SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1118

Length: 2190 nt

UniGene Fasta

>sp_v3.0_unigene1118
TAAAAACCAATATCCCATGATTTTTAACTCGACCGGATTTGACTTTCCTGTTTGTCTTCATCTGCAATACCGTCCTCGGCTTTGCACCGCATAGTTTCGAACAGTGAGTACTGGACATGGAGGCGGCGTTCTAAGTTACTGGAAGGTTTGAACTGTCAAATTGGTAATTGTATTTGGTGATATGAGGAGGACGATCCGATCCGGCCAGTGCACACGGCTAGTAGACCAGTCTGCAGGCAGAGTACCTCAAAAATTTTCAGAGATTTTTGGGGTATTATTTTTAGGGTAGCATTGGCAATTTCATTGGGCTTCGTCCTTCTTTCAGAGACACTGACTTAGGCAAGATGTATGCGAGGTGCATATTGAAGGGTAAATACAGTAGATTGACCCTTCGAAGGAAGCTATTCACTTCTGTAAAATCTATCAATGCTCTCTATGGACTTCCAGACAGCAGAAATTCACGCGGACAGAGTGATGGAGCAAGTCAGTTCAAGATTCAACAAGTTTTCAGGTGTAAAGAATACATTTGGCTAGATAGGCACAGGTTTCATGATGTTGGATTTCAAGCTCAGCATAAAGGAAGCATCACAAATGAGGAGCGAGTTGATCCTTTTTCCCTTGTAGCTGATGAATTATCACTCTTGGCTAGTAGGCTACGATCAATGATTCTTACTGAGATTCCTAAGCTGGGAACAGCTGCAGAGTATTTCTTCAAGTTGGGAGTAGAGGGCAAAAGATTTCGTCCCATGGTCTTGTTGTTAATGGCATCATCCCTGACCATTGGAATTCCTGAGGTAGCAGCAGACTGCTTACGTAAAGGCTTGGATGAGGAGCAACGCTTGCGGCAGCAGCGCATTGCAGAGATCACAGAGATGATTCATGTGGCAAGCCTTCTTCATGATGATGTGTTGGATGACGCAGATACCCGTCGAGGTGTTGGCTCGTTGAACTTTGTAATGGGAAATAAGCTTGCTGTACTGGCTGGTGATTTCTTGCTTTCAAGGGCATCTGTGGCACTTGCCTCATTGAAGAATACAGAGGTGGTAGAATTATTGTCGAAGGTGTTGGAACATCTTGTCACCGGTGAGATAATGCAAATGACAAATACAACTGAACAGCGCTGTAGCATGGAATATTATATGCAGAAGACTTTTTACAAAACAGCATCATTGATGGCTAACAGTTGCAAGGCCATTGCTCTTATTGCCGGTCAGCCAGCAGAAGTTTGCATGCTTGCCTATGATTATGGAAGAAATTTGGGATTAGCATATCAGCTAGTTGACGATGTACTTGACTTTACTGGCACAACAGCTTCACTTGGCAAAGGGCCTCTTTCTGACATACGCCAGGGGATTGTTACTGCTCCAATATTGTTTGCTTTGGAAGAGTTTCCACAGTTGCATGATGTAATCAGCCGAAAGTTCAAAAAGCCTGGAGATATTGATCTTGCCCTTGAATTTCTTGGAAAAAGTGATGGAATAAGAAAGGCAAAACAACTTGCAGCTCAGCATGCTGGTTTTGCTACGTTTTCTGTTGAATCTTTCCCACCATCTGAATCAGAGTACGTTAAATTATGTAGGAAAGCATTAATTGATCTCTCTGAAAAAGTGATCACCAGAACAAAGTAATGCAGGCCTCATATTAAGCAGGAAAAATACAGTAAAGAAATATGCAACTTGTTTTGATAAAGCCTTTTAACATTGCTTTTGTTCTTCTAATAAACTTTTTAGGGCATTATTTGGATAATTTGTGTAGCTTCCTTGGTGTAGGAAAGCTTCATCATCATTCTTTTGATTTGATTCATTAAAGCCTTTTATGCCTCCATTGGAGATAATTCACCAATTAGGTGTACTGTATATGTATGTCTTTTGCATCGGCACATGAACTCGAATCAGCTTCAGCTGGTGACCAGGGTGAACCTTCGTGTATATTTATTCAAGCCTCAGCAGAATAAATTCTACTGAATTCAGCCTTATGTAATCTGTGGTAATGGAATTTCAATTCATTAATTTTGAAGATGAAAATGAGCCTTGGGAGATTAACAGGAAAAATCATGATTGCACATAACTGCTTTGAAAATTATTGATTCAAAATGCTCACAAATGAAGGTATATATAATATCGAAGGGTATTTAAAATATAGTGTAGATACAGAACACTTTACGGACCTTTAGTGTGTTTTCAGCTAAAC

Ace file of the UniGene sp_v3.0_unigene1118

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Geranyl diphosphate synthase 3 n=1 Tax=Picea abies RepID=B1A9K7_PICAB	-	-	87%
FL-Next	tr=Geranyl diphosphate synthase 3; Picea abies (Norway spruce) (Picea excelsa).	-	-	93%
Sma3	Geranyl diphosphate synthase 3	-	-	-

Source	Gene names
Sma3	IDS3;

Source	GOs	Term	Type	e value	Identity
Sma3	isoprenoid biosynthetic process	GO:0008299	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Polyprenyl synthetase	IPR000092	-	-
Sma3	Polyprenyl synthetase-related	IPR017446	-	-
Sma3	Terpenoid synthase	IPR008949	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G34630.2	GPPS, GPS1 geranyl diphosphate synthase 1 chr2:14578689-14581632 FORWARD LENGTH=422	62%
RefSeq	Arabidopsis thaliana	NP_001031483.1	geranyl diphosphate synthase 1 [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002326151.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B1A9K7

Fln msg:

Fln protein: MYARCILKGKYSRLTLRRKLFTSVKSINALYGLPDSRNSRGQSDGASQFKIQQVFRCKEYIWLDRHRFHDVGFQAQHKGSITNEERVDPFSLVADELSLLASRLRSMILTEIPKLGTAAEYFFKLGVEGKRFRPMVLLLMASSLTIGIPEVAADCLRKGLDEEQRLRQQRIAEITEMIHVASLLHDDVLDDADTRRGVGSLNFVMGNKLAVLAGDFLLSRASVALASLKNTEVVELLSKVLEHLVTGEIMQMTNTTEQRCSMEYYMQKTFYKTASLMANSCKAIALIAGQPAEVCMLAYDYGRNLGLAYQLVDDVLDFTGTTASLGKGPLSDIRQGIVTAPILFALEEFPQLHDVISRKFKKPGDIDLALEFLGKSDGIRKAKQLAAQHAGFATFSVESFPPSESEYVKLCRKALIDLSEKVITRTK*

Protein Length: 429

Fln nts: TAAAAACCAATATCCCATGATTTTTAACTCGACCGGATTTGACTTTCCTGTTTGTCTTCATCTGCAATACCGTCCTCGGCTTTGCACCGCATAGTTTCGAACAGTGAGTACTGGACATGGAGGCGGCGTTCTAAGTTACTGGAAGGTTTGAACTGTCAAATTGGTAATTGTATTTGGTGATATGAGGAGGACGATCCGATCCGGCCAGTGCACACGGCTAGTAGACCAGTCTGCAGGCAGAGTACCTCAAAAATTTTCAGAGATTTTTGGGGTATTATTTTTAGGGTAGCATTGGCAATTTCATTGGGCTTCGTCCTTCTTTCAGAGACACTGACTTAGGCAAG_-_ATGTATGCGAGGTGCATATTGAAGGGTAAATACAGTAGATTGACCCTTCGAAGGAAGCTATTCACTTCTGTAAAATCTATCAATGCTCTCTATGGACTTCCAGACAGCAGAAATTCACGCGGACAGAGTGATGGAGCAAGTCAGTTCAAGATTCAACAAGTTTTCAGGTGTAAAGAATACATTTGGCTAGATAGGCACAGGTTTCATGATGTTGGATTTCAAGCTCAGCATAAAGGAAGCATCACAAATGAGGAGCGAGTTGATCCTTTTTCCCTTGTAGCTGATGAATTATCACTCTTGGCTAGTAGGCTACGATCAATGATTCTTACTGAGATTCCTAAGCTGGGAACAGCTGCAGAGTATTTCTTCAAGTTGGGAGTAGAGGGCAAAAGATTTCGTCCCATGGTCTTGTTGTTAATGGCATCATCCCTGACCATTGGAATTCCTGAGGTAGCAGCAGACTGCTTACGTAAAGGCTTGGATGAGGAGCAACGCTTGCGGCAGCAGCGCATTGCAGAGATCACAGAGATGATTCATGTGGCAAGCCTTCTTCATGATGATGTGTTGGATGACGCAGATACCCGTCGAGGTGTTGGCTCGTTGAACTTTGTAATGGGAAATAAGCTTGCTGTACTGGCTGGTGATTTCTTGCTTTCAAGGGCATCTGTGGCACTTGCCTCATTGAAGAATACAGAGGTGGTAGAATTATTGTCGAAGGTGTTGGAACATCTTGTCACCGGTGAGATAATGCAAATGACAAATACAACTGAACAGCGCTGTAGCATGGAATATTATATGCAGAAGACTTTTTACAAAACAGCATCATTGATGGCTAACAGTTGCAAGGCCATTGCTCTTATTGCCGGTCAGCCAGCAGAAGTTTGCATGCTTGCCTATGATTATGGAAGAAATTTGGGATTAGCATATCAGCTAGTTGACGATGTACTTGACTTTACTGGCACAACAGCTTCACTTGGCAAAGGGCCTCTTTCTGACATACGCCAGGGGATTGTTACTGCTCCAATATTGTTTGCTTTGGAAGAGTTTCCACAGTTGCATGATGTAATCAGCCGAAAGTTCAAAAAGCCTGGAGATATTGATCTTGCCCTTGAATTTCTTGGAAAAAGTGATGGAATAAGAAAGGCAAAACAACTTGCAGCTCAGCATGCTGGTTTTGCTACGTTTTCTGTTGAATCTTTCCCACCATCTGAATCAGAGTACGTTAAATTATGTAGGAAAGCATTAATTGATCTCTCTGAAAAAGTGATCACCAGAACAAAGTAA___TGCAGGCCTCATATTAAGCAGGAAAAATACAGTAAAGAAATATGCAACTTGTTTTGATAAAGCCTTTTAACATTGCTTTTGTTCTTCTAATAAACTTTTTAGGGCATTATTTGGATAATTTGTGTAGCTTCCTTGGTGTAGGAAAGCTTCATCATCATTCTTTTGATTTGATTCATTAAAGCCTTTTATGCCTCCATTGGAGATAATTCACCAATTAGGTGTACTGTATATGTATGTCTTTTGCATCGGCACATGAACTCGAATCAGCTTCAGCTGGTGACCAGGGTGAACCTTCGTGTATATTTATTCAAGCCTCAGCAGAATAAATTCTACTGAATTCAGCCTTATGTAATCTGTGGTAATGGAATTTCAATTCATTAATTTTGAAGATGAAAATGAGCCTTGGGAGATTAACAGGAAAAATCATGATTGCACATAACTGCTTTGAAAATTATTGATTCAAAATGCTCACAAATGAAGGTATATATAATATCGAAGGGTATTTAAAATATAGTGTAGATACAGAACACTTTACGGACCTTTAGTGTGTTTTCAGCTAAAC

Fln Alignment:

Contig1118___MYARCILKGKYSRLTLRRKLFTSVKSINALYGLPDSRNSRGQSDGASQFKIQQVFRCKEYIWLDRHRFHDVGFQAQHKGSITNEERVDPFSLVADELSLLASRLRSMILTEIPKLGTAAEYFFKLGVEGKRFRPMVLLLMASSLTIGIPEVAADCLRKGLDEEQRLRQQRIAEITEMIHVASLLHDDVLDDADTRRGVGSLNFVMGNKLAVLAGDFXXXXXXXXXXXXKNTEVVELLSKVLEHLVTGEIMQMTNTTEQRCSMEYYMQKTFYKTASLMANSCKAIALIAGQPAEVCMLAYDYGRNLGLAYQLVDDVLDFTGTTASLGKGPLSDIRQGIVTAPILFALEEFPQLHDVISRKFKKPGDIDLALEFLGKSDGIRKAKQLAAQHAGFATXXXXXXXXXXXXYVKLCRKALIDLSEKVITRTK
B1A9K7______________MYTRCILRDKYSRFNLRRKFFTSAKSINALNGLPDSGNPRGESNGISQFEIQQVFRCKEYIWIDRHKFHDVGFQAHHKGSITDEEQVDPFSLVADELSILANRLRSMILTEIPKLGTAAEYFFKLGVEGKRFRPMVLLLMASSLTIGIPEVAADCLRKGLDEEQRLRQQRIAEITEMIHVASLLHDDVLDDADTRRGVGSLNFVMGNKLAVLAGDFLLSRASVALASLKNTEVVELLSKVLEHLVTGEIMQMTNTNEQRCSMEYYMQKTFYKTASLMANSCKAIALIAGQPAEVCMLAYDYGRNLGLAYQLLDDVLDFTGTTASLGKGSLSDIRQGIVTAPILFALEEFPQLHDVINRKFKKPGDIDLALEFLGKSDGIRKAKQLAAQHAGLAAFSVESFPPSESEYVKLCRKALIDLSEKVITRTR

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1129	83		16		0.994512
1635	76		23		1.0
1696		16		83	0.994512
1935			11	88	0.923564
1936			11	88	0.923564
1941	88		11		0.923564
2022		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain