SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1005

Length: 3423 nt

UniGene Fasta

>sp_v3.0_unigene1005
CGGGTAACCTCGAAAGACGGGGTTCTATTTTTTCATTAATGGCGACCGTTGTCGTTGGCAGCAAGGGCTCGGCTTTGTCTGCAGAAGCGATTTACAGTGTCGCACACGAACTCTCTAAGCTACAGATAGATTCGTCCGCCCTGGAGAGACTCTTTCAACTATCAGGTAATTCTTCTTCTAAATCAATCGCGCCTACATATGTATATTCAAGCGAGAATCTCACTGAAAATGCGAACGGAAACGGCCCGTATTTAACCTGCGTGGAAGCCAGAGCTGCACTCGTTGTGCTTGTAAACAAGCTGCTGCAAGCCAAGGCTCGAATCCGTCCAGTTATTCCACTCTTTATTGAACATATGTTGAATAATAACGATAATAAAGCTCTGGATTTGCCCCAGTCCGATTCTGAATTTGTCCACGCGGTTGTGGAAGCAATTTACAGATTTAAAGATGATCTCAGGGTCGAGTCTTTTACGAGAATTTCAAAGGAGGATTTCTTTGCCACGGCAGAGGAAATTGAGGTCATGGAGGCTTGTTTTCCGGCTACCATTGGAATTAGCGCGCTCGCCATTTATACCTCATCAGCCTTGTGTGTAACTGTAGACGCTGTTGCGGGTTTGTCCTGTGAAGCAGTGCAAATTAACACGCAGGCTTTTGATCTAGAGGTTTCAAGCGAGGGCTTTTCAAACAAAGCAGACAACGACGTTGCCAGTGATATGCGCACGCTTTTATTCTGCTCGAAACTGGCAAACCCTAAGAATTTACGGTTTGATGGAGATTCTGCATTTTTTGCTATTCCTTACAATCACGGATGCCTCAGAGAAAATGTTAAATTGTCGCAGAACAAGATTAGGATTGAAGTTAACAGCACAGTATACGGTAAGAAGAAATCCGGCAGTACGCAGGGTTCAGGTGAAGCTGTGCAGCTTCAGGATTTAAAGCAGGCAGTTTTGTCACTTGCCGTTTCGTTGCAAGCGGTCGGAGTGAATAGTTTCAGCAGGGCTGAGCGCAGTGTCAGTGTTTTTAACAGCCTTGACAATGATGTGAAGCTGGATGACCATTTTCTTCGGCAGTATGAGTTCTCAGATGCCTTAAATCATAAAGTGCAATCGATTTTCTCGAAGGTTGTTTCCGAACGTGAGTCGGATGGAGTACTAATGGCCAGTGACGTTCTTGCCTTGTTGCAAGAGACGAGACGAATTCTGGCTTGCGAGGCAGTTTGCGCACTCTCTTTGCTCAGTTTGCGTGAAAAGCTTATTGCAGGTGGAATTGCAGAGAAAAACTTCCCGGGCGAAATTGTTGCCCAGGATGTTGCTGTTAAAGGGAGCCGCAATGAAGGGGGAAGCGTAGAGGAAAATGATATGAAGGCACATGAAACTAAGGGGAAGCCGAGAGGTGAAAAGAAGAAGAAAGGGAGCCAAGAAATTGGTTTGGGGAAGGGAACTGCTACTGTCAGGCAGGTCAATTGTTCAAATTATTCAAAAGAGATTACAGCTAGGTAATACACCTACTGGGGTTTATTTGTCACCGGATGAATGGGCAAAGGAACTGGAAATGTTACTTGATCCGAAAGACTCGGAACTTCAGATGCTATTAGAGACTATGAAGACAATTTTAGAAAGCAATGAAACTAGAAGATTACCTAAAATTCCCAAGGGTACCCGTGATTTCACACCAGAACAGATGGCCATAAGAGAAAGAGCATTTTCGATAATTGTAGGGGTGTTCAAGCGTCATGGTGCTGTGGCCCTTGATACTCCAGTTTTTGAGTTGAGAGAGACTCTGATGGGAAAGTACGGTGAAGATTCTAAGCTAATTTATGACCTTGCTGATCAGGGTGGTGAAATATGCTCTTTGAGATACGATTTGACTGTGCCTTTTGCACGATATTTGGCTATGCATGGTATCAATAATTTGAAAAGATATCACATAGCAAGGGTCTACAGGAGGGATAACCCTTCTAAGGGACGTTACCGTGAATTCTATCAGTGTGATTTTGATATTGCTGGGCAGTATTCCCCAATGGTACCTGATTTTGAAGTGATGAAGGTTTTGACTGAGCTCTTAGATGAACTAAACATCGGGCACTACGAGGTGAAGCTGAACCATCGAAAATTGTTGGATGGAATGTTAGAGATATGTGGAGTACCTCAGGGAAAATTCAGAAGTATTTGCTCTGCAATTGATAAACTGGATAAGCAGCCATGGGAGCAAGTTCGGAAAGAAATGGTGGAAGAGAAAGGTTTAACTCCAGAAGTGGCTGATAGCATTGGATCTCTTGTTCTAAAAAAAGGAATGCCACTGCAGATGCTGGCTGAGCTTAAACAGGAAGGCAGCTGTTTTCTGCAGCATGATGGTTCTGTACATGCACTTAGTGAACTTGAAATTTTGTTTAAGTATCTAGAGCGTTCAGGTTGTCTAAACAAGATAGTATTTGATCTTAGTCTTGCAAGAGGTCTTGACTACTACACTGGAGTGATATATGAAGCCGTTTTCAAGGGCAGCACACAGGTTGGTTCCATTGCAGCTGGAGGACGTTATGACAATCTTGTTGGTATGTTTAGTGGGAAGCAAGTTCCTGCAGTAGGTGTGAGCCTTGGGATTGAAAGAGTATTTACAATAATGGAGGAAGAATGCAAAAATGTAATCTCTGCCACACAGACAGAAGTTTTGGTGGTGGCCTTAGGAGATGATATGGGGGTAGCTATTGAACTAGTCAGTAAGCTCTGGGCTGCAAAATTGAAAGCGGAATTTGTTCTAACAAACAGCAGAAAAATTGTGAAATGCATAGCTGATGCATCGAAGGCTGGTATACCTTGGATGTTGATTGTGGGTGAGAATGAACTGCAGAAGGGTTTGATTACACTCAGAGACATTCAAGCTAAGAGACAAGAGGAGGTTCCAAGGGATGAGATTATTGCAGAACTAAAGATGAGATTGAATTCTTCAAGTTCTGATTACATTGCTGTCCAATGAAATGAATTCTCATGTTTTGATTTTGGAAAGGGTTGTCAGATTTTGTCTTAATTCTATGGGAAGGATACAATATGAATTCATGCAGGCTGTGTTTTATTTTTATACGAGAAAACCCAAGAAATTCATCTGCAAATATGAGAGTAATTCTCTCGTTAGTTTGCTACACTACCTTATAGTTGTTCAGCGGGATTTTTTCAAACAGTTAGATGAGCCATAACAGTTATCTGTTTTTTCGTCCATTACTTTTACTGTAGTCAGTTTTAAATTATGCGTTATAATGCAAATGATTCTTTACTATGCAAAAAAATGTGTCATGAATAATGATTTGTGTAAAACTGGCATTGTCTACATTTTCATTCAGGGAGAGGCTAGAAGTGATAATAGAAAGTCTTCTGTCAAATCCGATGAGCAAGTCATGTTTCCACTCTGGTCTGTGGTTTTTCATAATGG

Ace file of the UniGene sp_v3.0_unigene1005

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histidyl-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9SHN6_RICCO	-	-	0.0	63%
FL-Next	sp=Histidine--tRNA ligase; Oryza sativa subsp. japonica (Rice).	-	-	0.0	31%
Sma3	Histidyl-tRNA synthetase	-	-	4.689e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histidine--tRNA ligase.	EC:6.1.1.21	-	3.328e-15	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA biosynthesis	00970		3.328e-15	%

Source	Gene names
Sma3	At3g02760; F13E7.30; GSVIVT00032071001; Os05g0150900; OsI_18483; OsJ_17145; PHATRDRAFT_16944; POPTRDRAFT_913623; RCOM_0741740; THAPSDRAFT_42621;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	histidine-tRNA ligase activity	GO:0004821	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	histidyl-tRNA aminoacylation	GO:0006427	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain	IPR002314	-	-
Sma3	Anticodon-binding	IPR004154	-	-
Sma3	Histidyl-tRNA synthetase, class IIa	IPR004516	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3	Histidyl-tRNA synthetase, class IIa, subgroup	IPR015807	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G02760.1	Class II aaRS and biotin synthetases superfamily protein chr3:597588-600650 REVERSE LENGTH=883	60%
RefSeq	Arabidopsis thaliana	NP_186925.4	histidyl-tRNA synthetase [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002325939.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: P93422

Fln msg: Separated hits, possible frame ERROR between 1289 and 1372, No stop codon before M and low homology subject, your sequence is longer than subject: 979 - 788

Fln protein: MATVVVGSKGSALSAEAIYSVAHELSKLQIDSSALERLFQLSGNSSSKSIAPTYVYSSENLTENANGNGPYLTCVEARAALVVLVNKLLQAKARIRPVIPLFIEHMLNNNDNKALDLPQSDSEFVHAVVEAIYRFKDDLRVESFTRISKEDFFATAEEIEVMEACFPATIGISALAIYTSSALCVTVDAVAGLSCEAVQINTQAFDLEVSSEGFSNKADNDVASDMRTLLFCSKLANPKNLRFDGDSAFFAIPYNHGCLRENVKLSQNKIRIEVNSTVYGKKKSGSTQGSGEAVQLQDLKQAVLSLAVSLQAVGVNSFSRAERSVSVFNSLDNDVKLDDHFLRQYEFSDALNHKVQSIFSKVVSERESDGVLMASDVLALLQETRRILACEAVCALSLLSLREKLIAGGIAEKNFPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKLRGSREVKRRRKGAKKLVWGRELLLSGRSIVQIIQKRLQLGNTPTGVYLSPDEWAKELEMLLDPKDSELQMLLETMKTILESNETRRLPKIPKGTRDFTPEQMAIRERAFSIIVGVFKRHGAVALDTPVFELRETLMGKYGEDSKLIYDLADQGGEICSLRYDLTVPFARYLAMHGINNLKRYHIARVYRRDNPSKGRYREFYQCDFDIAGQYSPMVPDFEVMKVLTELLDELNIGHYEVKLNHRKLLDGMLEICGVPQGKFRSICSAIDKLDKQPWEQVRKEMVEEKGLTPEVADSIGSLVLKKGMPLQMLAELKQEGSCFLQHDGSVHALSELEILFKYLERSGCLNKIVFDLSLARGLDYYTGVIYEAVFKGSTQVGSIAAGGRYDNLVGMFSGKQVPAVGVSLGIERVFTIMEEECKNVISATQTEVLVVALGDDMGVAIELVSKLWAAKLKAEFVLTNSRKIVKCIADASKAGIPWMLIVGENELQKGLITLRDIQAKRQEEVPRDEIIAELKMRLNSSSSDYIAVQ*

Protein Length: 980

Fln nts: CGGGTAACCTCGAAAGACGGGGTTCTATTTTTTCATTA_-_ATGGCGACCGTTGTCGTTGGCAGCAAGGGCTCGGCTTTGTCTGCAGAAGCGATTTACAGTGTCGCACACGAACTCTCTAAGCTACAGATAGATTCGTCCGCCCTGGAGAGACTCTTTCAACTATCAGGTAATTCTTCTTCTAAATCAATCGCGCCTACATATGTATATTCAAGCGAGAATCTCACTGAAAATGCGAACGGAAACGGCCCGTATTTAACCTGCGTGGAAGCCAGAGCTGCACTCGTTGTGCTTGTAAACAAGCTGCTGCAAGCCAAGGCTCGAATCCGTCCAGTTATTCCACTCTTTATTGAACATATGTTGAATAATAACGATAATAAAGCTCTGGATTTGCCCCAGTCCGATTCTGAATTTGTCCACGCGGTTGTGGAAGCAATTTACAGATTTAAAGATGATCTCAGGGTCGAGTCTTTTACGAGAATTTCAAAGGAGGATTTCTTTGCCACGGCAGAGGAAATTGAGGTCATGGAGGCTTGTTTTCCGGCTACCATTGGAATTAGCGCGCTCGCCATTTATACCTCATCAGCCTTGTGTGTAACTGTAGACGCTGTTGCGGGTTTGTCCTGTGAAGCAGTGCAAATTAACACGCAGGCTTTTGATCTAGAGGTTTCAAGCGAGGGCTTTTCAAACAAAGCAGACAACGACGTTGCCAGTGATATGCGCACGCTTTTATTCTGCTCGAAACTGGCAAACCCTAAGAATTTACGGTTTGATGGAGATTCTGCATTTTTTGCTATTCCTTACAATCACGGATGCCTCAGAGAAAATGTTAAATTGTCGCAGAACAAGATTAGGATTGAAGTTAACAGCACAGTATACGGTAAGAAGAAATCCGGCAGTACGCAGGGTTCAGGTGAAGCTGTGCAGCTTCAGGATTTAAAGCAGGCAGTTTTGTCACTTGCCGTTTCGTTGCAAGCGGTCGGAGTGAATAGTTTCAGCAGGGCTGAGCGCAGTGTCAGTGTTTTTAACAGCCTTGACAATGATGTGAAGCTGGATGACCATTTTCTTCGGCAGTATGAGTTCTCAGATGCCTTAAATCATAAAGTGCAATCGATTTTCTCGAAGGTTGTTTCCGAACGTGAGTCGGATGGAGTACTAATGGCCAGTGACGTTCTTGCCTTGTTGCAAGAGACGAGACGAATTCTGGCTTGCGAGGCAGTTTGCGCACTCTCTTTGCTCAGTTTGCGTGAAAAGCTTATTGCAGGTGGAATTGCAGAGAAAAACTTCCCGGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAAACTAAGGGGAAGCCGAGAGGTGAAAAGAAGAAGAAAGGGAGCCAAGAAATTGGTTTGGGGAAGGGAACTGCTACTGTCAGGCAGGTCAATTGTTCAAATTATTCAAAAGAGATTACAGCTAGGTAATACACCTACTGGGGTTTATTTGTCACCGGATGAATGGGCAAAGGAACTGGAAATGTTACTTGATCCGAAAGACTCGGAACTTCAGATGCTATTAGAGACTATGAAGACAATTTTAGAAAGCAATGAAACTAGAAGATTACCTAAAATTCCCAAGGGTACCCGTGATTTCACACCAGAACAGATGGCCATAAGAGAAAGAGCATTTTCGATAATTGTAGGGGTGTTCAAGCGTCATGGTGCTGTGGCCCTTGATACTCCAGTTTTTGAGTTGAGAGAGACTCTGATGGGAAAGTACGGTGAAGATTCTAAGCTAATTTATGACCTTGCTGATCAGGGTGGTGAAATATGCTCTTTGAGATACGATTTGACTGTGCCTTTTGCACGATATTTGGCTATGCATGGTATCAATAATTTGAAAAGATATCACATAGCAAGGGTCTACAGGAGGGATAACCCTTCTAAGGGACGTTACCGTGAATTCTATCAGTGTGATTTTGATATTGCTGGGCAGTATTCCCCAATGGTACCTGATTTTGAAGTGATGAAGGTTTTGACTGAGCTCTTAGATGAACTAAACATCGGGCACTACGAGGTGAAGCTGAACCATCGAAAATTGTTGGATGGAATGTTAGAGATATGTGGAGTACCTCAGGGAAAATTCAGAAGTATTTGCTCTGCAATTGATAAACTGGATAAGCAGCCATGGGAGCAAGTTCGGAAAGAAATGGTGGAAGAGAAAGGTTTAACTCCAGAAGTGGCTGATAGCATTGGATCTCTTGTTCTAAAAAAAGGAATGCCACTGCAGATGCTGGCTGAGCTTAAACAGGAAGGCAGCTGTTTTCTGCAGCATGATGGTTCTGTACATGCACTTAGTGAACTTGAAATTTTGTTTAAGTATCTAGAGCGTTCAGGTTGTCTAAACAAGATAGTATTTGATCTTAGTCTTGCAAGAGGTCTTGACTACTACACTGGAGTGATATATGAAGCCGTTTTCAAGGGCAGCACACAGGTTGGTTCCATTGCAGCTGGAGGACGTTATGACAATCTTGTTGGTATGTTTAGTGGGAAGCAAGTTCCTGCAGTAGGTGTGAGCCTTGGGATTGAAAGAGTATTTACAATAATGGAGGAAGAATGCAAAAATGTAATCTCTGCCACACAGACAGAAGTTTTGGTGGTGGCCTTAGGAGATGATATGGGGGTAGCTATTGAACTAGTCAGTAAGCTCTGGGCTGCAAAATTGAAAGCGGAATTTGTTCTAACAAACAGCAGAAAAATTGTGAAATGCATAGCTGATGCATCGAAGGCTGGTATACCTTGGATGTTGATTGTGGGTGAGAATGAACTGCAGAAGGGTTTGATTACACTCAGAGACATTCAAGCTAAGAGACAAGAGGAGGTTCCAAGGGATGAGATTATTGCAGAACTAAAGATGAGATTGAATTCTTCAAGTTCTGATTACATTGCTGTCCAATGA___AATGAATTCTCATGTTTTGATTTTGGAAAGGGTTGTCAGATTTTGTCTTAATTCTATGGGAAGGATACAATATGAATTCATGCAGGCTGTGTTTTATTTTTATACGAGAAAACCCAAGAAATTCATCTGCAAATATGAGAGTAATTCTCTCGTTAGTTTGCTACACTACCTTATAGTTGTTCAGCGGGATTTTTTCAAACAGTTAGATGAGCCATAACAGTTATCTGTTTTTTCGTCCATTACTTTTACTGTAGTCAGTTTTAAATTATGCGTTATAATGCAAATGATTCTTTACTATGCAAAAAAATGTGTCATGAATAATGATTTGTGTAAAACTGGCATTGTCTACATTTTCATTCAGGGAGAGGCTAGAAGTGATAATAGAAAGTCTTCTGTCAAATCCGATGAGCAAGTCATGTTTCCACTCTGGTCTGTGGTTTTTCATAATGG

Fln Alignment:

Contig1005___SSALCVTVDAVAGLSCEAVQINTQAFDLEVSSEGFSNKADNDVASDMRTLLFCSKLANPKNLRFDGDSAFFA-IPYNHGCLRENVKLSQNKIRIEVNSTVYXXXXXXXXXXXXEAVQLQDLKQAVL-----SLAVSLQAVGVNSFSRAERSVSVFNSLDNDVKLDDHFLRQYEFSDALNHKVQSIFSKVVSERESDGVLMASDVLALLQETRRILACEAVCALSLLSLREKLIAGGIAEKNFPGxxxxxxxxxxxxxxxxxxxxxxxxxxxxKLRGSREVKRRR---KGAKK-LVWGRELLLSGRSIVQIIQKRLQLGNTPTGVYLSPDEWAKELEMLLDPKDSELQMLLETMKTILESNETRRLPKIPKGTRDFTPEQMAIRERAFSIIVGVFKRHGAVALDTPVFELRETLMGKYGEDSKLIYDLADQGGEICSLRYDLTVPFARYLAMHGINNLKRYHIARVYRRDNPSKGRYREFYQCDFDIAGQYSPMVPDFEVMKVLTELLDELNIGHYEVKLNHRKLLDGMLEICGVPQGKFRSICSAIDKLDKQPWEQVRKEMVEEKGLTPEVADSIGSLVLKKGMPLQMLAELKQEGSCFLQHDGSVHALSELEILFKYLERSGCLNKIVFDLSLARGLDYYTGVIYEAVFKGSTQVGSIAAGGRYDNLVGMFSGKQVPAVGVSLGIERVFTIMEEE--CKNVISATQTEVLVVALGDDMGVAIELVSKLWAAKLKAEFVLTNSRKIVKCIADASKAGIPWMLIVGENELQKGLITLRDIQAKRQEEVPRDEIIAELKMRLNS
P93422______________ASPLVRVADAVAALSCEAARGDVAAFDVPTSGDGLSAKDEADVAADVKMLLFGSKLVGAAG---GADAASFTKVPTVNGIFREAVRALHARVRIELNAPV--------KLGKRDAVQTGEGKEEALVALATQLARPVQAMLKLSVARARLCVA---------RIDDAELRKKLTDGVEIDDLKGMLGKVTI--DSDAVSVLRGVYNSLLKFRDILAWEAAVAMAVIEMDSSIEKPQACEENEAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxKPKGDKKSKKKKTLGKGTSAVLMLLRDLVTNGKEVLSVNSALLA-------------EWGTELSLLFDPKCPRLVSLVDKVKEIVETNEVRRLPKIPKGTRDFGKEQMAIREHAFSIITGVFKMHGAVSLDTPVFELRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNNISSLKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYETMEPDFEVIKVLTELLDQLDIGTYEIKLNHRKLLDGMLEICGVPPEKFRTVCSSIDKLDKQTFEQVKKELVDEKGISNETADKIGDLVKTRGPPLEVLLELRKEGSKFMGNAGSVTALNELEILFKALDKANAIGKIVFDLSLARGLDYYTGVIYEAVFKGTTQVGSIAAGGRYDNLVGMFSGKQVPAVGVSLGIERVFAIMEQQEMEKNQIRATETEVLVSIIGKDLILAAELVSELWNAGIKAEFKLTT--RIQNHLKYATQSGIPWMVLVGESEISSGKVKLKNLAASQEEEVDRTEFAQVLKQKLRN

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
894	33		66		0.997452
895		66		33	0.997452
1161		90		10	0.90298
1216	88		11		0.923564
1252	16		83		0.994512
1253		83	16		0.994512
1254	16			83	0.994512
1255		16		83	0.994512
1361	87	12			0.992554
1363		12	87		0.992554
1444		75		25	0.996473
2349	12	87			0.992554
2352		87		12	0.992554
2602			90	10	0.90298
2699			80	20	0.999996
3123		16		83	0.999991
3279		25	50	25	0.995533
3280	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain