SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1107

Length: 1507 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1107

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutathione S-transferase family protein [Arabidopsis thaliana] dbj\|BAB08448.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM20411.1\| putative protein [Arabidopsis thaliana] gb\|AAM65782.1\| unknown [Arabidopsis thaliana] gb\|AAN65132.1\| putative pro	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	protein disulfide oxidoreductase activity	GO:0015035	Molecular Function	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutaredoxin active site	IPR011767	-	-
Sma3	Glutaredoxin	IPR002109	-	-
Sma3		IPR012335	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G42150.1	Glutathione S-transferase family protein chr5:16846247-16847909 FORWARD LENGTH=315	71%
RefSeq	Arabidopsis thaliana	NP_199030.1	Glutathione S-transferase family protein [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002322108.1	predicted protein, partial [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0L0

Fln msg:

Fln protein: MRVQGLGSVLRKTTIRSGILASRVQNGLTDSSLSSSPWKFRMLSSLPATNLHNGGKRDDDKWAGRGPLVAAGAISFSFAASSFTTVVAKERPSSEFIPKDLVLYQYEACPFCNKVKAYLDYHHLPYKIVEVNPISKKEIKWSDYKKVPILMVDGKQLNDSSAIINQLDSQIHPNKGRLPTDAEEEEKWRRWVDEHLVHVLSPNIYRSVSEALESFDYITTQGNFTTLERLTGKYVGAAAMYFVSKKLKKKHNITDERASLYEAANTWVEALNNRLFMGGSKPNLADLAVFGVLRPIRYLQSGRDMVANTNIGAWYSRMEEAVGETSGVKD*

Protein Length: 332

Fln nts: GAAAGTAAAACAGCAAACCTTGCATATAAATTTCGAAGGCCTAGCGCTTTAATTATTTTTGCCCAAATAATCTTTGGGGACA_-_ATGAGGGTTCAGGGTTTAGGATCTGTTCTCAGAAAAACCACCATTCGGTCTGGCATACTCGCCTCGCGAGTACAGAATGGACTGACAGATTCATCCCTTTCATCGTCTCCATGGAAATTTCGAATGCTCTCCTCGCTACCTGCGACAAATTTGCACAATGGTGGGAAAAGAGATGACGATAAATGGGCTGGGAGGGGCCCTCTCGTGGCTGCAGGGGCGATCTCCTTCTCGTTTGCAGCTTCCTCTTTCACTACTGTGGTTGCCAAGGAGCGTCCATCCAGTGAATTCATACCCAAGGATCTCGTGCTTTACCAGTACGAGGCGTGTCCCTTCTGCAATAAGGTCAAAGCATATCTAGATTACCATCATTTACCATACAAAATTGTCGAGGTTAATCCCATCAGTAAGAAGGAAATTAAATGGTCTGATTACAAGAAGGTGCCAATATTGATGGTGGATGGAAAGCAACTAAATGATTCATCAGCAATAATTAACCAGTTGGATAGTCAAATCCATCCTAACAAAGGAAGATTGCCAACAGATGCAGAAGAGGAAGAAAAATGGCGCAGGTGGGTTGATGAACACCTGGTACATGTATTGTCACCCAATATCTACCGGAGTGTTTCAGAGGCCCTTGAGTCCTTCGATTATATTACTACGCAAGGTAACTTCACAACTCTGGAGAGATTGACTGGAAAATATGTAGGAGCTGCAGCTATGTATTTTGTCTCAAAAAAACTTAAAAAGAAACATAATATCACAGATGAGCGTGCCTCACTATATGAAGCTGCAAATACTTGGGTGGAAGCTCTTAATAATAGGTTGTTTATGGGTGGTTCTAAACCCAATTTGGCAGATCTAGCTGTCTTTGGAGTATTAAGGCCCATTCGTTATTTGCAATCTGGAAGGGATATGGTAGCAAACACAAACATTGGTGCATGGTACTCAAGAATGGAAGAGGCAGTGGGTGAAACTTCAGGAGTGAAGGATTAA___ATATGTTTTCCTATTTGAGTAGCAGCCAGCATTGAACGACGACACCACCATTTATCCCATTATTAGACTATCAATGATAATTTAGTCAGTCTAAAATCGTGAATGCTTGTATTGTTCATTGTTGTTAAGCCTCAACATTCGTCCAGTTTTGGCTTAGAGAATAGGCAATAAGTAGGTTGATTATTCAGAGATGGCATGTGTTCTTTTAAGTTGTATCATTTTTGGTGGGAACAATGAAGATGGAAGGTATTCTTTGGTTGGTAGCCCTTTGCCTAGTTGTTCCTAGGGTTTTGTTCGTTATGGCTACCTTTGTTTCTGGTGGTTGTAATCTTACAAGTTCTTTTGTAACTCGACGCATTTTAAATAAAATTAGGATTGTAATTTACAACCCTAACTCATGCTTTGCTAAAGAGGAAACCGTTTCTTCCCTCT

Fln Alignment:

Contig1107___MRVQGLGSVLRKTTIRSGILASRVQNGLTDSSLSSSPWKFRMLSSLPATNLHNGGKRDDDKWAGRGPLXXXXXXXXXXXXXXXXXXXXKERPSSEFIPKDLVLYQYEACPFCNKVKAYLDYHHLPYKIVEVNPISKKEIKWSDYKKVPILMVDGKQLNDSSAIINQLDSQIHPNKGRLPTDAEEEEKWRRWVDEHLVHVLSPNIYRSVSEALESFDYITTQGNFTTLERLTGKYVGAAAMYFVSKKLKKKHNITDERASLYEAANTWVEALNNRLFMGGSKPNLADLAVFGVLRPIRYLQSGRDMVANTNIGAWYSRMEEAVGETSGVKD
A9P0L0______________MRVQGLGSVLRKTTSRSGIFASRVQNGLADSSLSSSPWKYRMLSSLPSTSFNDGGKRDDEKWARKGPFMAAGAISFSFAASSFTTAVAKERPSSEFIPKDLVLYQYEACPFCNKVKAFLDYHDLTYKIVEVNPLGKKEIKWSDYKKVPILMVDGKQLNDSSAIIDKLDSQIHPNKGRLPTDAEEEEKWRRWVDEHLVHILSPNIYRSASEALESFDYITTHGNFSTLERLTGKYVGAAAMYFVSKKLKKKHNITDERASLYEAANAWVEALNNRLFMGGSKPNLADLAVFGVLRPIRYLQSGRDMVANTNIGAWYSRMEDAVGGTSGIKD

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
139	80		20		0.995493
148			80	20	0.995493
238		80		20	0.995493
457	88		11		0.923564
628	90		10		0.90298
709	81	18			1.0
880	16			83	0.994512
980		88	11		0.923564
1430		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain