SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1063

Length: 3621 nt

UniGene Fasta

>sp_v3.0_unigene1063
CTGCTTAAGCAGTGGTATCAACGCAGAGTACACGGGGGGCATAGGGTCACATGCTTTGTTGGGGAGCCTAGAATAGACGACCCTGTGATCGCGTCGGCGGCTACTTGGCTTTAAAGAGGCGGAGAAGAGTTTGTGGTGAAGAAGTGGTAGTGTTGAGGTATGCTTTCCATTGCATGAAGAGCGCGTGACAGGAGGAGCACTGGAAGGCTGTCTGTTCACTCCGCCATATATTTTGACCCTAATGCTTGCGTTTCTGTAACGCCTGTGTGCTTCCGATCGTTAAAGATTTGATCTCCCTGCGGCGGCCTAAAGGGTTGGCCTTGGTCCGGGTACAACCATGACGCCGGACGAGAAGGCCACCAGCGGCCTTGAAAGCATCAAGAACGAATCGGTCGATCTTGAACGAATTCCTATCGAGGAAGTTTTCGAACAGCTACGATGTACCAGGGAGGGTTTGTCATCGACAGAAGGAGAGAATCGTCTCCAGGTTTTTGGATACAACAAATTAGAGGAGAAAAAGGAGAGCAAGCTTCTGAAATTCCTAGGGTTTATGTGGAATCCTTTATCATGGGTGATGGAGATAGCAGCTATAATGGCAATTGCTTTGGCAAACGGAGATGGTAAGCCTCCAGATTGGCAAGATTTCCTTGGAATCGTCGTGTTGCTAGTTATCAATTCCACAATCAGTTTCATAGAAGAAAACAATGCCGGAAATGCAGCGGCTGCCCTCATGGCTGGTCTTGCACCAAAGACCAAGGTTCTTCGTGATGGAAGATGGCAAGAACAAGAAGCTTCAATTCTTGTCCCAGGTGATATCATCAGTATCAAATTAGGGGACATTGTGCCTGCTGATGCTCGTCTTCTTGAAGGTGATCCTTTAAAGATTGACCAGTCTGCTCTGACTGGTGAGTCGCTTCCTGTGACAAGAAACCCCGGGGAAGAGGTGTTTTCAGGGTCTACCTGTAAGCAGGGAGAAATTGAGGCGGTTGTTATTGCAACGGGAGTTCACACATTCTTTGGGAAGGCTGCTCATTTGGTAGACTCAACCAACAATGTGGGGCATTTTCAAAAGGTTCTTACGGCCATTGGAAACTTCTGTATTTGCTCCATTGCAATTGGAATGGTAGTAGAGATCATTGTTATGTATCCTATTCAACATAGGAAATACAGGGATGGAATTAACAATCTTCTGGTTCTGTTGATCGGTGGGATTCCGATCGCAATGCCTACCGTGTTATCTGTAACAATGGCAATTGGCTCCCACAGACTTTCTCAACAGGGGGCTATTACAAAAAGAATGACTGCCATTGAAGAAATGGCAGGGATGGATGTGCTATGTAGTGATAAGACTGGAACACTTACTCTGAACAAGCTGAGCGTCGATAAAAATCTCATTGAGGTATTTGTGAAAGATGTGGACAAAGACCATGTGGTTTTGCTTGCAGCTAGAGCCTCCAGAACTGAAAATCAAGATGCCATTGATGCTGCTATTGTTGGAATGTTGGCAGATCCAAAAGAGGCTCGAGCGGGGATTACTGAGATCCATTTCTTACCTTTTAATCCGGTTGACAAACGTACAGCACTTACATATGTTGATGCTCATGGAAAATGGCATCGTGCTAGTAAAGGAGCACCAGAGCAGATTCTTGACCTCTGCCATTGCAAGGAAGACGTGAGAAATAAAGTACATTCAGTGATTGATAAATTTGCTGAGCGTGGACTTCGTTCCCTTGCTGTAGCTAGACAGGAAGTTCCTGAAAGGACCAAAGAGAGTGAGGGAACCCCATGGCAATTTGTTGGAGTGCTGCCTCTATTTGATCCTCCTCGCCATGATAGTGCTGAAACAATCCGTCGAGCTCTTAATCTTGGTGTCAATGTAAAGATGATCACAGGTGATCAGCTTGCCATTGCCAAAGAGACAGGGCGGAGGCTTGGAATGGGAACAAACATGTACCCTTCGTCTTCGTTGCTTGGTAATAATAAGGATGCATCAATTGCATCTCTTCCTGTTGATGAATTGATTGAAAAGGCCGATGGCTTCGCTGGGGTGTTTCCAGAACACAAATATGAGATAGTGAGACGGCTACAGGAAAAGAAGCATATCTGTGGAATGACAGGAGATGGTGTTAATGATGCTCCAGCCTTGAAAAAGGCAGATATTGGAATTGCAGTGGCAGATGCAACTGATGCAGCTAGAAGTGCGTCTGATATTGTGCTTACTGAGCCAGGGCTGAGTGTTATTATTAGTGCTGTTTTAACAAGTCGGGCAATCTTTCAGAGAATGAAGAATTACACGATATATGCTGTGTCAATCACTATTCGTATTGTGTTGGGTTTCCTGCTTATTGCCTTGATATGGCAATTCGACTTTTCTCCATTCATGGTTTTGATCATAGCTATTCTGAACGACGGTACAATTATGACCATTTCTAAGGATCGCGTCAAGCCATCCCCTCAGCCTGATAGCTGGAAATTGAAGGAAATTTTTGCAACTGGGGTTGTTTTGGGAACATACCTTGCAGTAATGACAGTGATATTTTTCTGGGCTATGTACAAGACTGATTTCTTTTCGGACAAGTTTGGAGTAAGGTCTATCAGGAATTCTCCCCATGAGTTAACATCTGCGCTATACTTACAAGTCAGCATTGTGAGCCAAGCTCTCATTTTTGTGACAAGATCTCGCAGCTGGTCATTTGTAGAACGACCTGGGCTTCTGCTTATGACTGCATTTGTTATTGCCCAGCTGATTGCAACATTCCTTGCAGTTTATGCAGACTTTAGTTTTGCAAACATCAAACCTATTGGTTGGGGTTGGGCAGGAGTAATTTGGCTATACAGTCTAGTGTTCTATTTTCCTTTGGATGTCTTTAAGTTCGCTGTTCGCTATGCCCTGAGTGGGAAGGCTTGGGATAATCTTATTGAACGCAAGACTGCCTTCACATCTAAGAAGGACTATGGTAAAGAGGAGCGTGAAGCACAATGGGCTCATGCTCAGCGTACATTACACGGTCTTCATCCACCTGAAACGCATTTATTCAATGAGAAGAGCAGCTACCGAGAGTTGTCAGAAATTGCTGAACAAGCAAAGAGGCGTGCTGAAGTTGCCAGGCTTAGGGAGTTGAATACATTGAAGGGGCATGTGGAGTCTGTGGTCAAGCTGAAGGGTCTTGATATTAATACTATCCAACAGTCTTACACTGTGTGATTTTAATGTATTGGGGTTTGATTTTACTGTGCCTCGTGTGTTATGCAAAAATGGACCAAAAGAGCTATTCCAGATGTTATGACAAGAATGGCTATTGCCTCTGTTTTTGGTTCTGTAGGAAAATATTTTTTGTAGAAACGAACTATTTTTTATCCTTTTTGTGAAGCAATGTCAAGGCATGAAATTGCAGACTGCAGTACAACTGCCTGCATGCTTTTAATTCTGTGTCTCTGGATTCTGATTTTGCGATTTCATTTTGATTCTTTTGGCCCTGTCTTTAAAGAAGGAAGCATCAGGTCTGAAATAATTGATTGTTGCAATTTTAGTCTAGTACACAATGAAAGCTTCTGATTAACATGTTTCATTTTTTGATGTGTGATGAATCACAATGTTCAAAAAAAAAGCTTCTGATTAAC

Ace file of the UniGene sp_v3.0_unigene1063

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Plasma membrane ATPase n=11 Tax=Magnoliophyta RepID=PMA1_ORYSJ	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-
Sma3	ATPase, P-type, plasma-membrane proton-efflux	IPR006534	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G18960.1	AHA1, PMA, OST2, HA1 H(+)-ATPase 1 chr2:8221858-8227268 FORWARD LENGTH=949	84%
RefSeq	Arabidopsis thaliana	NP_194748.1	H(+)-ATPase 2 [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002325038.1	autoinhibited H+ ATPase [Populus trichocarpa]	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQS1

Fln msg:

Fln protein: MTPDEKATSGLESIKNESVDLERIPIEEVFEQLRCTREGLSSTEGENRLQVFGYNKLEEKKESKLLKFLGFMWNPLSWVMEIAAIMAIALANGDGKPPDWQDFLGIVVLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWQEQEASILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTRNPGEEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQKVLTAIGNFCICSIAIGMVVEIIVMYPIQHRKYRDGINNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKDVDKDHVVLLAARASRTENQDAIDAAIVGMLADPKEARAGITEIHFLPFNPVDKRTALTYVDAHGKWHRASKGAPEQILDLCHCKEDVRNKVHSVIDKFAERGLRSLAVARQEVPERTKESEGTPWQFVGVLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGNNKDASIASLPVDELIEKADGFAGVFPEHKYEIVRRLQEKKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLIALIWQFDFSPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGTYLAVMTVIFFWAMYKTDFFSDKFGVRSIRNSPHELTSALYLQVSIVSQALIFVTRSRSWSFVERPGLLLMTAFVIAQLIATFLAVYADFSFANIKPIGWGWAGVIWLYSLVFYFPLDVFKFAVRYALSGKAWDNLIERKTAFTSKKDYGKEEREAQWAHAQRTLHGLHPPETHLFNEKSSYRELSEIAEQAKRRAEVARLRELNTLKGHVESVVKLKGLDINTIQQSYTV*

Protein Length: 957

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACACGGGGGGCATAGGGTCACATGCTTTGTTGGGGAGCCTAGAATAGACGACCCTGTGATCGCGTCGGCGGCTACTTGGCTTTAAAGAGGCGGAGAAGAGTTTGTGGTGAAGAAGTGGTAGTGTTGAGGTATGCTTTCCATTGCATGAAGAGCGCGTGACAGGAGGAGCACTGGAAGGCTGTCTGTTCACTCCGCCATATATTTTGACCCTAATGCTTGCGTTTCTGTAACGCCTGTGTGCTTCCGATCGTTAAAGATTTGATCTCCCTGCGGCGGCCTAAAGGGTTGGCCTTGGTCCGGGTACAACC_-_ATGACGCCGGACGAGAAGGCCACCAGCGGCCTTGAAAGCATCAAGAACGAATCGGTCGATCTTGAACGAATTCCTATCGAGGAAGTTTTCGAACAGCTACGATGTACCAGGGAGGGTTTGTCATCGACAGAAGGAGAGAATCGTCTCCAGGTTTTTGGATACAACAAATTAGAGGAGAAAAAGGAGAGCAAGCTTCTGAAATTCCTAGGGTTTATGTGGAATCCTTTATCATGGGTGATGGAGATAGCAGCTATAATGGCAATTGCTTTGGCAAACGGAGATGGTAAGCCTCCAGATTGGCAAGATTTCCTTGGAATCGTCGTGTTGCTAGTTATCAATTCCACAATCAGTTTCATAGAAGAAAACAATGCCGGAAATGCAGCGGCTGCCCTCATGGCTGGTCTTGCACCAAAGACCAAGGTTCTTCGTGATGGAAGATGGCAAGAACAAGAAGCTTCAATTCTTGTCCCAGGTGATATCATCAGTATCAAATTAGGGGACATTGTGCCTGCTGATGCTCGTCTTCTTGAAGGTGATCCTTTAAAGATTGACCAGTCTGCTCTGACTGGTGAGTCGCTTCCTGTGACAAGAAACCCCGGGGAAGAGGTGTTTTCAGGGTCTACCTGTAAGCAGGGAGAAATTGAGGCGGTTGTTATTGCAACGGGAGTTCACACATTCTTTGGGAAGGCTGCTCATTTGGTAGACTCAACCAACAATGTGGGGCATTTTCAAAAGGTTCTTACGGCCATTGGAAACTTCTGTATTTGCTCCATTGCAATTGGAATGGTAGTAGAGATCATTGTTATGTATCCTATTCAACATAGGAAATACAGGGATGGAATTAACAATCTTCTGGTTCTGTTGATCGGTGGGATTCCGATCGCAATGCCTACCGTGTTATCTGTAACAATGGCAATTGGCTCCCACAGACTTTCTCAACAGGGGGCTATTACAAAAAGAATGACTGCCATTGAAGAAATGGCAGGGATGGATGTGCTATGTAGTGATAAGACTGGAACACTTACTCTGAACAAGCTGAGCGTCGATAAAAATCTCATTGAGGTATTTGTGAAAGATGTGGACAAAGACCATGTGGTTTTGCTTGCAGCTAGAGCCTCCAGAACTGAAAATCAAGATGCCATTGATGCTGCTATTGTTGGAATGTTGGCAGATCCAAAAGAGGCTCGAGCGGGGATTACTGAGATCCATTTCTTACCTTTTAATCCGGTTGACAAACGTACAGCACTTACATATGTTGATGCTCATGGAAAATGGCATCGTGCTAGTAAAGGAGCACCAGAGCAGATTCTTGACCTCTGCCATTGCAAGGAAGACGTGAGAAATAAAGTACATTCAGTGATTGATAAATTTGCTGAGCGTGGACTTCGTTCCCTTGCTGTAGCTAGACAGGAAGTTCCTGAAAGGACCAAAGAGAGTGAGGGAACCCCATGGCAATTTGTTGGAGTGCTGCCTCTATTTGATCCTCCTCGCCATGATAGTGCTGAAACAATCCGTCGAGCTCTTAATCTTGGTGTCAATGTAAAGATGATCACAGGTGATCAGCTTGCCATTGCCAAAGAGACAGGGCGGAGGCTTGGAATGGGAACAAACATGTACCCTTCGTCTTCGTTGCTTGGTAATAATAAGGATGCATCAATTGCATCTCTTCCTGTTGATGAATTGATTGAAAAGGCCGATGGCTTCGCTGGGGTGTTTCCAGAACACAAATATGAGATAGTGAGACGGCTACAGGAAAAGAAGCATATCTGTGGAATGACAGGAGATGGTGTTAATGATGCTCCAGCCTTGAAAAAGGCAGATATTGGAATTGCAGTGGCAGATGCAACTGATGCAGCTAGAAGTGCGTCTGATATTGTGCTTACTGAGCCAGGGCTGAGTGTTATTATTAGTGCTGTTTTAACAAGTCGGGCAATCTTTCAGAGAATGAAGAATTACACGATATATGCTGTGTCAATCACTATTCGTATTGTGTTGGGTTTCCTGCTTATTGCCTTGATATGGCAATTCGACTTTTCTCCATTCATGGTTTTGATCATAGCTATTCTGAACGACGGTACAATTATGACCATTTCTAAGGATCGCGTCAAGCCATCCCCTCAGCCTGATAGCTGGAAATTGAAGGAAATTTTTGCAACTGGGGTTGTTTTGGGAACATACCTTGCAGTAATGACAGTGATATTTTTCTGGGCTATGTACAAGACTGATTTCTTTTCGGACAAGTTTGGAGTAAGGTCTATCAGGAATTCTCCCCATGAGTTAACATCTGCGCTATACTTACAAGTCAGCATTGTGAGCCAAGCTCTCATTTTTGTGACAAGATCTCGCAGCTGGTCATTTGTAGAACGACCTGGGCTTCTGCTTATGACTGCATTTGTTATTGCCCAGCTGATTGCAACATTCCTTGCAGTTTATGCAGACTTTAGTTTTGCAAACATCAAACCTATTGGTTGGGGTTGGGCAGGAGTAATTTGGCTATACAGTCTAGTGTTCTATTTTCCTTTGGATGTCTTTAAGTTCGCTGTTCGCTATGCCCTGAGTGGGAAGGCTTGGGATAATCTTATTGAACGCAAGACTGCCTTCACATCTAAGAAGGACTATGGTAAAGAGGAGCGTGAAGCACAATGGGCTCATGCTCAGCGTACATTACACGGTCTTCATCCACCTGAAACGCATTTATTCAATGAGAAGAGCAGCTACCGAGAGTTGTCAGAAATTGCTGAACAAGCAAAGAGGCGTGCTGAAGTTGCCAGGCTTAGGGAGTTGAATACATTGAAGGGGCATGTGGAGTCTGTGGTCAAGCTGAAGGGTCTTGATATTAATACTATCCAACAGTCTTACACTGTGTGA___TTTTAATGTATTGGGGTTTGATTTTACTGTGCCTCGTGTGTTATGCAAAAATGGACCAAAAGAGCTATTCCAGATGTTATGACAAGAATGGCTATTGCCTCTGTTTTTGGTTCTGTAGGAAAATATTTTTTGTAGAAACGAACTATTTTTTATCCTTTTTGTGAAGCAATGTCAAGGCATGAAATTGCAGACTGCAGTACAACTGCCTGCATGCTTTTAATTCTGTGTCTCTGGATTCTGATTTTGCGATTTCATTTTGATTCTTTTGGCCCTGTCTTTAAAGAAGGAAGCATCAGGTCTGAAATAATTGATTGTTGCAATTTTAGTCTAGTACACAATGAAAGCTTCTGATTAACATGTTTCATTTTTTGATGTGTGATGAATCACAATGTTCAAAAAAAAAGCTTCTGATTAAC

Fln Alignment:

Contig1063___MTPDEKATSGLESIKNESVDLERIPIEEVFEQLRCTREGLSSTEGENRLQVFGYNXXXXXXXXXXXXFLGFMWNPLSWVMEXXXXXXXXXXNGDGKPPDWQDFLGIVVLLVINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDGRWQEQEASILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTRNPGEEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQKVLTAIGNFCICSIAIGMVVEIIVMYPIQHRKYRDXXXXXXXXXXXXXXXAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEXXXXXXXXXXXXLLAARASRTENQDAIDAAIVGMLADPKEARAGITEIHFLPFNPVDKRTALTYVDAHGKWHRASKGAPEQILDLCHCKEDVRNKVHSVIDKFAERGLRSLAVARQEVPERTKESEGTPWQFVGVLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGNNKDASIASLPVDELIEKADGFAGVFPEHKYEIVRRLQEKKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLIALIWQFDFSPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGTYLAVMTVIFFWAMYKTDFFSDKFGVRSIRNSPHELTSALYLQVSIVSQALIFVTRSRSWSFVERPGLLLMTAFVIAQLIATFLAVYADFSFANIKPIGWGWAGVIWLYSLVFYFPLDVFKFAVRYALSGKAWDNLIERKTAFTSKKDYGKEEREAQWAHAQRTLHGLHPPETHLFNEKSSYRELSEIAEQAKRRAEVARLRELNTLKGHVESVVKLKGLDINTIQQSYTV
B8LQS1______________MTPDEKATSGLEGIKNESVDLERIPIEEVFEQLRCTREGLTSNEGENRLQIFGFNKLEEKKESKFLKFLGFMWNPLSWVMEIAAIMAIALANGDNKPPDWQDFLGIVVLLVINSTISFVEENNAGNAAAALMAGLAPKTKVLRDGRWQEQDAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTRNPGEEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQKVLTAIGNFCICSIAIGIVIEIIVMYPIQHRKYRDGINNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKDVDKDHVVLLAARASRVENQDAIDAAIVGMLADPKEARAGVTEVHFLPFNPVEKRTALTYVDAHGKWHRASKGAPEQILDLCHCKEDVRNKVHSVIDKFAERGLRSLAVARQEVPERTKESGGTPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGNDKDASIASLPVDELIEKADGFAGVFPEHKYEIVRRLQEKKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLIALIWRFDFSPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGTYLAVMTVIFFWAMHKTDFFPNKFGVRPIRDSPHELTSALYLQVSIVSQALIFVTRSRSWSFVERPGLLLMTAFIIAQLIATFLAVYADFSFANIKPIGWGWAGVIWLYSLVFYFPLDIFKFAVRYALSGKAWDNLIERKTAFTSKKDYGKEEREAQWAHAQRTLHGLHPPETHLFNERSSYRELSEIAEQAKRRAEVARLRELNTLKGHVESVVKLKGLDIDTIQQSYTV

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
310	87		12		0.992554
905	8		87	4	0.999414
985		75	25		1.0
1000	11		88		0.923564
1001			88	11	0.923564
1002			88	11	0.923564
1046	88			11	0.923564
1047		88		11	0.923564
1756		85		14	0.999981
2147	75		4		1.0
2389	11		88		0.923564
3118	0		97		0.962136
3563	14			85	0.993533
3564	14		85		0.993533
3587	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain