SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1069

Length: 2517 nt

UniGene Fasta

>sp_v3.0_unigene1069
CACTACCTCGTTTGAGTTGACCGGAAGTGTTAGATGAAACTCCATCTATACAACCTTTAGGTGAACCAAACCTACCATAGTTGAACTCTGTACTGAGATTTCATGGTACTTTATAGTTGAACAAGTGAAAGCCCTGCTGCTCATGGTTATTTATTTCCTATATTCCATAGGGAGACTCGCATCTTTTTCAGGCCGGAGGGTTTTGGAGCAGAAAAGTAGGAGTATTCTCGAAGCGCGGAGAAGCTTTGGATCGAAGGATCGCTAGGACGATGGCCCAGAGGACGATAGCGCCTCTTGCTCGCAGATCCACACGCAACCTCCACGCTCCTCTTCAACGAAGTGGCATTTTGAGAGGCTTTGAACGAGGATATTCTGCCATTGCTTCTGATTTGGAGAGCAGAGCATGTGCTAAGGGAGATGCAAATTCCAGTGTGTGTAAGGATGTCAGCCAGAAAACACATGTACGCACATTTTCTCAGAATTTATCAAGAAATGTACCGACTGCAGCATGTCCAGAAATGACTACATATTTTCCAAGCATTTCTGTTCTTAATCGGCCCCCAAGAAATGCTCACTGGCCTAAAATTGTAGGGGATAGATTATCAGCAGGATATATAGCTTCACACTCTCTAAACAGTTCATCCACTTATTTGAAGCGGGGTTTTGCGACTGATTCTGGGCTTCCTTCACATCAGATTATTGGAATGCCTTCACTTTCTCCAACAATGTCAGAGGGTAATGTTGCAAAGTGGAAAAAGAAAGAGGGTGATAAAGTTTCAGCTGGGGATGTACTTTGTGAAATTGAGACTGATAAAGCAATTGTTGACATGGAAAGTATGGAGGATGGCTATTTGGCAAAAATTGTCCATGGTGACGGAGCAAAGGAAATTAAAGTTGGGGAGGTCATCGCAATTATGGTGGAAGATGAGGATGACATTGCAAAGTTCAAGGATTACACACCCTCGGGGCAGGGTGATGCTAATGAAAAAGCCTCTTCAAAGGAAACTACTCCTGCACCACCTCCACCAAAAGAAGACACTCCAAGCCCTGTCGCAACTCCTAAAACAGAGAAGAGTGCTGCATCTCCTCAATCAGAAGATCGCATTTTTGCTAGCCCTATTGCAAGAAAGATGGCAGAAGATCATAAGGTTCCAATTTCAAGCATAAAAGGTACTGGCCCCAATGGACGCATTGTGAAGGCTGATATAGAGGATTATTTAGCTTCTGTTTCAAAGGTCACTCCACCATCTGCACCCCCCACTAAGGAGCTTGAGTACACGGACATACCACTTTCACAGATAAGGAAGGTCACTGCTTCACGGCTTCTCCTTTCTAAACAGACAATTCCTCACTACTATTTGACTGTTGATACATGCGTTGACAAGCTTACAGAGTTGAGGAACCAGCTAAATGCATTACAGGAAGCATCTAGTGGGAAGAGGATTTCTGTCAATGACTTTGTGATAAAGGCTGCTGCATTAGCCCTTCGGAAGGTACCTCAATGTAACAGCTCATGGACTAATGAATATATTCGACAGTATCATAACATAAACATCAGTGTTGCAGTACAAACAGATAAGGGTTTGTTTGTCCCAGTTGTAAAAGATGCAGATAAGAAGGGGCTGTCTGCAATTGGGGAGGACGTAAAAGTTTTGGCGCAGAAAGCTAAAGAGAATACTTTGAAGCCAGCTGACTATGAGGGAGGGACGTTCACAGTATCCAATTTGGGAGGTCCATTTGGAATAAAACAGTTTTGTGCTATCATCAACCCTCCACAGTCAGCAATTCTGGCTGTGGGTTCAGCTGCAAAGCGAGTCATCCCAGGAGCACTTCCAGATCAATTTGATGTCAGTTCATTCATGTCTGTTACACTTAGCTGTGATCACCGAGTGATTGATGGTGCAATTGGTGCTGAATATCTGAGAGCATTTAAAGGATACATTGAGGATCCTTTGACGATGCTGCTTTAAATGGATGTTTAAGGCAGCTAGAAGTGCTTCTTTCATATGTTGGAGCAATATAGTTGGTGTAGATTATCCATTTCCACAGATGCAATGCAATTTTTCTCATATGTCTAAAGTGTTTCCTTTATTTATGAGGGCCTTTTAATGTCATAAAGTGGGATGGAGTTTCTTGAATAAGGCAGGTGAGCTTGAATAAGTTCCTTGTGCGGTTGCATTAGAACTAGTGGCTTTGGAACTTCCTTGAGGATTTGTAAGGAACTTATTCATGATTTTTGTTGGGAGAGTCAATTCAACAATAAGCAGAGTGAGAATTTTTTGATATGCAAGTAGGCATTGAATGGGCAAATAAGAAAGATTTTGGTAAAACATTGTTCAATTTTGAGCACTGATTTTCATTGATCGTAATGTGCCTAAATTTTATTCTGTCACGACTCACATCTATTATCTGTTTTACAGAGATATTGACAAAAATAATGTCATGTTTTAACGTCTGACTGGACATTTGTTTCGCCATATAAATTTGCAGAAGCAACACAATTAATACTAAGTAGTC

Ace file of the UniGene sp_v3.0_unigene1069

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	dihydrolipoamide acetyltransferase [Arabidopsis thaliana]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	2-oxoacid dehydrogenase acyltransferase, catalytic domain	IPR001078	-	-
Sma3	Dihydrolipoamide acetyltransferase, long form	IPR006257	-	-
Sma3	Biotin/lipoyl attachment	IPR000089	-	-
Sma3	E3 binding	IPR004167	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G13930.1	Dihydrolipoamide acetyltransferase, long form protein chr3:4596240-4600143 FORWARD LENGTH=539	71%
RefSeq	Arabidopsis thaliana	NP_566470.1	dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002303212.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLY8

Fln msg:

Fln protein: MAQRTIAPLARRSTRNLHAPLQRSGILRGFERGYSAIASDLESRACAKGDANSSVCKDVSQKTHVRTFSQNLSRNVPTAACPEMTTYFPSISVLNRPPRNAHWPKIVGDRLSAGYIASHSLNSSSTYLKRGFATDSGLPSHQIIGMPSLSPTMSEGNVAKWKKKEGDKVSAGDVLCEIETDKAIVDMESMEDGYLAKIVHGDGAKEIKVGEVIAIMVEDEDDIAKFKDYTPSGQGDANEKASSKETTPAPPPPKEDTPSPVATPKTEKSAASPQSEDRIFASPIARKMAEDHKVPISSIKGTGPNGRIVKADIEDYLASVSKVTPPSAPPTKELEYTDIPLSQIRKVTASRLLLSKQTIPHYYLTVDTCVDKLTELRNQLNALQEASSGKRISVNDFVIKAAALALRKVPQCNSSWTNEYIRQYHNINISVAVQTDKGLFVPVVKDADKKGLSAIGEDVKVLAQKAKENTLKPADYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVGSAAKRVIPGALPDQFDVSSFMSVTLSCDHRVIDGAIGAEYLRAFKGYIEDPLTMLL*

Protein Length: 568

Fln nts: CACTACCTCGTTTGAGTTGACCGGAAGTGTTAGATGAAACTCCATCTATACAACCTTTAGGTGAACCAAACCTACCATAGTTGAACTCTGTACTGAGATTTCATGGTACTTTATAGTTGAACAAGTGAAAGCCCTGCTGCTCATGGTTATTTATTTCCTATATTCCATAGGGAGACTCGCATCTTTTTCAGGCCGGAGGGTTTTGGAGCAGAAAAGTAGGAGTATTCTCGAAGCGCGGAGAAGCTTTGGATCGAAGGATCGCTAGGACG_-_ATGGCCCAGAGGACGATAGCGCCTCTTGCTCGCAGATCCACACGCAACCTCCACGCTCCTCTTCAACGAAGTGGCATTTTGAGAGGCTTTGAACGAGGATATTCTGCCATTGCTTCTGATTTGGAGAGCAGAGCATGTGCTAAGGGAGATGCAAATTCCAGTGTGTGTAAGGATGTCAGCCAGAAAACACATGTACGCACATTTTCTCAGAATTTATCAAGAAATGTACCGACTGCAGCATGTCCAGAAATGACTACATATTTTCCAAGCATTTCTGTTCTTAATCGGCCCCCAAGAAATGCTCACTGGCCTAAAATTGTAGGGGATAGATTATCAGCAGGATATATAGCTTCACACTCTCTAAACAGTTCATCCACTTATTTGAAGCGGGGTTTTGCGACTGATTCTGGGCTTCCTTCACATCAGATTATTGGAATGCCTTCACTTTCTCCAACAATGTCAGAGGGTAATGTTGCAAAGTGGAAAAAGAAAGAGGGTGATAAAGTTTCAGCTGGGGATGTACTTTGTGAAATTGAGACTGATAAAGCAATTGTTGACATGGAAAGTATGGAGGATGGCTATTTGGCAAAAATTGTCCATGGTGACGGAGCAAAGGAAATTAAAGTTGGGGAGGTCATCGCAATTATGGTGGAAGATGAGGATGACATTGCAAAGTTCAAGGATTACACACCCTCGGGGCAGGGTGATGCTAATGAAAAAGCCTCTTCAAAGGAAACTACTCCTGCACCACCTCCACCAAAAGAAGACACTCCAAGCCCTGTCGCAACTCCTAAAACAGAGAAGAGTGCTGCATCTCCTCAATCAGAAGATCGCATTTTTGCTAGCCCTATTGCAAGAAAGATGGCAGAAGATCATAAGGTTCCAATTTCAAGCATAAAAGGTACTGGCCCCAATGGACGCATTGTGAAGGCTGATATAGAGGATTATTTAGCTTCTGTTTCAAAGGTCACTCCACCATCTGCACCCCCCACTAAGGAGCTTGAGTACACGGACATACCACTTTCACAGATAAGGAAGGTCACTGCTTCACGGCTTCTCCTTTCTAAACAGACAATTCCTCACTACTATTTGACTGTTGATACATGCGTTGACAAGCTTACAGAGTTGAGGAACCAGCTAAATGCATTACAGGAAGCATCTAGTGGGAAGAGGATTTCTGTCAATGACTTTGTGATAAAGGCTGCTGCATTAGCCCTTCGGAAGGTACCTCAATGTAACAGCTCATGGACTAATGAATATATTCGACAGTATCATAACATAAACATCAGTGTTGCAGTACAAACAGATAAGGGTTTGTTTGTCCCAGTTGTAAAAGATGCAGATAAGAAGGGGCTGTCTGCAATTGGGGAGGACGTAAAAGTTTTGGCGCAGAAAGCTAAAGAGAATACTTTGAAGCCAGCTGACTATGAGGGAGGGACGTTCACAGTATCCAATTTGGGAGGTCCATTTGGAATAAAACAGTTTTGTGCTATCATCAACCCTCCACAGTCAGCAATTCTGGCTGTGGGTTCAGCTGCAAAGCGAGTCATCCCAGGAGCACTTCCAGATCAATTTGATGTCAGTTCATTCATGTCTGTTACACTTAGCTGTGATCACCGAGTGATTGATGGTGCAATTGGTGCTGAATATCTGAGAGCATTTAAAGGATACATTGAGGATCCTTTGACGATGCTGCTTTAA___ATGGATGTTTAAGGCAGCTAGAAGTGCTTCTTTCATATGTTGGAGCAATATAGTTGGTGTAGATTATCCATTTCCACAGATGCAATGCAATTTTTCTCATATGTCTAAAGTGTTTCCTTTATTTATGAGGGCCTTTTAATGTCATAAAGTGGGATGGAGTTTCTTGAATAAGGCAGGTGAGCTTGAATAAGTTCCTTGTGCGGTTGCATTAGAACTAGTGGCTTTGGAACTTCCTTGAGGATTTGTAAGGAACTTATTCATGATTTTTGTTGGGAGAGTCAATTCAACAATAAGCAGAGTGAGAATTTTTTGATATGCAAGTAGGCATTGAATGGGCAAATAAGAAAGATTTTGGTAAAACATTGTTCAATTTTGAGCACTGATTTTCATTGATCGTAATGTGCCTAAATTTTATTCTGTCACGACTCACATCTATTATCTGTTTTACAGAGATATTGACAAAAATAATGTCATGTTTTAACGTCTGACTGGACATTTGTTTCGCCATATAAATTTGCAGAAGCAACACAATTAATACTAAGTAGTC

Fln Alignment:

Contig1069___MAQRTIAPLARRSTRNLHAPLQRSGILRGFERGYSAIASDLESRACAKGDANSSVCKDVSQKTHVRTFSQNLSRNVPTAACPEMTTYFPSISVLNRPPRNAHWPKIVGDRLSAGYIASHSLNSSSTYLKRGFATDSGLPSHQIIGMPSLSPTMSEGNVAKWKKKEGDKVSAGDVLCEIETDKAIVDMESMEDGYLAKIVHGDGAKEIKVGEVIAIMVEDEDDIAKFKDYTPSGQGDANEKXXXXXXXXXXXXXXXXXXXXVATPKTEKSAASPQSEDRIFASPIARKMAEDHKVPISSIKGTGPNGRIVKADIEDYLASVSKVTPPSAPPTKELEYTDIPLSQIRKVTASRLLLSKQTIPHYYLTVDTCVDKLTELRNQLNALQEASSGKRISVNDFVIKAAALALRKVPQCNSSWTNEYIRQYHNINISVAVQTDKGLFVPVVKDADKKGLSAIGEDVKVLAQKAKENTLKPADYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVGSAAKRVIPGALPDQFDVSSFMSVTLSCDHRVIDGAIGAEYLRAFKGYIEDPLTMLL
B8LLY8______________MAQRTIAPLARRSARNLHAPLQGSGILRGFERGYSAIASDLERRACTKGDGNSIVCEDVSQKTHVHTFSQKLSRNVQPAASPEMTTYFPRSSVLNQAPRNVHWPKIVGDRLSAGSIASHLLNSSSTYMKRSFATDAGLPPHQEIGMPSLSPTMSEGNVAKWKKKEGDKVSAGDVLCEIETDKAIVDMESMEDGYLAKIVHGDGAKEIKIGEVIAIMVEDEDDIAKFKDYTPSGQGAANEKAPSKETTPPPPPPKEDTPSPVTIPKTEKSTASPQSEDRIFASPIARKMAEDHKVPISSIKGTGPNGRIVKADIEDYLASVSKATPPSTPPTKTLEYTDIPLSQIRKVTASRLLLSKQTIPHYYLTVDTCVDKLMVLRNQLNALQEASNGKRISVNDFVIKAAASALRKVPQCNSSWTNEYIRQYHNINISVAVQTDKGLFVPVVKDADKKGLSAIGEDVKVLAQKAKENTLKPADYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVGSAEKRVIPGALQDQFDVGSFMSVTLSCDHRVIDGAIGAEYLKAFKGYIEDPLTMLL

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
57		25		75	0.996473
58			25	75	0.996473
59	75			25	0.996473
60		25	75		0.996473
65	75	25			0.996473
67		75		25	0.996473
68	75			25	0.996473
69	75		25		0.996473
70	75		25		0.996473
72		75	25		0.996473
116		50	50		1.0
957	83		16		0.994512
968	16		83		0.994512
1442		11	88		0.999937
1577		30		70	1.0
1583	10			90	0.90298
1584	10			90	0.90298
1585		11		88	0.923564
1586	12		87		0.992554
1595	85		14		0.993533
1813	88		11		0.999937
2059	87			12	0.992554
2276		2		91	0.99441
2306	6		93		0.999264
2325	10		89		0.999919
2326		17		76	1.0
2390		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain