SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene958

Length: 2361 nt

UniGene Fasta

>sp_v3.0_unigene958
TGTAAATGCTTTAAGCTCGCACCCGCACATTGATACCTTTCACTGCCGTGAACAAATTGACCTTAAAACTCTGCGTTTGATATTTAAGTTTCTGTCGGAACAAACCCTTTTGTTCCTCTGAAAAATAATTTTCTCCTCGCACCTTTTAAGTGAAAAGACCACTTCTGTCAAAACCCCTATAAACCCACCCGCACCTTCGCAAGGTACCCACTCACTTTCATCTGTGCTGTGGTGGAGCAAGGACTTTAGAATTCCCCTAGGAGAGCTGAACAAGGAGGAGTGCTGTGGTGGAGCGAGGACTTTAGAATTCCGCTAGGAGATCTGAACAAGGAGGAGAAGAGATGGCTTCTGCAATGCGTGGAGCTCTCGGAAGCGCTCTGCGCAGGGCAAATGCGAGCCAAAGAAGGTTGTACTCAACAACAGGCATTAACTCCCCGCCTCGAAAGGTGGCTGTACTCGGTGCAGCGGGAGGAATTGGGCAGCCTCTTGCTCTGCTGATGAAACTTAACCCTCTTGTCTCTGATCTCGCTCTCTATGATATTGCTGGCACGCCTGGAGTTGCAGCTGATGTTGGTCACGTCAATACTCGAGCACAGGTTGCAGGATATATGGGCGATGATCAACTGGGTAAGGCATTGGAAGGATCAGATGTTGTGATAATTCCTGCTGGTGTGCCCCGTAAACCTGGGATGACACGTGACGATCTTTTCAATATTAATGCTGGCATTGTCAAATCCCTTTGTATAGCCATTGCAAAATATTGTCCTGAAGCATTAGTAAACATGATCAGCAATCCTGTAAATTCAACTGTACCCATTGCTGCTGAAGTTTTCAAGAAGGCTGGAACCTATAATGAAAAAAAACTCTTTGGTGTCACCATGCTTGATGTTGTTCGAGCAAAGACTTTCTATGCTGCCAAAGCAGGTGTCCCTGTGGAAGAAGTGAATGTCCCTGTTGTAGGAGGACATGCAGGTGTCACTATCCTTCCTCTCTTTTCACAGGCTACTCCAAAACCAAATGCTAATCTTTCGGATGAGGATATCAAAGCTCTGACTAAGCGTACTCAAGATGGAGGAACTGAAGTTGTTGAAGCGAAAGCTGGAAAAGGTTCTGCAACATTGTCTATGGCGTATGCTGGAGCAATATTTGCTGACGCATGTTTAAAGGGTTTGAATGGAGTGCCAAATATTGTGGAATGTACATATGTTCAGTCAAACATTACTGAATTGCCTTTCTTTGCCTCAAAGGTGAGACTGGGTAAAAGTGGCATTGAGGAGGTTCTGGGGTTGGGCCCCATCTCTGCTTTTGAACAACAGGGGTTGGAAGCATTGAAATCAGAACTCAAGTCTTCTATTGAGAAAGGAGTGAAGTTTGCTACTGCAAACTGAGTCAGGACTCTCCTTGTGGTACTTCAGTGTTTGGTATTTACATTGAAGGAAGCTAAGATACTGCCATTCTGTCATATTGGTTTAGTAGGCACCCTATTGGGGCAGTTAGAGTTTAAATATGCTAGAGCCAGTTTGTGCAGTTTTTGTTGAACATTGCGCAGTATTCCATCCCAGGTCTGCCTTAGAGAAATGAAAATTTCTGTGGTCTTAATAAAGTTGGTAGGAAACACATCGAATTCAACCTTTGAGCTTTTTGAAACAAGAAATACGAGTCACTTTTTATGTTACTGCCTCTTATGTCTGCTCTTCATTTGATTGTTAGTAAAGTCTCGCAAGCCTATCAGGGAAAGTACAATAAGAATGTTTTGCATTTTCCTTGCTTTTGACAGTAATTTTCACTCTTAACCCATGAGGTTTGCGCCAATTGGTTTGTGTGGGTTTTAGTACACATCAGGTCAGTGTTTCAAATCTCATGGGATGGGGTTGAGGGTGGGAACCACCTATGGGGGATGAAAACTGTCTCATGTGGTGTCGAGGCTTGACCGAGCCTCACACATTCCTGGTGACAGCATCCCACAGGTGGGCAGATTGTTCTTCCATTCAACATTGGGGCTGGCCCTGGCGTAGGCTCAGCCTAGTTGGAAAAAGAGAAAAAGCAGCCAAAACCTGGTAATCTAGTTCAAGATACCCAGGTAGTCAACTTACATAAAGCTTTGTTGTTGTTTACCTGTAGATACACAATACTGCCCACAAGCCTGTAGGAATTTGTTATCTTGGAAGGCAGTACTGTTTTCCATTTAGAAGATTGCAGACTGTAGATTTATAGGCATCCATAGTTGTTACATTGGCAGTAAGTTTAATGCAGAGTTTTATATTGGTAGGAAGTATCCAATGCAAGACATGCTGCAGACAGATTTTGCCTTTTGTGTTCTGAGACCCAATATGAGCTGGCTTTGGATTTCATTCCAATGTA

Ace file of the UniGene sp_v3.0_unigene958

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Malate dehydrogenase n=1 Tax=Pinus pinaster RepID=F4MKL8_PINPS	-	-	0.0	79%
FL-Next	sp=Malate dehydrogenase; Pinus pinaster (Maritime pine).	-	-	0.0	82%

Source	ECs	Term	Type	e value	Identity
Sma3	Malate dehydrogenase.	EC:1.1.1.37	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Citrate cycle (TCA cycle)	00020	%
Sma3	Pyruvate metabolism	00620	%
Sma3	Glyoxylate and dicarboxylate metabolism	00630	%
Sma3	Methane metabolism	00680	%
Sma3	Carbon fixation in photosynthetic organisms	00710	%
Sma3	Carbon fixation pathways in prokaryotes	00720	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Biosynthesis of terpenoids and steroids	01062	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	VITISV_004210;

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	L-malate dehydrogenase activity	GO:0030060	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	malate metabolic process	GO:0006108	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	L-lactate/malate dehydrogenase	IPR001557	-	-
Sma3	Lactate/malate dehydrogenase, N-terminal	IPR001236	-	-
Sma3	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	IPR015955	-	-
Sma3	Malate dehydrogenase, active site	IPR001252	-	-
Sma3	Malate dehydrogenase, type 1	IPR010097	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G15020.1	mMDH2 Lactate/malate dehydrogenase family protein chr3:5056139-5057941 FORWARD LENGTH=341	85%
RefSeq	Arabidopsis thaliana	NP_188120.1	malate dehydrogenase 2 [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002305754.1	predicted protein [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: F4MKL8

Fln msg:

Fln protein: MASAMRGALGSALRRANASQRRLYSTTGINSPPRKVAVLGAAGGIGQPLALLMKLNPLVSDLALYDIAGTPGVAADVGHVNTRAQVAGYMGDDQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCIAIAKYCPEALVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTMLDVVRAKTFYAAKAGVPVEEVNVPVVGGHAGVTILPLFSQATPKPNANLSDEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPNIVECTYVQSNITELPFFASKVRLGKSGIEEVLGLGPISAFEQQGLEALKSELKSSIEKGVKFATAN*

Protein Length: 350

Fln nts: TGTAAATGCTTTAAGCTCGCACCCGCACATTGATACCTTTCACTGCCGTGAACAAATTGACCTTAAAACTCTGCGTTTGATATTTAAGTTTCTGTCGGAACAAACCCTTTTGTTCCTCTGAAAAATAATTTTCTCCTCGCACCTTTTAAGTGAAAAGACCACTTCTGTCAAAACCCCTATAAACCCACCCGCACCTTCGCAAGGTACCCACTCACTTTCATCTGTGCTGTGGTGGAGCAAGGACTTTAGAATTCCCCTAGGAGAGCTGAACAAGGAGGAGTGCTGTGGTGGAGCGAGGACTTTAGAATTCCGCTAGGAGATCTGAACAAGGAGGAGAAGAG_-_ATGGCTTCTGCAATGCGTGGAGCTCTCGGAAGCGCTCTGCGCAGGGCAAATGCGAGCCAAAGAAGGTTGTACTCAACAACAGGCATTAACTCCCCGCCTCGAAAGGTGGCTGTACTCGGTGCAGCGGGAGGAATTGGGCAGCCTCTTGCTCTGCTGATGAAACTTAACCCTCTTGTCTCTGATCTCGCTCTCTATGATATTGCTGGCACGCCTGGAGTTGCAGCTGATGTTGGTCACGTCAATACTCGAGCACAGGTTGCAGGATATATGGGCGATGATCAACTGGGTAAGGCATTGGAAGGATCAGATGTTGTGATAATTCCTGCTGGTGTGCCCCGTAAACCTGGGATGACACGTGACGATCTTTTCAATATTAATGCTGGCATTGTCAAATCCCTTTGTATAGCCATTGCAAAATATTGTCCTGAAGCATTAGTAAACATGATCAGCAATCCTGTAAATTCAACTGTACCCATTGCTGCTGAAGTTTTCAAGAAGGCTGGAACCTATAATGAAAAAAAACTCTTTGGTGTCACCATGCTTGATGTTGTTCGAGCAAAGACTTTCTATGCTGCCAAAGCAGGTGTCCCTGTGGAAGAAGTGAATGTCCCTGTTGTAGGAGGACATGCAGGTGTCACTATCCTTCCTCTCTTTTCACAGGCTACTCCAAAACCAAATGCTAATCTTTCGGATGAGGATATCAAAGCTCTGACTAAGCGTACTCAAGATGGAGGAACTGAAGTTGTTGAAGCGAAAGCTGGAAAAGGTTCTGCAACATTGTCTATGGCGTATGCTGGAGCAATATTTGCTGACGCATGTTTAAAGGGTTTGAATGGAGTGCCAAATATTGTGGAATGTACATATGTTCAGTCAAACATTACTGAATTGCCTTTCTTTGCCTCAAAGGTGAGACTGGGTAAAAGTGGCATTGAGGAGGTTCTGGGGTTGGGCCCCATCTCTGCTTTTGAACAACAGGGGTTGGAAGCATTGAAATCAGAACTCAAGTCTTCTATTGAGAAAGGAGTGAAGTTTGCTACTGCAAACTGA___GTCAGGACTCTCCTTGTGGTACTTCAGTGTTTGGTATTTACATTGAAGGAAGCTAAGATACTGCCATTCTGTCATATTGGTTTAGTAGGCACCCTATTGGGGCAGTTAGAGTTTAAATATGCTAGAGCCAGTTTGTGCAGTTTTTGTTGAACATTGCGCAGTATTCCATCCCAGGTCTGCCTTAGAGAAATGAAAATTTCTGTGGTCTTAATAAAGTTGGTAGGAAACACATCGAATTCAACCTTTGAGCTTTTTGAAACAAGAAATACGAGTCACTTTTTATGTTACTGCCTCTTATGTCTGCTCTTCATTTGATTGTTAGTAAAGTCTCGCAAGCCTATCAGGGAAAGTACAATAAGAATGTTTTGCATTTTCCTTGCTTTTGACAGTAATTTTCACTCTTAACCCATGAGGTTTGCGCCAATTGGTTTGTGTGGGTTTTAGTACACATCAGGTCAGTGTTTCAAATCTCATGGGATGGGGTTGAGGGTGGGAACCACCTATGGGGGATGAAAACTGTCTCATGTGGTGTCGAGGCTTGACCGAGCCTCACACATTCCTGGTGACAGCATCCCACAGGTGGGCAGATTGTTCTTCCATTCAACATTGGGGCTGGCCCTGGCGTAGGCTCAGCCTAGTTGGAAAAAGAGAAAAAGCAGCCAAAACCTGGTAATCTAGTTCAAGATACCCAGGTAGTCAACTTACATAAAGCTTTGTTGTTGTTTACCTGTAGATACACAATACTGCCCACAAGCCTGTAGGAATTTGTTATCTTGGAAGGCAGTACTGTTTTCCATTTAGAAGATTGCAGACTGTAGATTTATAGGCATCCATAGTTGTTACATTGGCAGTAAGTTTAATGCAGAGTTTTATATTGGTAGGAAGTATCCAATGCAAGACATGCTGCAGACAGATTTTGCCTTTTGTGTTCTGAGACCCAATATGAGCTGGCTTTGGATTTCATTCCAATGTA

Fln Alignment:

Contig958___MASAMRGALGSALRRANASQ-------RRLYSTTGINSPPRKVAVLGAAGGIGQPLALLMKLNPLVSDLALYDIAGTPGVAADVGHVNTRAQVAGYMGDDQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCIAIAKYCPEALVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTMLDVVRAKTFYAAKAXXXXXXXXXXXXXXHAGVTILPLFSQATPKPNANLSDEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPNIVECTYVQSNITELPFFASKVRLGKSGIEEVLGLGPISAFEQQGLEALKSELKSSIEKGVKFATAN
F4MKL8_____________MSSAMRRLVGSALKNASSSSFKTNVMPRRFYSSGG-SPPPRKVVVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHINSRAEVAGYMGEEQLGTALENANVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCSAIAKYCPEAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYASKAGVPVEEVDVPVVGGHAGVTILPLFSQATPKPNSVLSEEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFASSVLKGLNGEPNIVECSYVQSNVTELPFFASKVRLGEKGVEEVLGLGFLSEYEKQGLEGLKSELKSSIEKGIKSASEN

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1929	25	75			0.996473
1932			25	75	0.996473
1961	16		83		0.994512
2117		20		80	0.995493
2162		25		75	0.996473
2174			83	16	0.994512
2299	25		75		0.996473
2302			75	25	0.996473
2303	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain