXXXXXXXKASRPKFIKTRSK
A9NTF9______________MANQGAKKRKDENKRHITMLLRLIIICNAIYILVRVLILHSSFTWKHVLGLLATSAAYAFPYLQLSNMAQPSYDENGDLLDGGFDMSTGGVCGYLHDVIYITSFVQLGSIISDKFWYIYLVIPAFAAYKLFDVSKGLFQSSPEEPEDEKTRRKREKLERKASRPKFIKTRSK

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
936	60			40	1.0
942		20		80	0.995493
983	85			14	0.993533
1139		16		83	0.994512
1141		16		83	0.994512
1142	16	16		16	0.988986
1143	16		83		0.994512
1144	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain