SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1095

Length: 556 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene1095
TGGTGGCAGTATCGCCCAAAACTACCCTATACATATTTTCTTCAGAAAGTTGAATGCTTAGAGGTTAAAGCGGCAGTGTTAAGCGAGGATCTGAAGACAATTTATGTGACAATGAAAGAGGGTTTCCCCTCGGAATATATTGTTGATGTACCTGTGGATCCTTACCTTTTTGAGTTACTTACAAGTTGTGGCGTGGAGGTGGACATTCTACAGAAAACTCGTCTTTACTACATTCTACGATCATTTGCTGTTTTAGCTCCAGGCATTTTCTTACTTTGGTGTATTCAGCGTGTGTTGTATACTATCAACACAGTGAATAAGAACATGCTATTTGACACATTGCAATCAAATAATGAGATCATGATTTTGCCAGATGAAGCTGAAGATGGAGCAGCTTCAGGATACAGTGATGTTGTTTTGGGAGGGGATGCATGGGATCTTATTGATGAGATAATGATCTATATGAAGAATCCCTTAAAATATTACAAGAAAAGGGCGAAATTTCCTAGGGGTATCTTGATAAGTGGGCCACCTGGTACAGGGAAGACTCTTCTTG

Ace file of the UniGene sp_v3.0_unigene1095 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cell division protein ftsH, putative n=1 Tax=Ricinus communis RepID=B9RHY7_RICCO	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%

Source	Gene names
Sma3	At1g79560; FTSH12; GSVIVT00002062001; MA4_112I10.66; PHYPADRAFT_73559; RCOM_1574610;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	metalloendopeptidase activity	GO:0004222	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M41	IPR000642	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G79560.1	EMB156, EMB36, EMB1047, FTSH12 FTSH protease 12 chr1:29926976-29932308 FORWARD LENGTH=1008	0.0	55%
RefSeq	Arabidopsis thaliana	NP_565212.1	cell division protease ftsH-12 [Arabidopsis thaliana]	0.0	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL95

Fln msg: Distance to subject end: 468 aas, your sequence is shorter than subject: 185 - 1036

Fln protein: WWQYRPKLPYTYFLQKVECLEVKAAVLSEDLKTIYVTMKEGFPSEYIVDVPVDPYLFELLTSCGVEVDILQKTRLYYILRSFAVLAPGIFLLWCIQRVLYTINTVNKNMLFDTLQSNNEIMILPDEAEDGAASGYSDVVLGGDAWDLIDEIMIYMKNPLKYYKKRAKFPRGILISGPPGTGKTLL

Protein Length: 186

Fln nts: TGGTGGCAGTATCGCCCAAAACTACCCTATACATATTTTCTTCAGAAAGTTGAATGCTTAGAGGTTAAAGCGGCAGTGTTAAGCGAGGATCTGAAGACAATTTATGTGACAATGAAAGAGGGTTTCCCCTCGGAATATATTGTTGATGTACCTGTGGATCCTTACCTTTTTGAGTTACTTACAAGTTGTGGCGTGGAGGTGGACATTCTACAGAAAACTCGTCTTTACTACATTCTACGATCATTTGCTGTTTTAGCTCCAGGCATTTTCTTACTTTGGTGTATTCAGCGTGTGTTGTATACTATCAACACAGTGAATAAGAACATGCTATTTGACACATTGCAATCAAATAATGAGATCATGATTTTGCCAGATGAAGCTGAAGATGGAGCAGCTTCAGGATACAGTGATGTTGTTTTGGGAGGGGATGCATGGGATCTTATTGATGAGATAATGATCTATATGAAGAATCCCTTAAAATATTACAAGAAAAGGGCGAAATTTCCTAGGGGTATCTTGATAAGTGGGCCACCTGGTACAGGGAAGACTCTTCTTG

Fln Alignment:

Contig1095___WWQYRPKLPYTYFLQKVECLEVKAAVLSEDLKTIYVTMKEGFPSEYIVDVPVDPYLFELLTSCGVEVDILQKTRLYYILRSFAVLAPGIFLLWCIQRVLYTINTVNKNMLFDTLQSNNEIMILPDEAEDGAASGYSDVVLGGDAWDLIDEIMIYMKNPLKYYKKRAKFPRGILISGPPGTGKTLL
B8LL95______________WWQYRPKLPYTYFLQKVEFLEVKAVVFSEDLKTIYVTMKEGFPSEYMVDIPVDPYLFELLTRCGVEVEILHKTHLHYILRAFAVLAPGFFLLWCIERALYTMRIVNKNMLVDIAKSNNEIMILPGEGEDAAVSGYSDVVLGGDVWDIINEIMIYMKNPLQYYKKRVKLPRGILLSGPPGTGKTLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain