SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1037

Length: 1372 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1037

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb\|AAC98030.1\| ESTs gb\|234051 and gb\|F13722 come from this gene [Arabidopsis thaliana] gb\|AAM62726.1\| unknown [Arabidopsis thaliana] gb\|AAO22770.1\| unknown protein [Arabidopsis	-	-	0.0	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	OB-fold nucleic acid binding domain containing protein	-	-	6.005e-15	-

Source	Gene names
Sma3	At1g03810; At1g10590; At1g23750; At2g33845; At4g28440; CHLREDRAFT_79613; F11M21.26; F20O9.120; F5O8.30; GSVIVT00002689001; GSVIVT00003057001; GSVIVT00010232001; GSVIVT00012028001; GSVIVT00018634001; GSVIVT00020747001; GSVIVT00031711001; GSVIVT00033528001;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleic acid binding, OB-fold, tRNA/helicase-type	IPR004365	-	0.0	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G23750.1	Nucleic acid-binding, OB-fold-like protein chr1:8400638-8401171 FORWARD LENGTH=137	70%
RefSeq	Arabidopsis thaliana	NP_564202.1	OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002314618.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK64

Fln msg:

Fln protein: MASTNANLRKPVFTKVDQLTPGSSGHNLVVKVLSAQLVLEKGRPDAPIRQMRIAECLVGDETGTILFTARNDQVDIMKEGTTIILRNAKIDMFRGSMRLAVNKWGRIEATEPADFVVKEDNNLSLVEYELVDVPED*

Protein Length: 138

Fln nts: GGACGAAAGGCGAGGGAAACCATTTAGCGTTTTCGCTTCTCAATGCCTTGATAGGAGAGCGGATTCGATCATCTTGCTGTGGCTACAGTCAAAGTTTCGCGAATTTTCATTCGAATTAACGGCCATCGTTTCAGACGTGTATTGCATTGTGTATAACTTAAAAGGAAA_-_ATGGCTTCTACAAATGCAAATCTCAGGAAGCCTGTTTTCACAAAGGTTGACCAACTGACACCTGGGTCATCTGGGCACAATCTGGTTGTGAAAGTGCTGAGCGCACAACTTGTTCTTGAAAAGGGCCGACCTGATGCTCCGATCCGTCAGATGCGTATTGCGGAGTGCCTAGTAGGAGATGAAACTGGGACAATTCTCTTCACTGCAAGAAATGATCAAGTTGATATCATGAAGGAAGGAACTACAATTATCTTGCGTAATGCGAAGATTGATATGTTTAGGGGTTCAATGAGACTTGCTGTTAACAAGTGGGGCAGGATTGAGGCAACCGAGCCTGCAGATTTCGTTGTGAAGGAAGACAACAATCTTTCACTTGTTGAGTATGAGTTGGTTGATGTGCCAGAAGATTAA___ACTTTTTGAGCTGAGCCAGTAGCTCTCCTGGCATTACAGTTATGTAATAACACTTCAGAGTGATATCAGGTGGTATTTTTTAATGTAAGGAAGATGTGGAATTCTGGGTATTATCAGCATAATTCACTCTTGGTCACACTGAGACAGTGAAATCATGGAGCAATATGTCTTCACACTAGTTTGGGAGGATTTTCCAGGTCCTCATTTTGTGAATTTCAAAGCATTATCGAAGGACCTACATAGTTGCCTTAATGCCAACAAGCTACCTTGTGAGAGATGCAAAACGGGTGGCTTTTTTGCTGAAATAAAATGTAGTAAACATAAACGGCAGGTTATCTTTTTGTAGCGGAAGTGGCATATTTTCACTGCAGTATTTCGGGCAGGTGCCCTTTAGGCATTCAATGTGCTTGAAAATCGATGAAATGTATTGCAGGCTTAACTTTCATTAGCTGAGCCCATAACTGCTTAGTGGAAAACTGACTTTCACAATTTAAATTGCAGTGCTGCTGGAATCCTAGCCACTAGTTTCTGTTGGCTCTGGAGTTGGAACACTTTCTGCAATTGATGGGCCTGTTATGAAGGGTTGGTTCTGTGTTTTCCTTTCTTAAGATATGGAATACATTATGTAAGTAATAAGAACTTTGATGCTTTTCATTATAGTGTGCCCGGTAATCTCACTATTCTGAATGACGATGCAAAAAGAGTGTTCACTTGACTTGAAATTTGAAATCCTCTTTTTTTTTTTTGCGAATTGGGTGTCTTTTAACACTTTTAACAAGCTATAAATTTGTTT

Fln Alignment:

Contig1037___ASTNANLRKPVFTKVDQLTPGSSGHNLVVKVLSAQLVLEKGRPDAPIRQMRIAECLVGDETGTILFTARNDQVDIMKEGTTIILRNAKIDMFRGSMRLAVNKWGRIEATEPADFVVKEDNNLSLVEYELVDVPED
A9NK64______________SNPNANLRKPVFTKIDQLRPGTSGHNLIVKVTSAKIVLQKGRPDSQVRQMRIAECLIGDETGIVIFTARNEQVDLMKEGSTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPAEFSVKEENNLSLVEYELVNVQED

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1064		96	3		0.986325
1068	94		1		0.924724
1103	96		3		0.98536
1160	96		3		0.99245
1232		5		94	0.999995
1324			25	75	0.996473
1325		25		75	0.996473
1329			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain