SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1013

Length: 2322 nt

UniGene Fasta

>sp_v3.0_unigene1013
CACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGGCGAATATATTCGCAGACATTTGTCTTTCAGATTATAACTATTCAGAACCAGGCAACGGAAACATGTCTCCATCAAAAGTTACTTACAGCGGAATTGATTGAATCAGCCGGAGGCGTTAGGGCTTTGACTGAGGTGAGGGCGCGGAGTCCGAGGAAGGAATCCGGACGTTTTCGTGTTTTGTTTGTATATAAATACGATCCAGGGATATAGAGTACTGTCAATATGCGGAGATTTGTAGCCGATAGATTTAGGAGGATAGCTGCCCAAGCAATGGCAAACAACTTTTCTTCATCTTCTAATGCTAACAAGAAATGTCTCGGGGGATATCCTTCTTCCCCGCTTACCCTCGAGACTATCAATCCCAAGGTTTTGAAATGTGAATATGCAGTTCGTGGAGCAATTGTTGCACAGGCCCAGAGGCTACAAGAGGAATTGCAAACAAAGCAATCTTCACTTCCTTTTGATGAGATTATTTACTGTAATATTGGCAATCCACAATCCTTAGGTCAACAGCCTGTAACATTTTTCCGAGAGGTGCTAGCTTTATGTGACCATCCAGCTCTTTTGGACAAAGATGAAACACATGGCATCTTTAGTTCTGATTCCATATCGAGGGCATGGCAAATTCTAGATGGCATTCCAGGAAGAGCTACTGGAGCTTACAGTCACAGTCAGGGTATCAAGGCATTACGTGATGCAATTGCTGCTGGTATTGCTGAACGTGATGGTTTTCCATCCAATTCAGAGGACCTTTTTTTGACTGATGGTGCAAGTCCTGGGGTTCATATGATGATGCAACTTCTTATAAGGTCAGAGAAGGATGGAATTCTTTGCCCAATTCCGCAGTACCCACTTTACTCTGCATCCATTGCTCTTCATGGTGGGACCTTGGTTCCATACTACCTTAATGAGGCAACAGGATGGGGTTTAGAAATTTCCGAGGTTAAACAACAACTAGAAGCAGCACGCTTAAATGGTATCGATGTTCGGGCTATTGTCATCATAAATCCAGGAAATCCTACAGGTCAGGTTCTTTCAAAGGAAAATCAAGTGGAGATTGTGGAGTTTTGTAAGAATGAAGGTTTACTTCTCCTTGCTGATGAGGTTTATCAGGAAAACATTTATGCAGATAACAAGGAATTCCACTCTTTCAAAAAGATAGCGAGGAGCATGGGTTATGGTGAAAAGGACATTTCTCTTGTTTCTTTCCAGTCAATTTCCAAAGGTTATTATGGCGAGTGTGGAAAAAGAGGTGGATATATGGAGGTAACTGGAATTGACAACGATATCAAGGATCAACTGTATAAAGTGGCATCTGTGAATCTTTGTTCCAACATTTCTGGTCAGATACTTGCAAGTCTTGTAATGAATCCCCCAAAGAGTGGAGACGAATCATTTGAATTGTTCTTTGCAGAGAGGGATAGTATTCTTTCATCTCTAGCAAGGCGTGCCAAGACCTTAGTGGATGCATTGAACCAGTTAGAAGGTGTTACCTGCAATGAAGCAGAAGGTGCCATGTATGTCTTCCCTTGCATTCACCTACCACAAAAAGCAATCAAGGCTGCAGAAGCAGTAAACATGGTGCCAGATGCTTTCTATTGTCAGAGATTATTGGAGGCCACAGGCATTGTGGTTGTTGCAGGTTCCGGATTTGGTCAGGTACCTGGCACGTGGCATTTTCGAAGCACAATTTTGCCCCAAGAGGATAAAATGCCAGCCATAGTTTCTCGCTTGACAACATTCCACCAGAAGTTTATGGAAGAATTTCGTGACTAAGCATATTTAAATATATGTTTACCCGTGCTTCAAGTTAAATCAAAAGTACTACGTGATATGAGTTGCATGAAACAGTGCTTATTTTATGTCGGGCAACATTTAAAACATTATCTATCCAAGCTCTCTCTCTCATAACAGAATTGCTGTTTCTTCAATAAACTGGGTTGATATCATGATATATTGGTATTCACATCAATTTCAACTAGTTTGCAGGTTGGTAGTGCTGCTGGATTCAAATCCAAGGTGATATTGTATTAATGATATGAATTTTATTGAGCATTTTGCAAAATATCACACTTTCTAGAAATTGTTTTTCATCTACTAAAGAATAGCATTGGTTGCAAGTTGGCACAACCCAACCAATGCCATGGAATAGTTGGAAGTTTTCTATAAAACTGAAGGTGCAGGTACAGTAACAAGTTATTTGTATTTTCCAAGTGAAATTCTAGGTGACATGTGAAGACCTCGGGCACTGAGTTACACTAGGCTTGATAATGGCTCGACT

Ace file of the UniGene sp_v3.0_unigene1013

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative alanine aminotransferase [Arabidopsis thaliana]	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative alanine aminotransferase	-	-	-

Source	Gene names
Sma3	At1g17290;

Source	GOs	Term	Type	Identity
Sma3	1-aminocyclopropane-1-carboxylate synthase activity	GO:0016847	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	transaminase activity	GO:0008483	Molecular Function	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	1-aminocyclopropane-1-carboxylate synthase	IPR001176	-	-
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G17290.1	AlaAT1 alanine aminotransferas chr1:5922771-5926093 FORWARD LENGTH=543	78%
RefSeq	Arabidopsis thaliana	NP_173173.3	alanine aminotransferase [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002304255.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACH7

Fln msg: your sequence is longer than subject: 518 - 329

Fln protein: MRRFVADRFRRIAAQAMANNFSSSSNANKKCLGGYPSSPLTLETINPKVLKCEYAVRGAIVAQAQRLQEELQTKQSSLPFDEIIYCNIGNPQSLGQQPVTFFREVLALCDHPALLDKDETHGIFSSDSISRAWQILDGIPGRATGAYSHSQGIKALRDAIAAGIAERDGFPSNSEDLFLTDGASPGVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLNEATGWGLEISEVKQQLEAARLNGIDVRAIVIINPGNPTGQVLSKENQVEIVEFCKNEGLLLLADEVYQENIYADNKEFHSFKKIARSMGYGEKDISLVSFQSISKGYYGECGKRGGYMEVTGIDNDIKDQLYKVASVNLCSNISGQILASLVMNPPKSGDESFELFFAERDSILSSLARRAKTLVDALNQLEGVTCNEAEGAMYVFPCIHLPQKAIKAAEAVNMVPDAFYCQRLLEATGIVVVAGSGFGQVPGTWHFRSTILPQEDKMPAIVSRLTTFHQKFMEEFRD*

Protein Length: 519

Fln nts: CACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGGCGAATATATTCGCAGACATTTGTCTTTCAGATTATAACTATTCAGAACCAGGCAACGGAAACATGTCTCCATCAAAAGTTACTTACAGCGGAATTGATTGAATCAGCCGGAGGCGTTAGGGCTTTGACTGAGGTGAGGGCGCGGAGTCCGAGGAAGGAATCCGGACGTTTTCGTGTTTTGTTTGTATATAAATACGATCCAGGGATATAGAGTACTGTCAAT_-_ATGCGGAGATTTGTAGCCGATAGATTTAGGAGGATAGCTGCCCAAGCAATGGCAAACAACTTTTCTTCATCTTCTAATGCTAACAAGAAATGTCTCGGGGGATATCCTTCTTCCCCGCTTACCCTCGAGACTATCAATCCCAAGGTTTTGAAATGTGAATATGCAGTTCGTGGAGCAATTGTTGCACAGGCCCAGAGGCTACAAGAGGAATTGCAAACAAAGCAATCTTCACTTCCTTTTGATGAGATTATTTACTGTAATATTGGCAATCCACAATCCTTAGGTCAACAGCCTGTAACATTTTTCCGAGAGGTGCTAGCTTTATGTGACCATCCAGCTCTTTTGGACAAAGATGAAACACATGGCATCTTTAGTTCTGATTCCATATCGAGGGCATGGCAAATTCTAGATGGCATTCCAGGAAGAGCTACTGGAGCTTACAGTCACAGTCAGGGTATCAAGGCATTACGTGATGCAATTGCTGCTGGTATTGCTGAACGTGATGGTTTTCCATCCAATTCAGAGGACCTTTTTTTGACTGATGGTGCAAGTCCTGGGGTTCATATGATGATGCAACTTCTTATAAGGTCAGAGAAGGATGGAATTCTTTGCCCAATTCCGCAGTACCCACTTTACTCTGCATCCATTGCTCTTCATGGTGGGACCTTGGTTCCATACTACCTTAATGAGGCAACAGGATGGGGTTTAGAAATTTCCGAGGTTAAACAACAACTAGAAGCAGCACGCTTAAATGGTATCGATGTTCGGGCTATTGTCATCATAAATCCAGGAAATCCTACAGGTCAGGTTCTTTCAAAGGAAAATCAAGTGGAGATTGTGGAGTTTTGTAAGAATGAAGGTTTACTTCTCCTTGCTGATGAGGTTTATCAGGAAAACATTTATGCAGATAACAAGGAATTCCACTCTTTCAAAAAGATAGCGAGGAGCATGGGTTATGGTGAAAAGGACATTTCTCTTGTTTCTTTCCAGTCAATTTCCAAAGGTTATTATGGCGAGTGTGGAAAAAGAGGTGGATATATGGAGGTAACTGGAATTGACAACGATATCAAGGATCAACTGTATAAAGTGGCATCTGTGAATCTTTGTTCCAACATTTCTGGTCAGATACTTGCAAGTCTTGTAATGAATCCCCCAAAGAGTGGAGACGAATCATTTGAATTGTTCTTTGCAGAGAGGGATAGTATTCTTTCATCTCTAGCAAGGCGTGCCAAGACCTTAGTGGATGCATTGAACCAGTTAGAAGGTGTTACCTGCAATGAAGCAGAAGGTGCCATGTATGTCTTCCCTTGCATTCACCTACCACAAAAAGCAATCAAGGCTGCAGAAGCAGTAAACATGGTGCCAGATGCTTTCTATTGTCAGAGATTATTGGAGGCCACAGGCATTGTGGTTGTTGCAGGTTCCGGATTTGGTCAGGTACCTGGCACGTGGCATTTTCGAAGCACAATTTTGCCCCAAGAGGATAAAATGCCAGCCATAGTTTCTCGCTTGACAACATTCCACCAGAAGTTTATGGAAGAATTTCGTGACTAA___GCATATTTAAATATATGTTTACCCGTGCTTCAAGTTAAATCAAAAGTACTACGTGATATGAGTTGCATGAAACAGTGCTTATTTTATGTCGGGCAACATTTAAAACATTATCTATCCAAGCTCTCTCTCTCATAACAGAATTGCTGTTTCTTCAATAAACTGGGTTGATATCATGATATATTGGTATTCACATCAATTTCAACTAGTTTGCAGGTTGGTAGTGCTGCTGGATTCAAATCCAAGGTGATATTGTATTAATGATATGAATTTTATTGAGCATTTTGCAAAATATCACACTTTCTAGAAATTGTTTTTCATCTACTAAAGAATAGCATTGGTTGCAAGTTGGCACAACCCAACCAATGCCATGGAATAGTTGGAAGTTTTCTATAAAACTGAAGGTGCAGGTACAGTAACAAGTTATTTGTATTTTCCAAGTGAAATTCTAGGTGACATGTGAAGACCTCGGGCACTGAGTTACACTAGGCTTGATAATGGCTCGACT

Fln Alignment:

Contig1013___MMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLNEATGWGLEISEVKQQLEAARLNGIDVRAIVIINPGNPTGQVLSKENQVEIVEFCKNEGLLLLADEVYQENIYADNKEFHSFKKIARSMGYGEKDISLVSFQSISKGYYGECGKRGGYMEVTGIDNDIKDQLYKVASVNLCSNISGQILASLVMNPPKSGDESFELFFAERDSILSSLARRAKTLVDALNQLEGVTCNEAEGAMYVFPCIHLPQKAIKAAEAVNMVPDAFYCQRLLEATGIVVVAGSGFGQVPGTWHFRSTILPQEDKMPAIVSRLTTFHQKFMEEFRD
D5ACH7______________MMMQLLIRSEKDGILCPIPQYPLYSASIALQGGTLVPYYLNEATGWGLEISEVKQQLEAARVRGIDVRAIVIINPGNPTGQVLSKENQEEIVQFCKNEGLVLLADEVYQENVYVDNKKFHSFKKIARSMGYGEKDICLVSFQSVSKGYYGECGRRGGYMEVTGFDNNIKDQLYKVASVNLCSNISGQILASLVMNPPKSGDESFEMFFAERDGILSSLARRAKTLVDALNQLEGVTCNEAEGAMYVFPRIHLPQQAIKAAEAVNMVPDAFYSQRLLEATGIVTVPGSGFGQVPGTWHFRSTILPPEDKIPTIVSRMTTFHQKFMEEFHD

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1983	10			89	0.999919
2014	77		22		1.0
2043		11		88	0.999937
2139		25		75	0.996473
2173	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain