SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1070

Length: 1619 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1070

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome regulatory particle non-ATPase subunit 12 [Camellia sinensis]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	26S proteasome non-ATPase regulatory subunit Rpn12	IPR006746	-	0.0	-
Sma3	SAC3/GANP/Nin1/mts3/eIF-3 p25	IPR005062	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G64520.1	RPN12a regulatory particle non-ATPase 12A chr1:23956459-23958120 FORWARD LENGTH=267	76%
RefSeq	Arabidopsis thaliana	NP_176633.1	26S proteasome non-ATPase regulatory subunit RPN12A [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002303668.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPE5

Fln msg:

Fln protein: MEGTLSDVAQVFDRFKAAYTRNDLSTCSTLLSQLKVMLTGFPSLPPLYCESPAAIHELTLARDIFEHAVVLSVKTEDQDAFERDFLQLKPYYTDTRDLIPPSAQEYPILGLNLLRLLVQNRIAEFHTELELLSPEALENPCIKHAVELEQSFMEGAYNRVLSARQAVPHETYVYFMDLLAKTVRDEIAGCSEKAYDYLSLQDAKQILMFTSNLELEEYVSEEHPEWEIRNGSVYFQKAKESAPSKEIPSLQLINQTLGYARELERIV*

Protein Length: 269

Fln nts: TACCACTGCTTAAGCAGTGGTTCAACGCAGAGTACGCGGGGGCCGTGGGTGCTTTAACCTTTCCGTAACTATTTTCCAGCTGAACCTCTTTTTTATTCTGTTTTGCCCTTTGGCTTTTTCTTGCAGCGAAAGTCTTCTTCGTGACTAGTTGCAGGGTTTGAAGGTGTCGAAATAGCGGATTATCGTCGTTTCAAAGAAAGGAAAGCC_-_ATGGAAGGCACGCTCTCGGATGTAGCTCAAGTATTCGATCGCTTCAAAGCCGCTTATACCAGAAATGATCTGTCAACATGTTCAACTTTACTGTCTCAACTGAAGGTTATGTTGACAGGATTTCCAAGCCTCCCTCCCTTGTACTGTGAATCACCTGCAGCGATTCATGAACTGACGCTAGCAAGGGATATTTTTGAGCATGCTGTTGTTCTCAGTGTCAAAACTGAAGATCAAGATGCCTTTGAGAGGGACTTCTTGCAGCTGAAGCCATATTACACGGATACAAGAGATCTTATTCCACCATCTGCTCAGGAATATCCGATCCTGGGGCTTAATTTACTGCGTCTTCTGGTGCAAAATAGAATTGCAGAATTTCACACAGAGCTGGAGCTCCTTTCACCTGAGGCACTTGAGAATCCATGCATTAAGCATGCTGTCGAATTAGAGCAATCATTCATGGAAGGTGCCTATAATCGTGTTCTCAGTGCTCGGCAGGCAGTCCCGCATGAAACTTATGTTTATTTCATGGACCTTCTTGCAAAAACTGTCAGAGATGAAATCGCAGGCTGCAGTGAGAAGGCATATGATTATTTATCACTACAGGATGCTAAGCAAATCTTGATGTTCACCTCTAATTTGGAATTAGAGGAATACGTCTCTGAGGAGCATCCGGAGTGGGAGATAAGGAATGGCTCTGTGTATTTCCAAAAAGCGAAAGAGTCTGCTCCAAGTAAAGAGATTCCTTCATTGCAACTCATTAATCAAACACTGGGGTATGCAAGGGAATTGGAACGCATTGTGTAG___AGAGACAGGAATGGTTCTTAGCTTGGGTTTTATCTTTCTCCCTGAGAAATTTGTACCTGAACTTGTGGTTGGGGTCAAAATGAAGTTCTCATTTTGATTCTAAAATATTTTTAATTTTCCAATGCCAGCATCATGTAACCATTTAAGGAATATTTCTTCCTCGCTAATGAGTTAGATTTTGTATTTCAAGCTGGCTAATGATGTTAATTATTTGAGGGGCATAAATTTTGTTCTGCTGATTCATAAGAGAAATTGTGAAAAAGAGTTTGGCTTTTTGCGCTTTAGATCTTTTTCCTCTTCTAGAGTAAAGCAGAATTGATATTTTGGATGGTCAGTGTACTGCTGGAATGCTGTCAATTGCTGTGGTCTCTGGCTTTGATTTATTCAAATACTTTTGCTGTAGAGTTACAGATGAATTCACCCTTGATTAATAACTTTTGTATTTCAATTTTCCAAATTTATCTTTGGTCCAAAATGGCCTTTGCTTACTTTTCTTGTTGAAATAACAAACAGGCTGTGTGTCTGATATACATCACTGCTGTAAGTTTGAAGCATTGTCACCGCTTCCTGTTGGACGTTACCTTTTCTAACAAATGTATTTCCATCTT

Fln Alignment:

Contig1070___MEGTLSDVAQVFDRFKAAYTRNDLSTCSTLLSQLKVMLTGFPSLPPLYCESPAAIHELTLARDIFEHAVVLSVKTEDQDAFERDFLQLKPYYTDTRDLIPPSAQEYPIXXXXXXXXXVQNRIAEFHTELELLSPEALENPCIKHAVELEQSFMEGAYNRVLSARQAVPHETYVYFMDLLAKTVRDEIAGCSEKAYDYLSLQDAKQILMFTSNLELEEYVSEEHPEWEIRNGSVYFQKAKESAPSKEIPSLQLINQTLGYARELERIV
B8LPE5______________MEGTLSDVSQVFDRFKAAFTRNDLSTCTTLLSQLKVMLTGFPSLPPLYCESPTAIHELTLARDIFEHAVVLSVKTEDQDAFERDFLQLKPYYTDTRDLIPPSAQEYPILGLNLLRLLVQNRIAEFHTELELLSPEALENPCIKHAVELEQSFMEGAYNRVLSARQAVPHETYVYFMDLLAKTVRDEIAGCSEKAYDYLSLQDAKQILMFSSNQDLEEYVTEEHPEWEIRNGCVYFQKAKESAPSKEIPSLQLINQTLGYARELERIV

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
93	16		33	50	1.0
94	16	16	16	50	0.988986
95			16	83	0.994512
96	16		33	50	1.0
98		16	16	50	0.988986
99	83			16	0.994512
100		16		83	0.994512
102		83	16		0.994512
103	16			83	0.994512
104	16		66	16	0.988813
105			16	83	0.994512
106			16	83	0.994512
107	16			83	0.994512
108			16	83	0.994512
109	16		66	16	0.988813
110	16	83			0.994512
111	16	83			0.994512
113	16			83	0.994512
114	16			83	0.994512
115		16		83	0.994512
117			83	16	0.994512
118	16	83			0.994512
119	16			83	0.994512
120	16			83	0.994512
124		83	16		0.994512
125	16			83	0.994512
128	16	83			0.994512
130	16		83		0.994512
142		66		33	1.0
157	66			33	1.0
192		50	50		1.0
241	66		33		1.0
544		25		75	0.996473
649		75		25	0.996473
1068			33	66	1.0
1128	33			66	1.0
1479		50		50	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain