SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene997

Length: 1221 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene997

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	plastid transcriptionally active 13 [Arabidopsis thaliana] gb\|AAK83588.1\| AT3g09210/F3L24_8 [Arabidopsis thaliana] gb\|AAM91077.1\| AT3g09210/F3L24_8 [Arabidopsis thaliana] gb\|AEE74738.1\| plastid transcriptionally active 13 [Arabidopsis thaliana]	-	-	1.0e-31	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%

Source	GOs	Term	Type	e value	Identity
Sma3	transcription elongation regulator activity	GO:0003711	Molecular Function	0.0	-
Sma3	positive regulation of transcription elongation from RNA polymerase II promoter	GO:0032968	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription antitermination protein, NusG, N-terminal	IPR006645	-	0.0	-
Sma3	Translation protein SH3-like, subgroup	IPR014722	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQH7

Fln msg: your sequence is shorter than subject: 274 - 379

Fln protein: DDLSKAFASEFPDIEFQAYLPEIPSRRKSKNGSYSESKKRILPGHVFIHCPLNKEIHDFIRNTPRVRGFVGQKVGSMIRQMIKPKPVPLSEMEEIFRKVKEEQEASDIDIQKELLKEERNKTDDDSTGQDLLEDLEGTDVHMKNDANSHRESATDKGGKKVGSSGTKSNSRKFPVVAADSMDYSNIPSAEGLKKQRNNGRKITLSRIQDSMLAAGSPVRVISGAFAGFTGHLKEIDADTGKAKVMLMMFGNELPVDMEIDQVECEPCQGSNEP*

Protein Length: 275

Fln nts: AGATGATCTCTCCAAAGCATTTGCTTCTGAGTTTCCTGATATCGAATTTCAGGCCTATTTACCAGAGATACCTTCCAGAAGGAAATCGAAAAATGGATCTTACTCAGAAAGTAAGAAGAGAATACTTCCTGGGCATGTTTTTATACATTGTCCCCTAAACAAGGAGATACATGACTTCATAAGAAATACTCCACGGGTACGTGGTTTTGTTGGGCAGAAGGTCGGCAGTATGATCAGGCAGATGATCAAACCTAAGCCTGTTCCTTTATCTGAAATGGAAGAAATATTTAGGAAAGTTAAAGAAGAACAAGAGGCTTCTGACATTGACATTCAAAAGGAGTTATTGAAGGAAGAGAGGAATAAAACAGATGATGATTCAACTGGACAGGATCTTTTGGAAGATTTGGAAGGGACAGATGTCCACATGAAAAATGATGCCAATTCTCACAGAGAGTCTGCCACTGATAAAGGTGGAAAAAAAGTTGGTTCTTCTGGTACAAAATCTAATTCCAGGAAATTCCCAGTGGTTGCTGCCGATTCAATGGACTATTCTAATATCCCTTCTGCAGAGGGGCTGAAGAAGCAGAGAAACAATGGTAGGAAAATCACACTCTCCAGAATACAAGATTCTATGCTAGCTGCAGGGTCTCCAGTCAGGGTTATTTCAGGAGCTTTTGCTGGGTTTACTGGCCATCTGAAAGAGATTGATGCAGACACTGGCAAGGCAAAAGTAATGCTTATGATGTTTGGAAATGAATTACCAGTGGACATGGAAATTGATCAAGTTGAATGTGAACCATGTCAGGGTAGTAATGAACCTTAA___TTGGTTTCTCTTAACAAACCTGATTTCAGTTTAAATGATAGGGCTTACAGGTACTTCTCACCCTCTTTGGAAAGAGTAAGGTCGTAAGCATGCATACGAGTCATCTACCATTGAACGTGCTATTAGAAGGCTTTCTGTCAATTAGCAAGTTTTCTTCATTGATTGAGTTCTGAATGTAGCGTACAGATTCTTTCTCTAATTATAAACATCTATATCATGAGTAATTAATGAGATCCATGGACGATTCCATGGAGTTGTTTTACATGAAGGAATGAATCTTGAAGGAATGTTCAAGCTAAAATATTTTCATAATTAGCGAACATATTTCCTTGCATTGGACAATTTTCATTTTGAGCTTAACTAAGGTCTTTGGACTGAATAAATTTATTTATTTAGTT

Fln Alignment:

Contig997___DDLSKAFASEFPDIEFQAYLPEIPSRRKSKNGSYSESKKRILPGHVFIHCPLNKEIHDFIRNTPRVRGFVGQKVGSMIRQMIKPKPVPLSEMEEIFRKVKEEQEASDIDIQKELLKEERNKTDDDSTGQDLLEDLEGTDVHMKNDANSHRESATDXXXXXXXXXXXXXXXRKFPVVAADSMDYSNIPSAEGLKKQRNNGRKITLSRIQDSMLAAGSPVRVISGAFAGFTGHLKEIDADTGKAKVMLMMFGNELPVDMEI
A9NQH7_____________EDLSKAFPSEFPDIEFQAYLPEIPSRRKLKNGSYSESKKRMFPGYLFIRCPLNKEIHDFIRNTPRVRGFVGRKVGSMIRQMIKPKPVPIAEMEETFRKVKEEQEAYDIEIQEELLKEEGNKTDDDSIGQDLLEDLEGTDVRMKKDANSHRESATDKGGKQVGSIGTKSNSKKFPVVAADSTDSSNMPSVKGLKKQRNSGRKVALSRKQDSMLVAGSPVRVISGAFTEFTGHLKEIDADAGKAKLMLMMSGHELPVNMEI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1007			46	53	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1206	1218	ATTT ATTT ATTT A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain