SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene969

Length: 2206 nt

UniGene Fasta

>sp_v3.0_unigene969
CCTAAATTCCAGCTTTTCCTATATAAGGACCCCAAGAAAGGTTCGAGAAGTTCCTGTGTTTGAACATTCTGGTGTACGCTGAAGAAGCGAATTTAGTGCCAAAAAAGACTCTGTGCGGAGGTAAGTTTGGCCGTTTCTTGAGACTGTTTGACGCTTTCAAAGCTAGGACTGGCGCATAAAGAGCAAGTATTCGAGATTTTAGCGGCTCTTTCTCGCGTTTAGACGGTTAGAACTTGTTGCATTTGGAGAAATTGGAAATCGAAATTTTTAAAAGGATTTATGGTTAGGAGTTATTGCCTCTTACGCACGTCCTCTGCTCTGTTCTAATTTGTTTTTTTTCGTATTTTAGGCGTTCAAGGGATTTTTGGTGCGTTGTTGTTTTTTGTTATTCTGGTGTTCTGTTCTGTTTTGATTTTTTTTCTGTGAAAGACTCTGTTTTTAGGCCTTTGAAAGTTCCTGGCGTTTCTCGAGCTTTCCGCCAGTGCCTTTCTTGTGTCTTATTTGGAGGATTTTGCCAGTTTAGAGACAAGATTTGACAAATTCGTGTGAATAAGTCGTCCTCGAGATAAATTTTACGTAATTCAGACCTTCTGTCGGTTATTCGAGGGGGATTTCATCGGATTGACCCGAAAATTTTGTAAAGTCAAATTGAGAAGGGCTCTGTTTTAGGCACAGGTTTTCCTTTTCTGTCTTCCTGTGTTTTGAAGCGATGTCGCTGGTGCTGTTCCGTAATGTTAAATGATAATATGTCCTGCTCCTCTGTTGGCGATTCCTGAGGCTTGAAATCGAGCTCTCGGGCTGTGCCATGGCTCATTCGGCGAAACAAAACAATGATGGAACGCCGGTCACGGTAGAGTCTCACCGATCTGTGCCGGCTCCGTTTCTCATTAAGACATATCAGCTGGTGGATGATTCGAACACGGATGATATAATTTCATGGAATGAAGCGGGTACAACGTTTATTGTTTGGCGGCCTGCAGAATTCGCCAGAGATTTATTGCCGAATTACTTCAAGCACAACAATTTCTCAAGTTTTGTTCGCCAACTAAATACATATGGCTTTCGGAAGATTGTACCAGACAGATGGGAGTTCTCAAATGAGTTTTTTCGCAAGGGGGAAAAGCAGCTACTTTCTGAAATACACAGAAGAAAAGGTCTAATACAACCTCCTCCACCACCTGAGAACAGATCTATTTCACCATCTAACTCTGGTGATGAGCAAACGTGGTCTTCCACCTCCTCTCCTAACTCTTCCACGGGGGTGGATGCTCTTAGCCATAAGAATGCAATTGAAGAAAATGAGAAACTGAGAAAGGAAAATCTGTTATTGGTATCTGAGCTGACACAAATGAAGAAGCTCCACAGCCAGCTTTTGCTCTTCTTATCCAGGCATGTAAATATCACATCAGCAGATCATGTTGCCAATTTTCTGTCCCAAAATGTTGGTCCTTCTGAAGGGTTGTCAATGTTGGCACGGTTAAAAGATTATTTGGAACAATATGGAGGAGAGGAGATTTCAAGAGATTTTCCTGGTAGCTCCTTGAGCTCGGGAGTTTCTGTGGCAAATGATGACCCTTTTGTTTCAGGCTCGGCAAAAGAAAGCATGGCCTCAAAGAGGCCACCTTTTGTAGATGGTGCATGTAGAGAAGTAGGTAGGAAAAGTTACATTTCTGTAAAGATAGAAGATGATGACGAGAAAGGAAACCCCAAGCTGTTTGGCGTACCTCTGCTTCCTAGCAAAAGACCCCTTCCAGGATCTAACGATAATGGGCAACCTGAACCGATGATTCGCAAAATTGGAAGGTGTGCCAACTGATTTCACTCCCACAAGGGAGGGTTTATCTTTGTTTTGAACTACGCTCTCTGTTTTTCCTGTAGCCAAAATGGTTGCAGCTGAAGAAAATTACATCTCCGGGAAAATGCCTGCTGTAAGGACTTAAACCTATCGTTTTATATTTATATGGTGATCTTTACTATATGTTAACGGTCAATCTATGTTGATCTTATATCTATATATATGTTTCTGGCCAATTTTTGTCAAGAATTCCAGGGCATGAATGCTTCTTATGAGAGCATTGCGCTTCTTGTAACAGCTGTAAATTTTTTGAATTCTGAATCACCTCATGAAACAAATTGTGGTGTAATTAAACTATAGATGTGAAACATCATTTCATTTTATGTGGTATACATGCCAAAGTCTGACATG

Ace file of the UniGene sp_v3.0_unigene969

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heat shock transcription factor (HSF) [Glycine max]	-	-	1.4013e-45	78%
FL-Next	sp=Heat stress transcription factor B-4d; Oryza sativa subsp. japonica (Rice).	-	-	0.0	68%
Sma3	Heat shock factor protein, putative	-	-	4.809e-12	-

Source	Gene names
Sma3	23.t00064; At1g32330; At1g46264; At2g41690; At3g02990; At3g24520; At3g51910; At3g63350; At4g13980; At4g36990; At5g03720; At5g43840; At5g45710; At5g54070; At5g62020; B1060H01.5; B1129G05.5; B1342C04.35; CHLREDRAFT_122706; F13E7.6; F16M2.200; F17C15.140; F2

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	positive gravitropism	GO:0009958	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	lateral root development	GO:0048527	Biological Process	-
Sma3	fruit morphogenesis	GO:0048530	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock factor (HSF)-type, DNA-binding	IPR000232	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G46264.1	AT-HSFB4, HSFB4, SCZ heat shock transcription factor B4 chr1:17224904-17226183 FORWARD LENGTH=348	80%
RefSeq	Arabidopsis thaliana	NP_175142.1	heat stress transcription factor B-4 [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002327155.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q10KX8

Fln msg: your sequence is longer than subject: 337 - 305

Fln protein: MAHSAKQNNDGTPVTVESHRSVPAPFLIKTYQLVDDSNTDDIISWNEAGTTFIVWRPAEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFSNEFFRKGEKQLLSEIHRRKGLIQPPPPPENRSISPSNSGDEQTWSSTSSPNSSTGVDALSHKNAIEENEKLRKENLLLVSELTQMKKLHSQLLLFLSRHVNITSADHVANFLSQNVGPSEGLSMLARLKDYLEQYGGEEISRDFPGSSLSSGVSVANDDPFVSGSAKESMASKRPPFVDGACREVGRKSYISVKIEDDDEKGNPKLFGVPLLPSKRPLPGSNDNGQPEPMIRKIGRCAN*

Protein Length: 338

Fln nts: CCTAAATTCCAGCTTTTCCTATATAAGGACCCCAAGAAAGGTTCGAGAAGTTCCTGTGTTTGAACATTCTGGTGTACGCTGAAGAAGCGAATTTAGTGCCAAAAAAGACTCTGTGCGGAGGTAAGTTTGGCCGTTTCTTGAGACTGTTTGACGCTTTCAAAGCTAGGACTGGCGCATAAAGAGCAAGTATTCGAGATTTTAGCGGCTCTTTCTCGCGTTTAGACGGTTAGAACTTGTTGCATTTGGAGAAATTGGAAATCGAAATTTTTAAAAGGATTTATGGTTAGGAGTTATTGCCTCTTACGCACGTCCTCTGCTCTGTTCTAATTTGTTTTTTTTCGTATTTTAGGCGTTCAAGGGATTTTTGGTGCGTTGTTGTTTTTTGTTATTCTGGTGTTCTGTTCTGTTTTGATTTTTTTTCTGTGAAAGACTCTGTTTTTAGGCCTTTGAAAGTTCCTGGCGTTTCTCGAGCTTTCCGCCAGTGCCTTTCTTGTGTCTTATTTGGAGGATTTTGCCAGTTTAGAGACAAGATTTGACAAATTCGTGTGAATAAGTCGTCCTCGAGATAAATTTTACGTAATTCAGACCTTCTGTCGGTTATTCGAGGGGGATTTCATCGGATTGACCCGAAAATTTTGTAAAGTCAAATTGAGAAGGGCTCTGTTTTAGGCACAGGTTTTCCTTTTCTGTCTTCCTGTGTTTTGAAGCGATGTCGCTGGTGCTGTTCCGTAATGTTAAATGATAATATGTCCTGCTCCTCTGTTGGCGATTCCTGAGGCTTGAAATCGAGCTCTCGGGCTGTGCC_-_ATGGCTCATTCGGCGAAACAAAACAATGATGGAACGCCGGTCACGGTAGAGTCTCACCGATCTGTGCCGGCTCCGTTTCTCATTAAGACATATCAGCTGGTGGATGATTCGAACACGGATGATATAATTTCATGGAATGAAGCGGGTACAACGTTTATTGTTTGGCGGCCTGCAGAATTCGCCAGAGATTTATTGCCGAATTACTTCAAGCACAACAATTTCTCAAGTTTTGTTCGCCAACTAAATACATATGGCTTTCGGAAGATTGTACCAGACAGATGGGAGTTCTCAAATGAGTTTTTTCGCAAGGGGGAAAAGCAGCTACTTTCTGAAATACACAGAAGAAAAGGTCTAATACAACCTCCTCCACCACCTGAGAACAGATCTATTTCACCATCTAACTCTGGTGATGAGCAAACGTGGTCTTCCACCTCCTCTCCTAACTCTTCCACGGGGGTGGATGCTCTTAGCCATAAGAATGCAATTGAAGAAAATGAGAAACTGAGAAAGGAAAATCTGTTATTGGTATCTGAGCTGACACAAATGAAGAAGCTCCACAGCCAGCTTTTGCTCTTCTTATCCAGGCATGTAAATATCACATCAGCAGATCATGTTGCCAATTTTCTGTCCCAAAATGTTGGTCCTTCTGAAGGGTTGTCAATGTTGGCACGGTTAAAAGATTATTTGGAACAATATGGAGGAGAGGAGATTTCAAGAGATTTTCCTGGTAGCTCCTTGAGCTCGGGAGTTTCTGTGGCAAATGATGACCCTTTTGTTTCAGGCTCGGCAAAAGAAAGCATGGCCTCAAAGAGGCCACCTTTTGTAGATGGTGCATGTAGAGAAGTAGGTAGGAAAAGTTACATTTCTGTAAAGATAGAAGATGATGACGAGAAAGGAAACCCCAAGCTGTTTGGCGTACCTCTGCTTCCTAGCAAAAGACCCCTTCCAGGATCTAACGATAATGGGCAACCTGAACCGATGATTCGCAAAATTGGAAGGTGTGCCAACTGA___TTTCACTCCCACAAGGGAGGGTTTATCTTTGTTTTGAACTACGCTCTCTGTTTTTCCTGTAGCCAAAATGGTTGCAGCTGAAGAAAATTACATCTCCGGGAAAATGCCTGCTGTAAGGACTTAAACCTATCGTTTTATATTTATATGGTGATCTTTACTATATGTTAACGGTCAATCTATGTTGATCTTATATCTATATATATGTTTCTGGCCAATTTTTGTCAAGAATTCCAGGGCATGAATGCTTCTTATGAGAGCATTGCGCTTCTTGTAACAGCTGTAAATTTTTTGAATTCTGAATCACCTCATGAAACAAATTGTGGTGTAATTAAACTATAGATGTGAAACATCATTTCATTTTATGTGGTATACATGCCAAAGTCTGACATG

Fln Alignment:

Contig969___IELSGCAMAHSAKQNNDGTPVTVESHRSVPAPFLIKTYQLVDDSNTDDIISWNEAGTTFIVWRPAEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFSNEFFRKGEKQLLSEIHRRK
Q10KX8_____________VERCGGEMVVSMERSHGRSTTTAAAVTAAPAPFLSKTYQLVDDPSTDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLSEIHRRK

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1236	10	90			0.90298
1237		90		10	0.90298
1238			10	90	0.90298
1239		90		10	0.90298
1720		88		11	0.923564
1757		25		75	1.0
1872		40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain