SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1000

Length: 4457 nt

UniGene Fasta

>sp_v3.0_unigene1000
TGGGGGAATTTATCAGCAATAATGCGAGCAGGGCTAAGCACAGTGCAGCAGACGCTAACCCCGGAGGCGGCGAGTATCTTGAATCATGCCATAGCAGAAGCTTGTCGCCGCGGGCACGGCCAAACGACTCCTCTTCATGTCGCTGCGACGCTCTTGGCAGCCCCTGCTAGCCATCTGCGGCAGGCCTGCATTCGGTCTCATCCCAACTCTTCGCATCCTCTTCAATGCCGGGCGTTGGAGCTTTGCTTCAGCGTGGCTCTCGATCGACTACCGGCAGCGCAGGGAGTTGTTCCGGGCACCGAACCGCCGATTTCTAATGCTCTCATGGCGGCTCTTAAGCGAGCGCAAGCACATCAGAGAAGAGGGTGCCCTGAGCAGCAGCAGCAGCCTTTGTTGGCTGTGAAGGTAGAATTGGAACAGCTAATAGTTTCAATTCTTGATGATCCTAGTGTTAGCAGGGTGATGAGGGAAGCCAGTTTTTCGAGCCCTGCTGTCAAAGCAACTATCGAGCAATCGATCAATATGGCAAACTCGCATTCATCTATTTCCCTATCTTCAAGTGCCATTGATCGGGTGGGATTCAGATTAGGTAGTTCGCCTTCAATTTTGGGAAGAAGTCAGCAGCATTTTGATTGTAGCAATAGAAGCTTAGAGCGGGATGATGCGAGCTCTCGCCCAATTTCACAGAGAAATCCCTACTTGAACCCTCGATTGCAAAGTGCAGGGGTTGCTGCTGAAGCCAGCGGCAATAGAAACGACGAGATTAGAAGACTTATAGAAATCCTTCAAAAGGTTAAGAAGAGGAATCCTGTTCTTGTAGGGGAGAAAGAGCCCGAAGCTGTAATCAAAGAACTCGTGCACAGAATAGAAAAAGGTGAGACCCCAGCGCAGCTTCAGGGTGTGCAGATCCTTCCTATTGAAACAGAGATATCCGCTTTCTGTACCGGAAACAAAGATAAAGATCACATTACTACGAAGTTCAGGGAATTGGACCAAATGGTGGAAGGCCGTTTGAATAAGGGTGTAATTCTTAACGTGGGTGATTTAAGGTGGCTTGTAGAACAGCCGAAGGCAGGAGCGCCGATAGGGTTGTCAGCCTCATCTTCTATGCAGCAAGTTGTTACGAAATTGGGCCAATTGTTAGCTCGATATGGACCAACTGGTCGACTATGGCTGATTGGTGTTGCGACTTGTGAAACATACCTCCGTTGTCAAGTGTACCATCCTTCTATGGAGAATGATTGGGACCTGCAGCCTCTTCCTATTGTTGCCAAACCAACTCCAGGATTATTTCCTAGGTTTATGAGCTCGGGAATTGTGAGCAACTCAATGGAGTCACTTTTTCCTCTTAAGGGGTTTCCCTCAATTGTACCCGCACCAAAGAAATCAAGAGAAACCAATGACTCAACTCAGAAAATTGATTGTTGCTCCCAGTGTATGTCAACCTATGAGCAAGAACTTGCCTTAATGGAGCAGGAGAAGAAGGCCCATATGCTGTCTACTACCTCTCCACAGTCAAAATCACTAGATCAAGGGCAACAGGCATTGCCTCAGTGGCTTCAAATTGCAAAGTCAGCTAATGGTGCAAAAGAACCAGATATGGTGCAGTCAAAAGATCAGGAGCATACGTGGAATCAGAAGGTAGAGGAACTGCAAAAGAAATGGAATGAAAAATGCTGTTTGCTGCATCCCCATTTCCATGCATTTCGGCCACTTATTTCAGTCGATCAATCTCAGGAGTCCCTGCGGGTGTCTGGTCAAGCAATTGATAGAAATGGCAGGAGTCAAAATGACAGTACTGTGGAAAAATCAGGAATTCAAGATCCACATAGAGGTAGAGACACATTCTCAATCACACTCGACTCCTTATGGCGGTCACCTTCTCAGTCCAAGTGTGTGATGCCTATTTTGAATCAAAATAATGGTACACTAGTTGAGGGGATTACTAGATCTTCAGTGACCCAGACTGCAGTAAATGGTCGTGCACATGTTCTCCAGTCTAGTTTTGGAGGTCGTTCATGTGAACTCCCAAGCAGTTTGCCAGGGTCATGTTTAATTTCTTCTCCGAATCCTAATCCAGTTGCGACAGATCTGGCATTGGGAAGGTCGAGTGTGTTCATGGCATCTTCTTGCAGCCTAAGCAGTGTACAGGGAAAAAATCTTTTGGAGGAATCCCATAAAGAACGTCTGAAAGACATGCCTGGTTGTGTTTCTTCAAACTTTGGTGTACCTTGGCATTTTTCTCCCAAAGTATCGTCTCCATCTACTGATGCACATTCACTTGGATCATCACAGCCTTTTCTTGATCCGCAAAACAGGAAAGATTCTAGCTTTTATCAGCCTACAGATTCAGATGCATTTAAGAAGGTTTACAAGGGCCTTATAGAGAAGGTCGGGTGGCAGCGTGAAGCAGCTTGTTCTGTGACAAATGTAGTCATTCAACATAGATCAGGAAAAGGTAGGTGCCGTGGTGTAGGCCCTAAAGGAGATATATGGTTGCTTTTCTTGGGTCCAGATCGAGTGGGGAAGCGAAAGATGGCTGCAGCTCTTTCTGAACTTATATTTGGAAGTGACAAAAACCTTATTTCCATGAAGTTAAGTTCACAAGATGGTGTGATATCTTCAAGCTGGAACCTAGGCCCACATGAGCATGAGGAATATGGTATGAACTTTAGGGGTAAGACTACTTTGGATAGGATTGCTGAAGCAGTGAGACTGAATCCTTTATCTGTCATTCTGTTGGAAGATATGGATCAAGCTGATCCTTTGATACGTAGTAAATTGATTCTGGCAATGGAGAAAGGTAGATTGCCTGATTCACACGGGAAAGAATATAGCCTGGGTAACATAATATTTGTCATTACAGGCTGTGCAGGATCTGAGAATCACCATGAGATTGGAAGGCAAGAAGGTCGGTTTTCTGAAGAAAGACTAGTAGCAGCGCGTGCTTGTCCAATGCAATTTTTAGTCGAGAGTGCCCGTTTTGAAGTTCTTATTGCCAAACATAAGAAGAGAGTGTCTGTCATTAATTCTATGCATGAGTCAGAAAGCAAGGATGATGAAGATGTGTTCTTAGGATTGGGAATTGGAAACAAGCGTAAAGCTGATTGGATAAAAAAATGAACAATCTCAAAATGACATAGAAAATGTCAAGAAAACGAGCAAAGAGCCCTTCGTATCCCTGGACTTGAACCTCTCTGTGGAGGAGAACGATGTTGCTGACTTCTCTACTGCTAGTCAAGGCCACACTGAGGCATGCCAGGGATCCCGTGACTCAAGTGATCTGACAGTTGAACAAGGTCTTAAATGTGCTGGAGCTGGTGAACTTTACAAGGATCTTTCTGATTCAGTAGATGAGAAAGTTGTATTCAAGCCTTTTGACTTTGAAAGGCTTGCGGATAAAATCATTGAGTCCATTAGTGCAAAGTTCTTCAGCATAATTGGAACTGAGGGCCTCATGGAGATAGACATAAAAGCCCTCGAGCAGATGCTTGCTTGCGTTTGGTTTTCCTCTGATGGAATGGAGATGTTCGAGAACTGGGTTGAACGGGTGCTTGTACGTTGTTTAACAGAAATAAGTACATCATGTGCTGTTTCAGTTGACACAGTCGTTAAACTTGTTCTTGAGAAGGATCGTTTTGCTGGAGAAAGGCGACCTGGAGTTCCATCCCTCCCCAGCAATATTTCAGTAAATATAAGAACTAAGACCGGCCAAAAGGCAGGGGCTATCTAAATGTTGCTGCTTTTCTCAATGGAAACCACTTGTCTAGTATCAAGACTGCTTTGCAAACCCCATTGAAATTAGGGGTTGTCCATAATTATTCAATTTTTTTTATAAAACAGCGGCACTAAATTTCTGCTTACAACGAGGCAAGCCTGGAGACTACGTTTGTACTTTCTAGTTAATTGAGGGTAACTAGCTACATAAAACTGTAAAAGCATCATGCAGAATCTAGAATAGTTTCAATCCTGCATCTTCAAATCAAACACAGAACTGAATCGTGACCCAGCCTTCGATGAAACAGTGGATCATATAGTTCTAGCTCCGGAAGAAATTAGCTATTCAAGGACATTTTACATTGTGACTACTACCATTTTTTGCACTACAGAGAAGTGCACATCTTTTCCAAACAACAGAGCAGGGCATTTATTTGGCTACACTGAAGATCAGTCCTGTATTTATTAACCTGGCACCGAGGCTGTATTTTGTGTATTTTGTATCCCTTGAATAAGGGCACTCAAGGTAGAACACACGGGTGGGACTACTGCAAATCGATTCCAAACCTCAAAATTCAAGAAGCCAGAGCTGGTGATGGGACTTGGGTTCAGACAAAACTGTTGTAAAGTTGTTATTTATTGGGGAGTCCGAATTCCTCTTAATTCCAAAAGTTGCAGCAATGTACGAATGAGAAAATCTCAAATATTGTGTGTTCCTTTGGATGGAACTGCTTAAGACT

Ace file of the UniGene sp_v3.0_unigene1000

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9T4L3_RICCO	-	-	0.0	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	25%
Sma3	101 kDa heat shock protein	-	-	1.886e-08	-

Source	Gene names
Sma3	At4g30350; At5g57710; GSVIVT00017025001; GSVIVT00017509001; OSJNBa0036E18.7; Os08g0250900; OsI_07555; OsI_15283; OsI_28463; OsJ_07038; OsJ_14761; OsJ_26621; POPTRDRAFT_563549; POPTRDRAFT_653660; POPTRDRAFT_669488; POPTRDRAFT_735269; RCOM_0349570;

Source	GOs	Term	Type	Identity
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	protein metabolic process	GO:0019538	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Clp, N-terminal	IPR004176	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Acyl-CoA dehydrogenase, conserved site	IPR006089	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G57710.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein chr5:23384794-23388052 FORWARD LENGTH=990	51%
RefSeq	Arabidopsis thaliana	NP_200579.1	heat shock protein-like protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002309387.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQS4

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 1034 - 463

Fln protein: MRAGLSTVQQTLTPEAASILNHAIAEACRRGHGQTTPLHVAATLLAAPASHLRQACIRSHPNSSHPLQCRALELCFSVALDRLPAAQGVVPGTEPPISNALMAALKRAQAHQRRGCPEQQQQPLLAVKVELEQLIVSILDDPSVSRVMREASFSSPAVKATIEQSINMANSHSSISLSSSAIDRVGFRLGSSPSILGRSQQHFDCSNRSLERDDASSRPISQRNPYLNPRLQSAGVAAEASGNRNDEIRRLIEILQKVKKRNPVLVGEKEPEAVIKELVHRIEKGETPAQLQGVQILPIETEISAFCTGNKDKDHITTKFRELDQMVEGRLNKGVILNVGDLRWLVEQPKAGAPIGLSASSSMQQVVTKLGQLLARYGPTGRLWLIGVATCETYLRCQVYHPSMENDWDLQPLPIVAKPTPGLFPRFMSSGIVSNSMESLFPLKGFPSIVPAPKKSRETNDSTQKIDCCSQCMSTYEQELALMEQEKKAHMLSTTSPQSKSLDQGQQALPQWLQIAKSANGAKEPDMVQSKDQEHTWNQKVEELQKKWNEKCCLLHPHFHAFRPLISVDQSQESLRVSGQAIDRNGRSQNDSTVEKSGIQDPHRGRDTFSITLDSLWRSPSQSKCVMPILNQNNGTLVEGITRSSVTQTAVNGRAHVLQSSFGGRSCELPSSLPGSCLISSPNPNPVATDLALGRSSVFMASSCSLSSVQGKNLLEESHKERLKDMPGCVSSNFGVPWHFSPKVSSPSTDAHSLGSSQPFLDPQNRKDSSFYQPTDSDAFKKVYKGLIEKVGWQREAACSVTNVVIQHRSGKGRCRGVGPKGDIWLLFLGPDRVGKRKMAAALSELIFGSDKNLISMKLSSQDGVISSSWNLGPHEHEEYGMNFRGKTTLDRIAEAVRLNPLSVILLEDMDQADPLIRSKLILAMEKGRLPDSHGKEYSLGNIIFVITGCAGSENHHEIGRQEGRFSEERLVAARACPMQFLVESARFEVLIAKHKKRVSVINSMHESESKDDEDVFLGLGIGNKRKADWIKK*

Protein Length: 1035

Fln nts: TGGGGGAATTTATCAGCAATA_-_ATGCGAGCAGGGCTAAGCACAGTGCAGCAGACGCTAACCCCGGAGGCGGCGAGTATCTTGAATCATGCCATAGCAGAAGCTTGTCGCCGCGGGCACGGCCAAACGACTCCTCTTCATGTCGCTGCGACGCTCTTGGCAGCCCCTGCTAGCCATCTGCGGCAGGCCTGCATTCGGTCTCATCCCAACTCTTCGCATCCTCTTCAATGCCGGGCGTTGGAGCTTTGCTTCAGCGTGGCTCTCGATCGACTACCGGCAGCGCAGGGAGTTGTTCCGGGCACCGAACCGCCGATTTCTAATGCTCTCATGGCGGCTCTTAAGCGAGCGCAAGCACATCAGAGAAGAGGGTGCCCTGAGCAGCAGCAGCAGCCTTTGTTGGCTGTGAAGGTAGAATTGGAACAGCTAATAGTTTCAATTCTTGATGATCCTAGTGTTAGCAGGGTGATGAGGGAAGCCAGTTTTTCGAGCCCTGCTGTCAAAGCAACTATCGAGCAATCGATCAATATGGCAAACTCGCATTCATCTATTTCCCTATCTTCAAGTGCCATTGATCGGGTGGGATTCAGATTAGGTAGTTCGCCTTCAATTTTGGGAAGAAGTCAGCAGCATTTTGATTGTAGCAATAGAAGCTTAGAGCGGGATGATGCGAGCTCTCGCCCAATTTCACAGAGAAATCCCTACTTGAACCCTCGATTGCAAAGTGCAGGGGTTGCTGCTGAAGCCAGCGGCAATAGAAACGACGAGATTAGAAGACTTATAGAAATCCTTCAAAAGGTTAAGAAGAGGAATCCTGTTCTTGTAGGGGAGAAAGAGCCCGAAGCTGTAATCAAAGAACTCGTGCACAGAATAGAAAAAGGTGAGACCCCAGCGCAGCTTCAGGGTGTGCAGATCCTTCCTATTGAAACAGAGATATCCGCTTTCTGTACCGGAAACAAAGATAAAGATCACATTACTACGAAGTTCAGGGAATTGGACCAAATGGTGGAAGGCCGTTTGAATAAGGGTGTAATTCTTAACGTGGGTGATTTAAGGTGGCTTGTAGAACAGCCGAAGGCAGGAGCGCCGATAGGGTTGTCAGCCTCATCTTCTATGCAGCAAGTTGTTACGAAATTGGGCCAATTGTTAGCTCGATATGGACCAACTGGTCGACTATGGCTGATTGGTGTTGCGACTTGTGAAACATACCTCCGTTGTCAAGTGTACCATCCTTCTATGGAGAATGATTGGGACCTGCAGCCTCTTCCTATTGTTGCCAAACCAACTCCAGGATTATTTCCTAGGTTTATGAGCTCGGGAATTGTGAGCAACTCAATGGAGTCACTTTTTCCTCTTAAGGGGTTTCCCTCAATTGTACCCGCACCAAAGAAATCAAGAGAAACCAATGACTCAACTCAGAAAATTGATTGTTGCTCCCAGTGTATGTCAACCTATGAGCAAGAACTTGCCTTAATGGAGCAGGAGAAGAAGGCCCATATGCTGTCTACTACCTCTCCACAGTCAAAATCACTAGATCAAGGGCAACAGGCATTGCCTCAGTGGCTTCAAATTGCAAAGTCAGCTAATGGTGCAAAAGAACCAGATATGGTGCAGTCAAAAGATCAGGAGCATACGTGGAATCAGAAGGTAGAGGAACTGCAAAAGAAATGGAATGAAAAATGCTGTTTGCTGCATCCCCATTTCCATGCATTTCGGCCACTTATTTCAGTCGATCAATCTCAGGAGTCCCTGCGGGTGTCTGGTCAAGCAATTGATAGAAATGGCAGGAGTCAAAATGACAGTACTGTGGAAAAATCAGGAATTCAAGATCCACATAGAGGTAGAGACACATTCTCAATCACACTCGACTCCTTATGGCGGTCACCTTCTCAGTCCAAGTGTGTGATGCCTATTTTGAATCAAAATAATGGTACACTAGTTGAGGGGATTACTAGATCTTCAGTGACCCAGACTGCAGTAAATGGTCGTGCACATGTTCTCCAGTCTAGTTTTGGAGGTCGTTCATGTGAACTCCCAAGCAGTTTGCCAGGGTCATGTTTAATTTCTTCTCCGAATCCTAATCCAGTTGCGACAGATCTGGCATTGGGAAGGTCGAGTGTGTTCATGGCATCTTCTTGCAGCCTAAGCAGTGTACAGGGAAAAAATCTTTTGGAGGAATCCCATAAAGAACGTCTGAAAGACATGCCTGGTTGTGTTTCTTCAAACTTTGGTGTACCTTGGCATTTTTCTCCCAAAGTATCGTCTCCATCTACTGATGCACATTCACTTGGATCATCACAGCCTTTTCTTGATCCGCAAAACAGGAAAGATTCTAGCTTTTATCAGCCTACAGATTCAGATGCATTTAAGAAGGTTTACAAGGGCCTTATAGAGAAGGTCGGGTGGCAGCGTGAAGCAGCTTGTTCTGTGACAAATGTAGTCATTCAACATAGATCAGGAAAAGGTAGGTGCCGTGGTGTAGGCCCTAAAGGAGATATATGGTTGCTTTTCTTGGGTCCAGATCGAGTGGGGAAGCGAAAGATGGCTGCAGCTCTTTCTGAACTTATATTTGGAAGTGACAAAAACCTTATTTCCATGAAGTTAAGTTCACAAGATGGTGTGATATCTTCAAGCTGGAACCTAGGCCCACATGAGCATGAGGAATATGGTATGAACTTTAGGGGTAAGACTACTTTGGATAGGATTGCTGAAGCAGTGAGACTGAATCCTTTATCTGTCATTCTGTTGGAAGATATGGATCAAGCTGATCCTTTGATACGTAGTAAATTGATTCTGGCAATGGAGAAAGGTAGATTGCCTGATTCACACGGGAAAGAATATAGCCTGGGTAACATAATATTTGTCATTACAGGCTGTGCAGGATCTGAGAATCACCATGAGATTGGAAGGCAAGAAGGTCGGTTTTCTGAAGAAAGACTAGTAGCAGCGCGTGCTTGTCCAATGCAATTTTTAGTCGAGAGTGCCCGTTTTGAAGTTCTTATTGCCAAACATAAGAAGAGAGTGTCTGTCATTAATTCTATGCATGAGTCAGAAAGCAAGGATGATGAAGATGTGTTCTTAGGATTGGGAATTGGAAACAAGCGTAAAGCTGATTGGATAAAAAAATGAACAATCTCAAAATGACATAGAAAATGTCAAGAAAACGAGCAAAGAGCCCTTCGTATCCCTGGACTTGAACCTCTCTGTGGAGGAGAACGATGTTGCTGACTTCTCTACTGCTAGTCAAGGCCACACTGAGGCATGCCAGGGATCCCGTGACTCAAGTGATCTGACAGTTGAACAAGGTCTTAAATGTGCTGGAGCTGGTGAACTTTACAAGGATCTTTCTGATTCAGTAGATGAGAAAGTTGTATTCAAGCCTTTTGACTTTGAAAGGCTTGCGGATAAAATCATTGAGTCCATTAGTGCAAAGTTCTTCAGCATAATTGGAACTGAGGGCCTCATGGAGATAGACATAAAAGCCCTCGAGCAGATGCTTGCTTGCGTTTGGTTTTCCTCTGATGGAATGGAGATGTTCGAGAACTGGGTTGAACGGGTGCTTGTACGTTGTTTAACAGAAATAAGTACATCATGTGCTGTTTCAGTTGACACAGTCGTTAAACTTGTTCTTGAGAAGGATCGTTTTGCTGGAGAAAGGCGACCTGGAGTTCCATCCCTCCCCAGCAATATTTCAGTAAATATAAGAACTAAGACCGGCCAAAAGGCAGGGGCTATCTAAATGTTGCTGCTTTTCTCAATGGAAACCACTTGTCTAGTATCAAGACTGCTTTGCAAACCCCATTGAAATTAGGGGTTGTCCATAATTATTCAATTTTTTTTATAAAACAGCGGCACTAAATTTCTGCTTACAACGAGGCAAGCCTGGAGACTACGTTTGTACTTTCTAGTTAATTGAGGGTAACTAGCTACATAAAACTGTAAAAGCATCATGCAGAATCTAGAATAGTTTCAATCCTGCATCTTCAAATCAAACACAGAACTGAATCGTGACCCAGCCTTCGATGAAACAGTGGATCATATAGTTCTAGCTCCGGAAGAAATTAGCTATTCAAGGACATTTTACATTGTGACTACTACCATTTTTTGCACTACAGAGAAGTGCACATCTTTTCCAAACAACAGAGCAGGGCATTTATTTGGCTACACTGAAGATCAGTCCTGTATTTATTAACCTGGCACCGAGGCTGTATTTTGTGTATTTTGTATCCCTTGAATAAGGGCACTCAAGGTAGAACACACGGGTGGGACTACTGCAAATCGATTCCAAACCTCAAAATTCAAGAAGCCAGAGCTGGTGATGGGACTTGGGTTCAGACAAAACTGTTGTAAAGTTGTTATTTATTGGGGAGTCCGAATTCCTCTTAATTCCAAAAGTTGCAGCAATGTACGAATGAGAAAATCTCAAATATTGTGTGTTCCTTTGGATGGAACTGCTTAAGACT

Fln Alignment:

Contig1000___GHGQTTPLHVAATLLAAPASHLRQACIRSHPNSSHPLQCRALELCFSVALDRLPAAQGVVPGTEPPISNALMAALKRAQAHQRRGCPEQQQQPLLAVKVELEQLIVSILDDPSVSRVMREASFSSPAVKATIEQSINMANXXXXXXXXXXAIDRVGFRLGSSPSILGRSQQHFDCSNRSLERDDASSRPISQRNPYLNPRLQSAGVAAEASGNRNDEIRRLIEILQKVKKRNPVLVGEK--EPEAVIKELVHRIEKGETPAQLQGVQILPIETEISAFCTGNKDKDHITTKFRELDQMVEGRLNKGVILNVGDLRWLVEQPKAGAPIGLSASSSMQQVVTKLGQLLARYGPTGRLWLIGVATCETY
B8LQS4______________GHAQYTPVHLAIALIEDKAGILRQA-ISSAAGGDETVE--AVLRVLRQALKKIPS-QDPAPDSIPP-NTSLIKSIRRAQSSQK-----SKGDTHLAV----DHLILGVLEDSQVSDCFREAGVSAARVKSEVEKLRGEGK-------------KVDTASGDT------NFQALKTYGRDLVEDAGKLDPVI---------------------GRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLLDVRLIAL--DMGALVAGAKYRGEFEERLKSVLKEVEDAQGK-VILFIDEIHLV---------LGAGRTEGSMDAANLFKPMLAR----GQLRCIGATTLEEY

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
3330	66		33		0.997452
3513	11	88			0.923564
3516	88		11		0.923564
3517			11	88	0.923564
3583	42			57	1.0
3591		71		28	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
374	388	AGC AGC AGC AGC AGC	15

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain