SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1047

Length: 3319 nt

UniGene Fasta

>sp_v3.0_unigene1047
GGAACAACAAATATTTGTGCTGTGCTGTGCAGTGTACTGACGGATTTACCATTAAAAAATGGAGCTCATCACCCCTCCCACACCAGAAGAAGTGAACGAAGTAATTAACAATCATCATTCAAAGCAAGAAGAAGAAGAGGAGGAGGTATTACAGCAGCCCATCATCAAAATTCATGAACCTTCCTGGGTTATAGATCTCCCGCAGCAGCCCTCTACAGATATCTCCGGCTCTTCAGATGGACACCCAGTTATTGATGCATACGACAATGACCAGATGTCAATCATAGCTCGGAAATGTGTGTCTGAGCAACACGAAAGAAGGGTTCAAGAGCTCACCAAAGACTGCGAGCAGGCAAAGAACGAATGCCATGAGGCCTGGATGTGCCTGCGAGACTCCACTCGCCAACTCGAAGAGCTCAGAAATGACCACCATTTCAAATCCTTACAGGTCAATTCTCTAGAGGGCCGACTGACTGAGTTAACAGAGCTTCAAGAAAAACACGAGAAGGATAAGAAGTTGTGGGTGTCCTCAATGCAAGACTTGAATGCTAAAATCCAGGTCTTAAGGGGTGATTATCATAAGCTTTCAGAAGAGGCACGTTCCAATTCCTTTCCTGATATCAGTGGCATAACCTCAGCCATGGAGTCACTGAGTGTACAATATGAGGATCTCAAGAAGAAGTACATTGAAGAGAGTAAGGAACGAAAGCAGCTTTACAATGAATTGTTGGAGCTGAAAGGAAACATCAGGGTTTTCTGTAGGTGTCGCCCATTGAGTGCAGAAGAAATTGCAACAGGAGCTTCTTCTATAGTGGAATTTGATAAATCTAAAGACAATGAACTTGCTATAAATATTAATAGTGCTTCAAAAAAGAACTTCAAATTTGATCGTGTTTTCACTCCAGAAGATAATCAGGAGGATGTCTTTCTGGATACTGCCCCAGTCGTTGTCTCTGTTTTAGATGGGTACAATGTTTGCATCTTTGCATATGGGCAAACTGGAACTGGAAAAACATTTACAATGGAGGGTACCCCAGAAAATAGGGGAGTTAACTTTCGTACATTGGAGGAACTTTTTCGAGTGGCTGAGGAAAGAAAGGGACAATACAATTATGATATCTCAGTGAGCGTATTGGAAGTTTACAATGAGCAAATTCGTGATCTTCTTGCATCCCCAGCACAGCAAGGACAACATGCAAAGAAGTTGGATATAAAACAGGTGGCTGAAGGGGTTCAACATGTGCCAGGACTTGTGGAAGCAAAAGTGCAGAACATGAATGAGGTTTGGGAAGTGTTGCAAACTGGAAGTGCTGCTAGAGCTGTTGGCTCCACGAATGCAAATGAACTTAGTAGTCGTTCACACTGTATACTTAGCGTGATGGTGACAGCGAAGAGCTTAGTCAATGGGCAGTTCACAACGAGTAAGCTGTGGCTGGTTGATCTTGCAGGCAGTGAGAGAATAGCAAAAACTGATGTCCACGGGGAGCGTCTAAAAGAAGCACAATATATCAATAAGTCCCTATCTGCTCTCGGTGATGTCATATCTGCCCTTACAACCAAAAGCAGTCATATACCATACAGGAACTCTAAGCTTACGCATTTGCTGCAAGATTCATTGGGAGGAGATTCAAAGACTCTGATGTTTGTACAAATTAGTCCCCATGAAAATGACACGGGAGAAACTCTGTGCTCACTGAACTTTGCCAGCAGAGTTCGAGGATTAGAGCTTGGTCCTACTCGGAGACAGCAAGATGCTGGTGAAGTTTTCAAGTATAAACAGATGATTGAGAGGATTAGACAGGATGGAAAAGAGGTAAAGAAGATGGAAGAGAGCTTGCAAAATATGGAGATCAAATTCAAGGGAAGGGAACAGATGTGCAGAAATCTTCAGGAGAAGATAAAAGAACTTGAAGCTCAACTGGCAAAGGAGAGGAAAGCTCGGGCTATATGTGAGACCAAGCTGAGAGACCATCAGCGCCATTCAGAAAAGTTGCCTGAGAAGAAAGCCCCACTATTTCGTGAGTCCAATAGTTCGAGGAGTGTTAGAGGAAGAACCCCTTTGAGCAAGGATCTTACTAATCTGCCAAAACAGGGTTTAACTTTGGACCGCAATATAAAGCAACACGATGGTAGATCATTTATGAAGATGAACATGATTGAATCCTTTGCTAGTGGCACTCCTTTAAATAAAGAAAATGAAGGCAAATCAACTGTAATTGAACGCAAGAAAGGGCGGTTTTCCATGTGTGCACTACCCCCTAGATCTTCTGTACTTCCGTCTGCAAGAAGAATATCAATGATCCCCGCTCCCCCATTACGAAGCGCCATATTTAAAACTGAAGCAGCGGTTGATCATTCTGGCCGAAATGACAGAATAGCTCGAAGAACTTCAATGAGTACTTTGTCTCGGAGAACTTCTTCCATTCCAATGCCAAGAAGAACTTCCATGGCTGTCCTACCAATGAGAAGGAATGAGGTGTCAACATCTGAACTCCAGCTACCTGCCCACCAATTTGCCTTATCACCAGCGGAGGAGAAATGTGGAAAAAATAACATCCCATATCACGACTCTGGTGCACCCCATACCTCAACTCCTGTTAGTTTGCGAGGGGTAAAAATTTCACATGCTTTAGATAGATTTCGTGGCACTATTCACAGTAAGGTTCGCCTCAATTCTCCTTTGGTCAAAGCATCCAATGCCCTTCAAGAAATTAACCAGAAGCAAGAAAACCACACAACTGAAACTGATGATAATTTCATGGTTGCTTCATCTTTGTCATTGGATCAGAAGCCACAACCAAATGAGATTAACCGTCTCAGGCATTTGAGCAATATGAGAACATGGGGAAGTCATTCAGCTGCAGGGGCTCGTGCTCAAAGGGTTTTGTGTGGAAACAAGACAAGCTCGAGGTCTATTATGGAAGACAGGGAAAATGAAACAAGGAGTGGGCAACTAGAAAGTGGAGATATTTTATCCAACAGATGAAAGTAATCCTAGTTATAAGGAAGCTAAATAATTTCTATTCTAGACGTATTTGATGACTATTTGAGTATGCAAGGTCTTTGTCCAGTTGGACACGGGTTGACAGGAAGGAAATCTGGCCTGAAAGGAAACATGCAGATGGTGCCTTTTGTAGGTTCTTGTATTTTCTTTCAATGTAACACAGTTAATATGTATTATAGTTATAATGTCGCCTGTAAAACACAACTTTATCATGCCTTCCCCCTAATTTTATTGGCATCCAGGGCAATAAAGAGCTGTAAAATTTTCAATTTTACTCCAAGTTTCTATAACTCGTAAAACATAGAGAGTTTCTGT

Ace file of the UniGene sp_v3.0_unigene1047

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Di-glucose binding protein with Kinesin motor domain n=1 Tax=Arabidopsis thaliana RepID=F4IJK6_ARATH	-	-	0.0	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Sma3	Kinesin heavy chain	-	-	2.528e-11	-

Source	Gene names
Sma3	ATK2; ATK3; ATK4; At1g55550; At1g72250; At2g22610; At2g47500; At4g27180; At5g27000; At5g54670; At5g65930; B1317D11.110; CHLREDRAFT_102475; CHLREDRAFT_119255; CHLREDRAFT_120667; F2P16.12; GSVIVT00011633001; GSVIVT00015075001; GSVIVT00017678001; GSVIVT00022

Source	GOs	Term	Type	Identity
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	microtubule binding	GO:0008017	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	mitosis	GO:0007067	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	FERM domain	IPR000299	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	MyTH4 domain	IPR000857	-	-
Sma3	Bet v I domain	IPR000916	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	FERM/acyl-CoA-binding protein, 3-helical bundle	IPR014352	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	FERM central domain	IPR019748	-	-
Sma3	Band 4.1 domain	IPR019749	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G22610.1	Di-glucose binding protein with Kinesin motor domain chr2:9599550-9604626 FORWARD LENGTH=1083	53%
RefSeq	Arabidopsis thaliana	NP_179846.3	Di-glucose binding protein with Kinesin motor domain [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002317602.1	predicted protein [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACB2

Fln msg: your sequence is longer than subject: 976 - 509

Fln protein: MELITPPTPEEVNEVINNHHSKQEEEEEEVLQQPIIKIHEPSWVIDLPQQPSTDISGSSDGHPVIDAYDNDQMSIIARKCVSEQHERRVQELTKDCEQAKNECHEAWMCLRDSTRQLEELRNDHHFKSLQVNSLEGRLTELTELQEKHEKDKKLWVSSMQDLNAKIQVLRGDYHKLSEEARSNSFPDISGITSAMESLSVQYEDLKKKYIEESKERKQLYNELLELKGNIRVFCRCRPLSAEEIATGASSIVEFDKSKDNELAININSASKKNFKFDRVFTPEDNQEDVFLDTAPVVVSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNFRTLEELFRVAEERKGQYNYDISVSVLEVYNEQIRDLLASPAQQGQHAKKLDIKQVAEGVQHVPGLVEAKVQNMNEVWEVLQTGSAARAVGSTNANELSSRSHCILSVMVTAKSLVNGQFTTSKLWLVDLAGSERIAKTDVHGERLKEAQYINKSLSALGDVISALTTKSSHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPHENDTGETLCSLNFASRVRGLELGPTRRQQDAGEVFKYKQMIERIRQDGKEVKKMEESLQNMEIKFKGREQMCRNLQEKIKELEAQLAKERKARAICETKLRDHQRHSEKLPEKKAPLFRESNSSRSVRGRTPLSKDLTNLPKQGLTLDRNIKQHDGRSFMKMNMIESFASGTPLNKENEGKSTVIERKKGRFSMCALPPRSSVLPSARRISMIPAPPLRSAIFKTEAAVDHSGRNDRIARRTSMSTLSRRTSSIPMPRRTSMAVLPMRRNEVSTSELQLPAHQFALSPAEEKCGKNNIPYHDSGAPHTSTPVSLRGVKISHALDRFRGTIHSKVRLNSPLVKASNALQEINQKQENHTTETDDNFMVASSLSLDQKPQPNEINRLRHLSNMRTWGSHSAAGARAQRVLCGNKTSSRSIMEDRENETRSGQLESGDILSNR*

Protein Length: 977

Fln nts: GGAACAACAAATATTTGTGCTGTGCTGTGCAGTGTACTGACGGATTTACCATTAAAAA_-_ATGGAGCTCATCACCCCTCCCACACCAGAAGAAGTGAACGAAGTAATTAACAATCATCATTCAAAGCAAGAAGAAGAAGAGGAGGAGGTATTACAGCAGCCCATCATCAAAATTCATGAACCTTCCTGGGTTATAGATCTCCCGCAGCAGCCCTCTACAGATATCTCCGGCTCTTCAGATGGACACCCAGTTATTGATGCATACGACAATGACCAGATGTCAATCATAGCTCGGAAATGTGTGTCTGAGCAACACGAAAGAAGGGTTCAAGAGCTCACCAAAGACTGCGAGCAGGCAAAGAACGAATGCCATGAGGCCTGGATGTGCCTGCGAGACTCCACTCGCCAACTCGAAGAGCTCAGAAATGACCACCATTTCAAATCCTTACAGGTCAATTCTCTAGAGGGCCGACTGACTGAGTTAACAGAGCTTCAAGAAAAACACGAGAAGGATAAGAAGTTGTGGGTGTCCTCAATGCAAGACTTGAATGCTAAAATCCAGGTCTTAAGGGGTGATTATCATAAGCTTTCAGAAGAGGCACGTTCCAATTCCTTTCCTGATATCAGTGGCATAACCTCAGCCATGGAGTCACTGAGTGTACAATATGAGGATCTCAAGAAGAAGTACATTGAAGAGAGTAAGGAACGAAAGCAGCTTTACAATGAATTGTTGGAGCTGAAAGGAAACATCAGGGTTTTCTGTAGGTGTCGCCCATTGAGTGCAGAAGAAATTGCAACAGGAGCTTCTTCTATAGTGGAATTTGATAAATCTAAAGACAATGAACTTGCTATAAATATTAATAGTGCTTCAAAAAAGAACTTCAAATTTGATCGTGTTTTCACTCCAGAAGATAATCAGGAGGATGTCTTTCTGGATACTGCCCCAGTCGTTGTCTCTGTTTTAGATGGGTACAATGTTTGCATCTTTGCATATGGGCAAACTGGAACTGGAAAAACATTTACAATGGAGGGTACCCCAGAAAATAGGGGAGTTAACTTTCGTACATTGGAGGAACTTTTTCGAGTGGCTGAGGAAAGAAAGGGACAATACAATTATGATATCTCAGTGAGCGTATTGGAAGTTTACAATGAGCAAATTCGTGATCTTCTTGCATCCCCAGCACAGCAAGGACAACATGCAAAGAAGTTGGATATAAAACAGGTGGCTGAAGGGGTTCAACATGTGCCAGGACTTGTGGAAGCAAAAGTGCAGAACATGAATGAGGTTTGGGAAGTGTTGCAAACTGGAAGTGCTGCTAGAGCTGTTGGCTCCACGAATGCAAATGAACTTAGTAGTCGTTCACACTGTATACTTAGCGTGATGGTGACAGCGAAGAGCTTAGTCAATGGGCAGTTCACAACGAGTAAGCTGTGGCTGGTTGATCTTGCAGGCAGTGAGAGAATAGCAAAAACTGATGTCCACGGGGAGCGTCTAAAAGAAGCACAATATATCAATAAGTCCCTATCTGCTCTCGGTGATGTCATATCTGCCCTTACAACCAAAAGCAGTCATATACCATACAGGAACTCTAAGCTTACGCATTTGCTGCAAGATTCATTGGGAGGAGATTCAAAGACTCTGATGTTTGTACAAATTAGTCCCCATGAAAATGACACGGGAGAAACTCTGTGCTCACTGAACTTTGCCAGCAGAGTTCGAGGATTAGAGCTTGGTCCTACTCGGAGACAGCAAGATGCTGGTGAAGTTTTCAAGTATAAACAGATGATTGAGAGGATTAGACAGGATGGAAAAGAGGTAAAGAAGATGGAAGAGAGCTTGCAAAATATGGAGATCAAATTCAAGGGAAGGGAACAGATGTGCAGAAATCTTCAGGAGAAGATAAAAGAACTTGAAGCTCAACTGGCAAAGGAGAGGAAAGCTCGGGCTATATGTGAGACCAAGCTGAGAGACCATCAGCGCCATTCAGAAAAGTTGCCTGAGAAGAAAGCCCCACTATTTCGTGAGTCCAATAGTTCGAGGAGTGTTAGAGGAAGAACCCCTTTGAGCAAGGATCTTACTAATCTGCCAAAACAGGGTTTAACTTTGGACCGCAATATAAAGCAACACGATGGTAGATCATTTATGAAGATGAACATGATTGAATCCTTTGCTAGTGGCACTCCTTTAAATAAAGAAAATGAAGGCAAATCAACTGTAATTGAACGCAAGAAAGGGCGGTTTTCCATGTGTGCACTACCCCCTAGATCTTCTGTACTTCCGTCTGCAAGAAGAATATCAATGATCCCCGCTCCCCCATTACGAAGCGCCATATTTAAAACTGAAGCAGCGGTTGATCATTCTGGCCGAAATGACAGAATAGCTCGAAGAACTTCAATGAGTACTTTGTCTCGGAGAACTTCTTCCATTCCAATGCCAAGAAGAACTTCCATGGCTGTCCTACCAATGAGAAGGAATGAGGTGTCAACATCTGAACTCCAGCTACCTGCCCACCAATTTGCCTTATCACCAGCGGAGGAGAAATGTGGAAAAAATAACATCCCATATCACGACTCTGGTGCACCCCATACCTCAACTCCTGTTAGTTTGCGAGGGGTAAAAATTTCACATGCTTTAGATAGATTTCGTGGCACTATTCACAGTAAGGTTCGCCTCAATTCTCCTTTGGTCAAAGCATCCAATGCCCTTCAAGAAATTAACCAGAAGCAAGAAAACCACACAACTGAAACTGATGATAATTTCATGGTTGCTTCATCTTTGTCATTGGATCAGAAGCCACAACCAAATGAGATTAACCGTCTCAGGCATTTGAGCAATATGAGAACATGGGGAAGTCATTCAGCTGCAGGGGCTCGTGCTCAAAGGGTTTTGTGTGGAAACAAGACAAGCTCGAGGTCTATTATGGAAGACAGGGAAAATGAAACAAGGAGTGGGCAACTAGAAAGTGGAGATATTTTATCCAACAGATGA___AAGTAATCCTAGTTATAAGGAAGCTAAATAATTTCTATTCTAGACGTATTTGATGACTATTTGAGTATGCAAGGTCTTTGTCCAGTTGGACACGGGTTGACAGGAAGGAAATCTGGCCTGAAAGGAAACATGCAGATGGTGCCTTTTGTAGGTTCTTGTATTTTCTTTCAATGTAACACAGTTAATATGTATTATAGTTATAATGTCGCCTGTAAAACACAACTTTATCATGCCTTCCCCCTAATTTTATTGGCATCCAGGGCAATAAAGAGCTGTAAAATTTTCAATTTTACTCCAAGTTTCTATAACTCGTAAAACATAGAGAGTTTCTGT

Fln Alignment:

Contig1047___QYNYDISVSVLEVYNEQIRDLLASPAQQGQHAKKLDIKQVAEGVQHVPGLVEAKVQNMNEVWEVLQTGSAARAVGSTNANELSSRSHCILSVMVT----AKSLVNGQFTTSKLWLVDLAGSERIAKTDVHGERLK-EAQYINKSLSALGDVISALTTKSSHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPHENDTGETLCSLNFASRVRGL
D5ACB2______________EQGFRLWLSFFEIYGGKLYDLLGD-------RRKLCMREDARQQVCIVGLQEFEVSDIQCVKEYIEKGNGARSTGSTGANEESSRSHAILQLTIKKHGEGKELKGGR-TVGKLSFIDLAGSERGADTTDNDRQTRMEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCVSPNSGSCEHTLNTLRYADRVKGL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
2684			83	16	0.994512
3073	42			57	1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
16	30	TGTGC TGTGC TGTGC	15
126	138	AAG AAG AAG AAG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain