SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene990

Length: 2342 nt

UniGene Fasta

>sp_v3.0_unigene990
CGATCTTCTTGGTAGAGTAGCAAATGATGTTGAAACAGAGCAGATTGTTCTGGATGAGGATGGAGGAATTGGGAAAGGGAAAATGAGCTCTGTAGTTCAGATGCGAGGGTCAATACCCCTTTTCTGGTCTCAGGAAGTTTCACGTTTGAGTCCAAAGCCTGACATTATATTACACAGATATGATCCAACTTATCAAGCAACAAAGCTGCATTTTGAGGATCTTTGTAAGCGATACGGCAATCCAATAATTGTCTTGAATTTAATCAAGACTGTTGAAAAAAGGCCCCGGGAAATGATGCTTCGTCGGGAATTTGCCAGTGCTGTAGGATATCTGAATCAGATTCTTTCAGAAGAAAATCGCCTCAAGTTTATCCACTGGGACTTTCACAAGTTTGCAAAAAGTAAATCTGCAAATGTCCTTGCAGTTTTGGGTGGTGTGGCCAGCGAAGCACTTGATCTGACTGGATTCTATTACAGCGGGAGGCCTTCTGCTAATAAAAGACAACTTGTGAATCAGCTTAGTCGAACTAATATTACAAGAGATGCTTCTGTAGGCGATTTTAGGTGCAGTTCATCAGGGATAGATCCTGGGAAGGTTGGAAGTAGAAATGATTTTGGAAGCTTTTCGTCTACACGAGATGGAGATTGTGATGTTGAACAATGCCCAAAAAAGGATGCAGACAATGCAACAGAACCCAGATTTCAGAGTGGAGTGCTCCGCACAAATTGCATTGACTGTCTGGATCGTACTCTTGTGGCACAATTTGCTTATGGTCTGGAAGCTTTAGGCCGTCAGTTGTATGCTATGGGCTTGTGCAATGGACCTAAACTGGATCCTGATAGTAGCATTGCTGCTACACTTATGGAGATGTACCGGAGTATGGGTGATGCTCTTGCAATTCAGTATGGCGGTTCTGCAGCTCATAATACTGTGTTCACAGAGAGGCCAGGAAAGTGGAAAGCTACTGCACAATCTCGTGAGTTTTTAAAATCAATCAAACGATATTATAGCAATGCTTACACTGATGGGGAAAAGCAGGATGCGATAAATTTATTCCTTGGATACTTTCAGCCACAAGAAGGGAAGCCTGCTTTGTGGGAACTTGATTCAGATTATTATCTTCATGTTGGGGGGAATGGAGATGAAGCAATCACTGATAATCAATTGCTACCAGAAAATAACTCAACAGCAGTGCAGCATCCATCAAATGTTCTTGCCCCTGTTCCAGCATGCAGAGAAGATTATTCACGAATGAAGTTGACTTCATTTGATAAACTAATGCAAACAATATATAGTTCAATAAAGAATGTCCGAATTTATGGTGAGCCTGACTTAAAGGCTGGCCCTGCCACAGGCAATTCTGGAATGGCTCCAGATGCAGCTGAAATACAATTGAAAAGTCCAAACTGGCTTTTTGGTCAAAGAAAAGTTGAAGGAAAAGGGCAATTGGGTAAAATTGCTACCCGAGGTAGTGTACAGTACAGGAAAAGAGACGAAGAGGTCAATGATGATTGTGATGAGTTGAAATGTTTGTTCTCTGGAGACTCATATCAAGAAGCTATTTTTGAGAGTTACCTTGCCATTGCCTCAACAACAGAAGTTGATAACTGGTATGGAAAAGGACTTCTCTTTGATACAGTTGAAGATAGTGAAGCTTACAAACACTATGCCGAATGCTGTCAGGGACCAGCATTGGATCCATTTGGGCATGATGCCGAAAAAGAGCAGTACTATTCAGATGCCTTGTGCCAGGTTTTGAAAGGTCGAAAAGATGAGTCTGTAGAATCAGAAATGGAAGATGCTCTTAATGAGTATGAAAAAATTGGGAGTGATCTAGGAATCAACAACCCATCTCTGTCTTCTATTCTTGTGGAACAGAAGACATGTAAAGTTAAAGGTTGAAATCAGTGCTTTTTATCAGCTGCTAGGGTGCACATTATAGCTAGCCAAAATTTGCAGTCAGTATCTGGTATTAAGCTGCGTTACAGTAAAAGCTGCATCATGATATTATTATGTAAGAAATATTTGAAGAAGTATTTAACAAATATATGATAGTTGTAAAGAATGTTCACAGTCTATTTAAAAGGAAATACTCGAAGATATGTAATGTTAAAGGTCGAAAGCAATGATTTTTCTCAGCTGCAGAGGAGCACATTATAGCTCGCGAAAATTTGGAATCAGTACCCTGTATTAAGGTGTGTTACAGTACAAGTTGCATCATGATATTATCATGTAACAAATATTTGAAGAAGTATTTAACAAATATACAATAGCTGTAAAGATTGTTCACAGTTTATTTAAAAGGGAATCCTCAAAAATGAAACCGGCTATTTGCTTTAAG

Ace file of the UniGene sp_v3.0_unigene990

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phosphoinositide phosphatase-like protein [Arabidopsis thaliana] gb\|AAQ13339.1\|AF266460_1 FIG4-like protein AtFIG4 [Arabidopsis thaliana] gb\|AAP49834.1\| SAC domain protein 1 [Arabidopsis thaliana] gb\|AEE30261.1\| phosphoinositide phosphatase-like protein [	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Sma3	Phosphoinositide 5-phosphatase, putative	-	-	5.199e-13	-

Source	Gene names
Sma3	AT3G14205; At1g17340; At1g22620; At3g14205; At3g43220; At5g20840; CHLREDRAFT_102339; F12K8.3; F28G4.21; F7K15_70; GSVIVT00002161001; GSVIVT00016372001; GSVIVT00034019001; LOC_Os03g08430; MICPUN_88652; OJ1311_D08.7; OSJNBa0021M10.3; OSJNBa0032G08.19; Os02g

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	GO:0004439	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	cytoskeleton organization	GO:0007010	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	plant-type cell wall biogenesis	GO:0009832	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Synaptojanin, N-terminal	IPR002013	-	0.0	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G22620.1	ATSAC1 Phosphoinositide phosphatase family protein chr1:7997889-8002787 REVERSE LENGTH=912	64%
RefSeq	Arabidopsis thaliana	NP_173676.2	phosphoinositide phosphatase-like protein [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002325974.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL30

Fln msg: your sequence is longer than subject: 634 - 573

Fln protein: DLLGRVANDVETEQIVLDEDGGIGKGKMSSVVQMRGSIPLFWSQEVSRLSPKPDIILHRYDPTYQATKLHFEDLCKRYGNPIIVLNLIKTVEKRPREMMLRREFASAVGYLNQILSEENRLKFIHWDFHKFAKSKSANVLAVLGGVASEALDLTGFYYSGRPSANKRQLVNQLSRTNITRDASVGDFRCSSSGIDPGKVGSRNDFGSFSSTRDGDCDVEQCPKKDADNATEPRFQSGVLRTNCIDCLDRTLVAQFAYGLEALGRQLYAMGLCNGPKLDPDSSIAATLMEMYRSMGDALAIQYGGSAAHNTVFTERPGKWKATAQSREFLKSIKRYYSNAYTDGEKQDAINLFLGYFQPQEGKPALWELDSDYYLHVGGNGDEAITDNQLLPENNSTAVQHPSNVLAPVPACREDYSRMKLTSFDKLMQTIYSSIKNVRIYGEPDLKAGPATGNSGMAPDAAEIQLKSPNWLFGQRKVEGKGQLGKIATRGSVQYRKRDEEVNDDCDELKCLFSGDSYQEAIFESYLAIASTTEVDNWYGKGLLFDTVEDSEAYKHYAECCQGPALDPFGHDAEKEQYYSDALCQVLKGRKDESVESEMEDALNEYEKIGSDLGINNPSLSSILVEQKTCKVKG*

Protein Length: 635

Fln nts: CGATCTTCTTGGTAGAGTAGCAAATGATGTTGAAACAGAGCAGATTGTTCTGGATGAGGATGGAGGAATTGGGAAAGGGAAAATGAGCTCTGTAGTTCAGATGCGAGGGTCAATACCCCTTTTCTGGTCTCAGGAAGTTTCACGTTTGAGTCCAAAGCCTGACATTATATTACACAGATATGATCCAACTTATCAAGCAACAAAGCTGCATTTTGAGGATCTTTGTAAGCGATACGGCAATCCAATAATTGTCTTGAATTTAATCAAGACTGTTGAAAAAAGGCCCCGGGAAATGATGCTTCGTCGGGAATTTGCCAGTGCTGTAGGATATCTGAATCAGATTCTTTCAGAAGAAAATCGCCTCAAGTTTATCCACTGGGACTTTCACAAGTTTGCAAAAAGTAAATCTGCAAATGTCCTTGCAGTTTTGGGTGGTGTGGCCAGCGAAGCACTTGATCTGACTGGATTCTATTACAGCGGGAGGCCTTCTGCTAATAAAAGACAACTTGTGAATCAGCTTAGTCGAACTAATATTACAAGAGATGCTTCTGTAGGCGATTTTAGGTGCAGTTCATCAGGGATAGATCCTGGGAAGGTTGGAAGTAGAAATGATTTTGGAAGCTTTTCGTCTACACGAGATGGAGATTGTGATGTTGAACAATGCCCAAAAAAGGATGCAGACAATGCAACAGAACCCAGATTTCAGAGTGGAGTGCTCCGCACAAATTGCATTGACTGTCTGGATCGTACTCTTGTGGCACAATTTGCTTATGGTCTGGAAGCTTTAGGCCGTCAGTTGTATGCTATGGGCTTGTGCAATGGACCTAAACTGGATCCTGATAGTAGCATTGCTGCTACACTTATGGAGATGTACCGGAGTATGGGTGATGCTCTTGCAATTCAGTATGGCGGTTCTGCAGCTCATAATACTGTGTTCACAGAGAGGCCAGGAAAGTGGAAAGCTACTGCACAATCTCGTGAGTTTTTAAAATCAATCAAACGATATTATAGCAATGCTTACACTGATGGGGAAAAGCAGGATGCGATAAATTTATTCCTTGGATACTTTCAGCCACAAGAAGGGAAGCCTGCTTTGTGGGAACTTGATTCAGATTATTATCTTCATGTTGGGGGGAATGGAGATGAAGCAATCACTGATAATCAATTGCTACCAGAAAATAACTCAACAGCAGTGCAGCATCCATCAAATGTTCTTGCCCCTGTTCCAGCATGCAGAGAAGATTATTCACGAATGAAGTTGACTTCATTTGATAAACTAATGCAAACAATATATAGTTCAATAAAGAATGTCCGAATTTATGGTGAGCCTGACTTAAAGGCTGGCCCTGCCACAGGCAATTCTGGAATGGCTCCAGATGCAGCTGAAATACAATTGAAAAGTCCAAACTGGCTTTTTGGTCAAAGAAAAGTTGAAGGAAAAGGGCAATTGGGTAAAATTGCTACCCGAGGTAGTGTACAGTACAGGAAAAGAGACGAAGAGGTCAATGATGATTGTGATGAGTTGAAATGTTTGTTCTCTGGAGACTCATATCAAGAAGCTATTTTTGAGAGTTACCTTGCCATTGCCTCAACAACAGAAGTTGATAACTGGTATGGAAAAGGACTTCTCTTTGATACAGTTGAAGATAGTGAAGCTTACAAACACTATGCCGAATGCTGTCAGGGACCAGCATTGGATCCATTTGGGCATGATGCCGAAAAAGAGCAGTACTATTCAGATGCCTTGTGCCAGGTTTTGAAAGGTCGAAAAGATGAGTCTGTAGAATCAGAAATGGAAGATGCTCTTAATGAGTATGAAAAAATTGGGAGTGATCTAGGAATCAACAACCCATCTCTGTCTTCTATTCTTGTGGAACAGAAGACATGTAAAGTTAAAGGTTGA___AATCAGTGCTTTTTATCAGCTGCTAGGGTGCACATTATAGCTAGCCAAAATTTGCAGTCAGTATCTGGTATTAAGCTGCGTTACAGTAAAAGCTGCATCATGATATTATTATGTAAGAAATATTTGAAGAAGTATTTAACAAATATATGATAGTTGTAAAGAATGTTCACAGTCTATTTAAAAGGAAATACTCGAAGATATGTAATGTTAAAGGTCGAAAGCAATGATTTTTCTCAGCTGCAGAGGAGCACATTATAGCTCGCGAAAATTTGGAATCAGTACCCTGTATTAAGGTGTGTTACAGTACAAGTTGCATCATGATATTATCATGTAACAAATATTTGAAGAAGTATTTAACAAATATACAATAGCTGTAAAGATTGTTCACAGTTTATTTAAAAGGGAATCCTCAAAAATGAAACCGGCTATTTGCTTTAAG

Fln Alignment:

Contig990___DLLGRVANDVETEQIVLDEDGGIGKGKMSSVVQMRGSIPLFWSQEVSRLSPKPDIILHRYDPTYQATKLHFEDLCKRYGNPIIVLNLIKTVEKRPREMMLRREFASAVGYLNQILSEENRLKFIHWDFHKFAKSKSANVLAVLGGVASEALDLTGFYYSG--------RPSANKRQLVNQLSRTNITR
B8LL30_____________DLEGHVANFIETEQL-LEVDGFI-----TSYLQVRGSIPVLWEQIVD-LTYKPKLNIINTDETPKVVERHFRDLVQRYG-PVLAVDL---ADRKGNEGPLSLAYADAVQSLKHI-------RYISFDFHRICGLVHFQRLQLLYEQLAEDLKKQGYFLTNPAGEMIEEQKGIVRVNCIDCLDRTNVSQ

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
630		71		28	1.0
687	87			12	0.992554
873		11		88	0.923564
874			88	11	0.923564
910	16			83	0.994512
979	16			83	0.994512
981	16		83		0.994512
983			80	20	0.995493
1180	87			12	0.992554
1600	75			25	0.996473
1601		75	25		0.996473
1602	75		25		0.996473
1721		80	20		0.995493
1722		80	20		0.995493
1781	85		14		0.993533
2125	33		66		1.0
2169	40	60			1.0
2198		40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain