SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1120

Length: 2100 nt

UniGene Fasta

>sp_v3.0_unigene1120
TCTTTGGATTTTGCTATAAAGTCAGATAGCAACGAAACATTGCAGAGGACATGGAGGAGTCTGGCAATGCTCTGGTATCAGGGCCTGATGGGAGCAAGAGAAGAGTTACATACTTCTACGATGCAGACATTGGTAATTATTACTATGGGCAAGGCCACCCAATGAAGCCACACCGCATGAGAATGGCCCACAACTTGATTGTCCACTATGGCCTCCACCGAGAGGATGGAAGTTTGCAGGCCTCATCTAGCACAGAGCAAGGACATCCGTGCCTTTCATACTGATGATTACATACATTTCTTGAGTAGTGTAGCACCAGACACTCAGCAGGAGCAGCTGAGGCAGTTGAAGAGGTTCAATGTGGGGGAGGACTGCCCTGTGTTTGATGGGCTTTTCAATTTTTGCCAGTCTTCTGCAGGAGGCTCAATTGGGGCAGCCCTTAAACTCAATAGGAAGGATGCAGACATTGCCATCAACTGGGCGGGGGGCCTCCACCATGCCAAGAAGTGCGAGGCGTCGGGTTTCTGCTATGTCAATGATATTGTGCTTGGCATCCTGGAATTGCTAAAGGTCCATCAGCGTGTACTTTATATTGATATTGATATTCATCATGGTGATGGGGTTGAAGAAGCCTTCTACACTACAGACCGTGTGATGACTGTATCTTTTCACAAATTTGGGGATTACTTTCCAGGCACAGGTCATATTAAAGATGTAGGATATGGGAAAGGGAAGTACTATGCCTTGAATGTTCCTTTGAATGATGGAATTGATGATGAGAGCTACAAGCACCTTTTCAGGCCCATTATCCAGAAGGTAATGGAAGTCTATCAGCCAGAAGCAGTTGTTCTACAATGTGGAGCAGACTCACTCTCAGGGGACAGGTTAGGGTGCTTCAATTTGTCAGTCAAGGGACATGCAGATTGTGTTCGTTTTGTTCGGTCATTTAATATACCACTTATGCTGGTTGGTGGTGGTGGTTACACTATTCGTAATGTGGCTCGCTGCTGGTGCTACGAGACTGCTGTTGCTGTAGGTGTTGAACCCCAAGATAAATTGCCTTATAATGAGTATTACGAATATTTTGGGCCAGACTACACCCTCTATGTAGCCCCTAGCAATATGGAGAACCTGAACACAGAAAAAGATTTGGAGAAAATGAGAAACGTGTTGCTAGAACAATTGAGTAAAATACAACATACACCAAGTGTACCCTTTCAGGAAAGGCCCCCTGATACAGAATTTAATGATGAGGAGGAAGAGGACATGGAAAAACGCTCAAAATGCCGTATCTGGGATGGGGAGTACGTTGGTTCAGAATCTGAGGAAGATGGAAAGCCTCCAATATTTGATGCAGATACTTATGAGAGATCTGTTCTCAAGCATGAAAACAAAAGGTTAGTGCCTGTTTCAAATGTTGAACCTCTGAAGAGAATAAAACAAGAGGAAGATGGAGCGGCTGTTTAAGTGCTAGATGATCTTAATTGCACTGCCATTTCCTTCAGATGGTCACTTCTCTCATGTTCATTCAATCATTTTAATTTTCATTCTAATATGGTTCATGCCCTATATGAAGAAAGAAGGCCTGTGAATTTCTTTTAATTTTGATCCTGGCTTTAAGGCTCATTTTAGAGAAGGAACTTTCATGCACTACATGGCTTAAAGATATTGATTTTGTGCTGTGAAAGCAGAACGAAAATGAAAATGGCACTGCCACCCGGACATTTGTCCAATCTGCATGAGCACACTGAGAGGGAAAAGCTGAAGCAGAAGCAGCTTTGACCAGTATTTAGTGTTTTGTATACAATTCTTGTTTCAGTGAATGCTGCTCCCCCTTCTCGATTACCAACCTGTACTTAAACATTGTTGCTATCAGAAGAGTATTATTTTTCAAGGAATGCAAGATAAATGTATAAAATGGGGTTATATGAAAGAGCCTTTTTCTGCTTCTGCTTTATGTTACAAACGGATGGAAATTGTTCCGTATTACAGTGGATATTGTAGATACTGAACTTGTTTTAAATTATAATGACGGATCTGAATATTGTAGTTTTCATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCTCTGGGTTG

Ace file of the UniGene sp_v3.0_unigene1120

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Histone deacetylase (Fragment) n=2 Tax=Malpighiales RepID=B9IEX4_POPTR	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Histone deacetylase	-	-	-

Source	Gene names
Sma3	HDA908; POPTRDRAFT_252260;

Source	InterPros	Term	Type	e value	Identity
Sma3	Histone deacetylase superfamily	IPR000286	-	0.0	-
Sma3	Histone deacetylase	IPR003084	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G63110.1	HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 histone deacetylase 6 chr5:25315834-25318227 REVERSE LENGTH=471	75%
RefSeq	Arabidopsis thaliana	NP_201116.1	histone deacetylase 6 [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002322192.1	histone deacetylase, partial [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LP03

Fln msg: your sequence is longer than subject: 420 - 102

Fln protein: MASTERMEVCRPHLAQSKDIRAFHTDDYIHFLSSVAPDTQQEQLRQLKRFNVGEDCPVFDGLFNFCQSSAGGSIGAALKLNRKDADIAINWAGGLHHAKKCEASGFCYVNDIVLGILELLKVHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGHIKDVGYGKGKYYALNVPLNDGIDDESYKHLFRPIIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCVRFVRSFNIPLMLVGGGGYTIRNVARCWCYETAVAVGVEPQDKLPYNEYYEYFGPDYTLYVAPSNMENLNTEKDLEKMRNVLLEQLSKIQHTPSVPFQERPPDTEFNDEEEEDMEKRSKCRIWDGEYVGSESEEDGKPPIFDADTYERSVLKHENKRLVPVSNVEPLKRIKQEEDGAAV*

Protein Length: 421

Fln nts: TCTTTGGATTTTGCTATAAAGTCAGATAGCAACGAAACATTGCAGAGGACATGGAGGAGTCTGGCAATGCTCTGGTATCAGGGCCTGATGGGAGCAAGAGAAGAGTTACATACTTCTACGATGCAGACATTGGTAATTATTACTATGGGCAAGGCCACCCAATGAAGCCACACCGCATGAGAATGGCCCACAACTTGATTGTCCACT_-_ATGGCCTCCACCGAGAGGATGGAAGTTTGCAGGCCTCATCTAGCACAGAGCAAGGACATCCGTGCCTTTCATACTGATGATTACATACATTTCTTGAGTAGTGTAGCACCAGACACTCAGCAGGAGCAGCTGAGGCAGTTGAAGAGGTTCAATGTGGGGGAGGACTGCCCTGTGTTTGATGGGCTTTTCAATTTTTGCCAGTCTTCTGCAGGAGGCTCAATTGGGGCAGCCCTTAAACTCAATAGGAAGGATGCAGACATTGCCATCAACTGGGCGGGGGGCCTCCACCATGCCAAGAAGTGCGAGGCGTCGGGTTTCTGCTATGTCAATGATATTGTGCTTGGCATCCTGGAATTGCTAAAGGTCCATCAGCGTGTACTTTATATTGATATTGATATTCATCATGGTGATGGGGTTGAAGAAGCCTTCTACACTACAGACCGTGTGATGACTGTATCTTTTCACAAATTTGGGGATTACTTTCCAGGCACAGGTCATATTAAAGATGTAGGATATGGGAAAGGGAAGTACTATGCCTTGAATGTTCCTTTGAATGATGGAATTGATGATGAGAGCTACAAGCACCTTTTCAGGCCCATTATCCAGAAGGTAATGGAAGTCTATCAGCCAGAAGCAGTTGTTCTACAATGTGGAGCAGACTCACTCTCAGGGGACAGGTTAGGGTGCTTCAATTTGTCAGTCAAGGGACATGCAGATTGTGTTCGTTTTGTTCGGTCATTTAATATACCACTTATGCTGGTTGGTGGTGGTGGTTACACTATTCGTAATGTGGCTCGCTGCTGGTGCTACGAGACTGCTGTTGCTGTAGGTGTTGAACCCCAAGATAAATTGCCTTATAATGAGTATTACGAATATTTTGGGCCAGACTACACCCTCTATGTAGCCCCTAGCAATATGGAGAACCTGAACACAGAAAAAGATTTGGAGAAAATGAGAAACGTGTTGCTAGAACAATTGAGTAAAATACAACATACACCAAGTGTACCCTTTCAGGAAAGGCCCCCTGATACAGAATTTAATGATGAGGAGGAAGAGGACATGGAAAAACGCTCAAAATGCCGTATCTGGGATGGGGAGTACGTTGGTTCAGAATCTGAGGAAGATGGAAAGCCTCCAATATTTGATGCAGATACTTATGAGAGATCTGTTCTCAAGCATGAAAACAAAAGGTTAGTGCCTGTTTCAAATGTTGAACCTCTGAAGAGAATAAAACAAGAGGAAGATGGAGCGGCTGTTTAA___GTGCTAGATGATCTTAATTGCACTGCCATTTCCTTCAGATGGTCACTTCTCTCATGTTCATTCAATCATTTTAATTTTCATTCTAATATGGTTCATGCCCTATATGAAGAAAGAAGGCCTGTGAATTTCTTTTAATTTTGATCCTGGCTTTAAGGCTCATTTTAGAGAAGGAACTTTCATGCACTACATGGCTTAAAGATATTGATTTTGTGCTGTGAAAGCAGAACGAAAATGAAAATGGCACTGCCACCCGGACATTTGTCCAATCTGCATGAGCACACTGAGAGGGAAAAGCTGAAGCAGAAGCAGCTTTGACCAGTATTTAGTGTTTTGTATACAATTCTTGTTTCAGTGAATGCTGCTCCCCCTTCTCGATTACCAACCTGTACTTAAACATTGTTGCTATCAGAAGAGTATTATTTTTCAAGGAATGCAAGATAAATGTATAAAATGGGGTTATATGAAAGAGCCTTTTTCTGCTTCTGCTTTATGTTACAAACGGATGGAAATTGTTCCGTATTACAGTGGATATTGTAGATACTGAACTTGTTTTAAATTATAATGACGGATCTGAATATTGTAGTTTTCATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCTCTGGGTTG

Fln Alignment:

Contig1120___MRNVLLEQLSKIQHTPSVPFQERPPXXXXXXXXXXXXXKRSKCRIWDGEYVGSESEEDGKPPIFDADTYERSVLKHENKRLVPVSNVEPLKRIKQEEDGAAV
B8LP03______________MRNVLLEQLSRIQHIPSVPFQERPPDTEFHDEEEEDMEKRSKCRIWDGEYFGSESEEDGKPPRCDADTYVRSVLKHENKRLVPVSNVEPLKRIKQEEDGEAV

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1366		50		50	1.0
1372	87		12		0.992554
1471	25		75		0.996473
1488			50	50	1.0
1492	20			80	0.995493
1958		12		87	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
969	981	TGG TGG TGG TGG T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain