SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1045

Length: 1972 nt

UniGene Fasta

>sp_v3.0_unigene1045
AGTTCTTCGACCGACATAAGGTTGGCGAGCTGACAGGATTGCTCACAACTGACTTGGGTGCTCTCAAGGATGTTGTGAATGAAAATATTTCTAGAGATCGTGGTCTTAGAGCATTTTCAGAGTTGATAGGAACATTGGTTATACTTTTTTCATTGTCAGCTCAGCTTGCTCCACTCTTTGGCGTGCTCATGCTTTCTGTATCAATTCTTGTGGCTGTATATAAACGCACCACAGTACCTATCTTCAAAGCACACGGGCAGGCTCAAGCACAGATTTCTGATTGTGCAGCTGAAACTTTCTCGGCAATTCGTACAGTGAGATCCTTTGGTGGAGAAGTGAGGCAAATGTTCACGTTTTCTGAGCAGGTTCATTCTTATCAGAAAAGTGGAATTAAACTGGGATGGATGAAATCTGTTAATGAATCATTGACCAGAATCATGGTTTACGTCTCATTGATGGCTCTGTACAGTGTTGGTGGAAGCAAAGTAAAAATGGGTGAACTGTCAGTTGGAACCATGGCATCTTTTATCGGTTATACTTTCATGTTGACATTTGCAGTCCAAGGGGTTGTAAACACACTGGGTGATATTCGCGGGATGCTTGCTGCAGTTGATCGGATCAATTCTGTCATATCTTCGACAGAAATTGATGAGCCATTGGCTTTTGGATTAGAAAGACAGGCTCATGGTGAACATGTAAGTTCCAAGGAGTATGAAAATGCAGAAACTGCTGACAATGTTTCTGACATGAATTTCAAGATTAGACATTTCATGTCAGGGCTGAAGTCGACTTCTAGTGTTCGTGAGCTAGCTTGGGCTGGAGATGTTGCTCTTGAAGATGTATACTTTGCTTACCCACTAAGGCCTGATGCCCAAATCTTGAATGGGTTCACTCTTAACTTGAACCGTGGAACAGTAACAGCTCTTGTGGGTTCAAGTGGTGCGGGAAAAAGTACAGTTGTGCAGCTCTTGGCACGCTTCTATGAGCCAGTACAAGGTCGAATAACAATAGCTGGAGAAGATGTGCGGATGTTTGACAAAACTGAATGGGCACGTACTGTTTCCATTGTGAACCAGGAGCCAGTGTTATTTGCAATGTCAGTTGCAGAAAATATTGCCTATGGATTACCAAATGAGCAAATTGCACAAGAAGATATTGTTTCAGTTGCTAAAGCTGCCAATGCCCATGATTTCATCATTTCTCTTCCACAGGGATATGACACACTAGTGGGCGAACGTGGAAGCTTGTTAAGTGGAGGACAACGTCAGAGAGTTGCCATAGCGAGAGCTCTGTTGAAGAATGCTCCACTATTGATACTTGATGAGGCAACCAGTGCTTTGGATGCTGTTAGTGAGCGCCTTGTACAAGATGCCCTTGACCGTTTGATGAAGGGACGAACTACTTTGGTGATTGCACATAGGCTGAGTACTGTGCAAAATGCTGATCGAATAGCTGTAGTTTTAGAGGGAAAAGTGGTTGAATTGGGTCGCCATTCTGAGTTGTTGGCCCAAGGAGGCCTCTATTCTTCGTTGGTGGATACTCAAAGGCTTGCCTTTGAGTAATTTTATTTCAACATAGTTGATTTATGTTCTGCTGTAGATTATCCTTCATGAACATTCTTAAAATCTCATAAACACTAGGAACTTAATATGAAAAGCATGATTGAATTCTTTTCCTGAGTTTTTTGTTTCAATGGCTGTGATAGTTACTGTCCAGACTCCACACACAATGCATGAACTCATGTCAAATAGTTGAGACCAATATCCAAGCATGTTGGACACCAAAACCCCTAAATACACGTAATGGAGGTCACTGGTTTGTCTCTCTTGATCCTCTCAAGGCAAAGTGCTTGGAACTTAGGCATCACCTGTTTTATACTTAGTAACACTAAGTACCATCCCCGGAATGAGGGGATTTCCCTAGGAGTTTCCCAGCTTTCTCTCAACTTAAGTGGCTTTATTACTCTCAACAA

Ace file of the UniGene sp_v3.0_unigene1045

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABC transporter B family member 28 n=4 Tax=Arabidopsis thaliana RepID=AB28B_ARATH	-	-	0.0	68%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	0.0	35%

Source	Gene names
Sma3	At4g25450; CHLREDRAFT_100930; GSVIVT00007416001; GSVIVT00015726001; GSVIVT00015727001; GSVIVT00015927001; GSVIVT00027397001; GSVIVT00035707001; M7J2.180; MICPUCDRAFT_1092; MICPUN_87670; NAP8; Os01g0695700; Os01g0695800; Os07g0464600; OsI_06988; OsI_25916;

Source	GOs	Term	Type	Identity
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G25450.1	ATNAP8, NAP8 non-intrinsic ABC protein 8 chr4:13009845-13013912 REVERSE LENGTH=714	70%
RefSeq	Arabidopsis thaliana	NP_001078446.1	ABC transporter B family member 28 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002321879.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 547 aas, your sequence is shorter than subject: 520 - 1316

Fln protein: FFDRHKVGELTGLLTTDLGALKDVVNENISRDRGLRAFSELIGTLVILFSLSAQLAPLFGVLMLSVSILVAVYKRTTVPIFKAHGQAQAQISDCAAETFSAIRTVRSFGGEVRQMFTFSEQVHSYQKSGIKLGWMKSVNESLTRIMVYVSLMALYSVGGSKVKMGELSVGTMASFIGYTFMLTFAVQGVVNTLGDIRGMLAAVDRINSVISSTEIDEPLAFGLERQAHGEHVSSKEYENAETADNVSDMNFKIRHFMSGLKSTSSVRELAWAGDVALEDVYFAYPLRPDAQILNGFTLNLNRGTVTALVGSSGAGKSTVVQLLARFYEPVQGRITIAGEDVRMFDKTEWARTVSIVNQEPVLFAMSVAENIAYGLPNEQIAQEDIVSVAKAANAHDFIISLPQGYDTLVGERGSLLSGGQRQRVAIARALLKNAPLLILDEATSALDAVSERLVQDALDRLMKGRTTLVIAHRLSTVQNADRIAVVLEGKVVELGRHSELLAQGGLYSSLVDTQRLAFE*

Protein Length: 521

Fln nts: AGTTCTTCGACCGACATAAGGTTGGCGAGCTGACAGGATTGCTCACAACTGACTTGGGTGCTCTCAAGGATGTTGTGAATGAAAATATTTCTAGAGATCGTGGTCTTAGAGCATTTTCAGAGTTGATAGGAACATTGGTTATACTTTTTTCATTGTCAGCTCAGCTTGCTCCACTCTTTGGCGTGCTCATGCTTTCTGTATCAATTCTTGTGGCTGTATATAAACGCACCACAGTACCTATCTTCAAAGCACACGGGCAGGCTCAAGCACAGATTTCTGATTGTGCAGCTGAAACTTTCTCGGCAATTCGTACAGTGAGATCCTTTGGTGGAGAAGTGAGGCAAATGTTCACGTTTTCTGAGCAGGTTCATTCTTATCAGAAAAGTGGAATTAAACTGGGATGGATGAAATCTGTTAATGAATCATTGACCAGAATCATGGTTTACGTCTCATTGATGGCTCTGTACAGTGTTGGTGGAAGCAAAGTAAAAATGGGTGAACTGTCAGTTGGAACCATGGCATCTTTTATCGGTTATACTTTCATGTTGACATTTGCAGTCCAAGGGGTTGTAAACACACTGGGTGATATTCGCGGGATGCTTGCTGCAGTTGATCGGATCAATTCTGTCATATCTTCGACAGAAATTGATGAGCCATTGGCTTTTGGATTAGAAAGACAGGCTCATGGTGAACATGTAAGTTCCAAGGAGTATGAAAATGCAGAAACTGCTGACAATGTTTCTGACATGAATTTCAAGATTAGACATTTCATGTCAGGGCTGAAGTCGACTTCTAGTGTTCGTGAGCTAGCTTGGGCTGGAGATGTTGCTCTTGAAGATGTATACTTTGCTTACCCACTAAGGCCTGATGCCCAAATCTTGAATGGGTTCACTCTTAACTTGAACCGTGGAACAGTAACAGCTCTTGTGGGTTCAAGTGGTGCGGGAAAAAGTACAGTTGTGCAGCTCTTGGCACGCTTCTATGAGCCAGTACAAGGTCGAATAACAATAGCTGGAGAAGATGTGCGGATGTTTGACAAAACTGAATGGGCACGTACTGTTTCCATTGTGAACCAGGAGCCAGTGTTATTTGCAATGTCAGTTGCAGAAAATATTGCCTATGGATTACCAAATGAGCAAATTGCACAAGAAGATATTGTTTCAGTTGCTAAAGCTGCCAATGCCCATGATTTCATCATTTCTCTTCCACAGGGATATGACACACTAGTGGGCGAACGTGGAAGCTTGTTAAGTGGAGGACAACGTCAGAGAGTTGCCATAGCGAGAGCTCTGTTGAAGAATGCTCCACTATTGATACTTGATGAGGCAACCAGTGCTTTGGATGCTGTTAGTGAGCGCCTTGTACAAGATGCCCTTGACCGTTTGATGAAGGGACGAACTACTTTGGTGATTGCACATAGGCTGAGTACTGTGCAAAATGCTGATCGAATAGCTGTAGTTTTAGAGGGAAAAGTGGTTGAATTGGGTCGCCATTCTGAGTTGTTGGCCCAAGGAGGCCTCTATTCTTCGTTGGTGGATACTCAAAGGCTTGCCTTTGAGTAATTTTATTTCAACATAGTTGATTTATGTTCTGCTGTAGATTATCCTTCATGAACATTCTTAAAATCTCATAAACACTAGGAACTTAATATGAAAAGCATGATTGAATTCTTTTCCTGAGTTTTTTGTTTCAATGGCTGTGATAGTTACTGTCCAGACTCCACACACAATGCATGAACTCATGTCAAATAGTTGAGACCAATATCCAAGCATGTTGGACACCAAAACCCCTAAATACACGTAATGGAGGTCACTGGTTTGTCTCTCTTGATCCTCTCAAGGCAAAGTGCTTGGAACTTAGGCATCACCTGTTTTATACTTAGTAACACTAAGTACCATCCCCGGAATGAGGGGATTTCCCTAGGAGTTTCCCAGCTTTCTCTCAACTTAAGTGGCTTTATTACTCTCAACAA

Fln Alignment:

Contig1045___KDVVNENISRDRGLRAFSELIGTLVILFSLSAQLAPLFGVLMLSVSILVAVYKRTTVPIFKAHG----QAQAQISDCAAETFSAIRTVRSFGGEVRQMFTFSEQVHSYQKSGIKLGWMKSVNESLTRIMVYVSLMALYSVGGSKVKMGELSVGTMASFIGYTFMLTFAVQGVVN---TLGDIRGMLAAVDRINSVISSTEIDEPLAFGLERQAHGEHVSSKEYENAETADN--VSDMNFKIRHFMSGLKSTSSVRELAWAGDVALEDVYFAYPLRPDAQILNGFTLNLNRGTVTALVGSSGAGKSTVVQLLARFYEPVQGRITIAGEDVRMFDKTEWART-VSIVNQEPVLFAMSVAENIAYGLPNEQIAQEDIVSVAKAANAHDFIISLPQGYDTLVGERGSLLSGGQRQRVAIARALLKNAPLLILDEATSALDAVSERLVQDALDRLMKGRTTLVIAHRLSTVQNADRIAVVLEGKVVELGRHSELLAQ-GGLYSSLVDTQ
E6Y0T0______________QDAMGEKVGK------FIQFITTFIAGFVIAFIKGWKLSLVMLSMIPLLVVSGGSMAMIISKMSSRGQQAYSEAANIVEQTIGSIRMVASFTGE-------KKSIEGYNKS---------------LAIAYNAITQQGLVAG--VGLGSV---LFIMFCGYALALWYGSRLILDGSYTGGDVINVIFAVLMGGMSLGQTS-PSLNAFSAGRAA--------AYKMFETIDRKPVIDVFDKSGLVLEDIQ-----------GDIELKDVRFTYPARPDVQVFSGFSLEIPSGTTAALVGESGSGKSTVISLVERFYDPQAGEVLIDGINIKKF-QLKWIRQKIGLVSQEPVLFGTTIKENLLYGKDGATL--EEIKAAAELANAAKFINKLPQGFDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDTESERVVQEALDRIMVNRTTVIVAHRLTTVRNADMIAVVQRGSIVEKGSHSQLITNPSGAYSQLIHLQ

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1426	12		87		0.992554
1490		87		12	0.992554
1594		75		25	1.0
1677	20			80	0.995493
1678	20		80		0.995493
1681	20		20	60	0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain