SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene954

Length: 2283 nt

UniGene Fasta

>sp_v3.0_unigene954
GAACAATGCCATTACTGGAAGTGACAGGGTGATGCCTATCACAGAAGAGCTGTTAGTGGAGTGCAATTCAAATGGCTTAGAACTACCAAGGCAAGATGAAGGTGTGGATAAAACCTGCTTGAATGGTAAAATGGGTGAGGATATTAACAGGACATCCAGAAACATGGGTTTATCTTTATATGGTCCAAATATTTTGTCTTCATCCGTGAATTCAACATATGAGATATTAGACAAGAAGGATTCTTCTGGAAAAGCAAAAGAAGAGGTAAAACAAGTGGTCTATAAGAATGATCATGTTGGGACTGCAGTTCCTATTTCAGATCTGGAAGAAAATGTAGCGCAGCAAGAAGTTCCTGAGAACAATCTTTTGGGGTTAGACGAAGATGTCCACAATCATTCGGTGGACATGGCAAAGAGTGCTTCAACAGAAGCTAAGGTCCAAGCACTGGATAAAGGTTTACAGACAATAAAAAATGCTGATTTGGAAGAAATACGAGAGCTTGGTTCTGGCACATATGGGACAGTTTATCATGGAAAATGGAAGGGATCAGATGTTGCTATCAAGCGGATCAAAGCGAGCTGTTTTGAAGGAAGGCCATCAGAGCGAGAACGTTTGATAGCAGACTTCTGGAAAGAGGCTTCTATTCTGAGCCAACTGCACCACCCAAATGTTGTGTCATTCTATGGTGTTGTTCAAGATGGACCTAATGATACCCTTGCAACTGTGACTGAATTTATGGTGAATGGATCTCTCAAGCAAGTATTACGCAAGAAGGATAGAACCGTTGACCGGCGCAAAAGATTGATTTTAGCTATGGATGCTGCATTTGGCATGGAATATTTGCATGAAAAGGGTGTAGTCCACTTTGATTTGAAGTGTGAAAATCTTCTTGTTAATATGAGAGATCCACATCGACCAGTTTGTAAGATTGGTGATATGGGCTTGTCAAAGGTAAAACACCAAACTTTGGTCTCTGGGGGTGTACGAGGAACATTGCCATGGATGGCACCAGAGCTTCTTAGTGGGAAAAGCGGCATGGTAACTGATAAAATTGATGTTTATTCATTTGGAATAGTCATGTGGGAACTCCTTACTGGGGATGAGCCTTATGCAGACATGCATTGTGGGTCAATTATAGGTGGCATTATGAATAATACATTACGTCCATCAGTCCCAAGCTGGTGTGACCCTGCTTGGAGATCTTTGATGGAAAGATGCTGGTCGGCTGATCCAGAAGAAAGGCCGCCATTTTCAGAAATTTCAAAGGAGTTAAGAGCAGTGGCTGCATCAATAAATCTAAAATGATGAAGTTGGCTTCTTTATGAGTATATATCCAAGCCTTGACATTATTGTCATTTGACATTTATCTTAGTATGCCTGATAGGCAGAGAGAGTCCAGAATTGATAGAGAACTTTCATGGGATTAAGATTTGCAGATTCCAGGAAATTTACCACAATTTGAAGTAAATGCACAGCCATCCCCCTCAGATAACGTGCGATGTTGGATTCTCTTAGATTCGGGAACCTTTTAAATATATTGAAGACAAGTGTATCTATACTGTAGGTTTCTATACCAGAAATGAAGTGTGAGAGTTTTGCAATAACTCAGCAGAACACTATTATTTAGGCGTGAATCTATTCAGTGGATTTTTTTTGGCAAGGAGTCAAAAATATATGTGGACATGTGTAGGTTGCTGATTGTATCTACGGTACATCTTTCCAAGTATCTGATGCTTGACCGCTCAACAAGCAGTATACCTGAAAGATTGCAAGGAGACACAATCTTGGTTCATGCGCAAGTAACTGTAACATACAAATTTAATGCCTACACAGAGACATCTAACTCCCTTGTTAAATGGCATGTCTTGAAGCAAATGTACTAAATCCTTGTGTTGTTGTCTTTATTAAGGCATCCTATTGTATACCTAGAGAGATGAATTTTCGAAGGCATGTTGGTATGTCTTTAAAAAAATGTACTGGATGCTTGTGTTTTTGTCCCTATTAAGGCATCCTATTGTATATCTTGAGAGGCAAGTATTACAAAAGGCATTTGATTGCTTGTGTATATAAAGGTTTTAAAGTAGTTTGTTAGGTAATACTAATTGCACCAACTGACAAGACGAGTTTTGCATTCTAAACATGCATTAATGTCACATTTAAGAGAGAATTTCCATGGGGCATGCTTAATTTCCTTTTCATATAAACCAGCTGCACCTCAACCCTGGACCTATTAAGCACTGGGAAGGATCAAAGAGAACCTCAAACCTATTAATTTTTAAAAG

Ace file of the UniGene sp_v3.0_unigene954

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9SJP9_RICCO	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Serine/threonine protein kinase, putative	-	-	2.846e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	7.764e-14	-

Source	Gene names
Sma3	At1g16270; At1g79570; At2g35050; At3g46920; At5g49470; At5g57610; CHLREDRAFT_122213; F3O9.7; GSVIVT00002067001; GSVIVT00005634001; GSVIVT00016851001; GSVIVT00020465001; GSVIVT00030137001; GSVIVT00031430001; LOC_Os03g28300; MICPUCDRAFT_5065; MtrDRAFT_AC161

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Glycoside hydrolase, chitinase active site	IPR001579	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Vacuolar protein sorting-associated protein	IPR009543	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3		IPR015706	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G57610.1	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain chr5:23325307-23329099 FORWARD LENGTH=1054	65%
RefSeq	Arabidopsis thaliana	NP_200569.1	octicosapeptide/Phox/Bem1p domain-containing protein kinase [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002331682.1	predicted protein, partial [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7U0

Fln msg: your sequence is longer than subject: 425 - 157

Fln protein: MPITEELLVECNSNGLELPRQDEGVDKTCLNGKMGEDINRTSRNMGLSLYGPNILSSSVNSTYEILDKKDSSGKAKEEVKQVVYKNDHVGTAVPISDLEENVAQQEVPENNLLGLDEDVHNHSVDMAKSASTEAKVQALDKGLQTIKNADLEEIRELGSGTYGTVYHGKWKGSDVAIKRIKASCFEGRPSERERLIADFWKEASILSQLHHPNVVSFYGVVQDGPNDTLATVTEFMVNGSLKQVLRKKDRTVDRRKRLILAMDAAFGMEYLHEKGVVHFDLKCENLLVNMRDPHRPVCKIGDMGLSKVKHQTLVSGGVRGTLPWMAPELLSGKSGMVTDKIDVYSFGIVMWELLTGDEPYADMHCGSIIGGIMNNTLRPSVPSWCDPAWRSLMERCWSADPEERPPFSEISKELRAVAASINLK*

Protein Length: 426

Fln nts: GAACAATGCCATTACTGGAAGTGACAGGGTG_-_ATGCCTATCACAGAAGAGCTGTTAGTGGAGTGCAATTCAAATGGCTTAGAACTACCAAGGCAAGATGAAGGTGTGGATAAAACCTGCTTGAATGGTAAAATGGGTGAGGATATTAACAGGACATCCAGAAACATGGGTTTATCTTTATATGGTCCAAATATTTTGTCTTCATCCGTGAATTCAACATATGAGATATTAGACAAGAAGGATTCTTCTGGAAAAGCAAAAGAAGAGGTAAAACAAGTGGTCTATAAGAATGATCATGTTGGGACTGCAGTTCCTATTTCAGATCTGGAAGAAAATGTAGCGCAGCAAGAAGTTCCTGAGAACAATCTTTTGGGGTTAGACGAAGATGTCCACAATCATTCGGTGGACATGGCAAAGAGTGCTTCAACAGAAGCTAAGGTCCAAGCACTGGATAAAGGTTTACAGACAATAAAAAATGCTGATTTGGAAGAAATACGAGAGCTTGGTTCTGGCACATATGGGACAGTTTATCATGGAAAATGGAAGGGATCAGATGTTGCTATCAAGCGGATCAAAGCGAGCTGTTTTGAAGGAAGGCCATCAGAGCGAGAACGTTTGATAGCAGACTTCTGGAAAGAGGCTTCTATTCTGAGCCAACTGCACCACCCAAATGTTGTGTCATTCTATGGTGTTGTTCAAGATGGACCTAATGATACCCTTGCAACTGTGACTGAATTTATGGTGAATGGATCTCTCAAGCAAGTATTACGCAAGAAGGATAGAACCGTTGACCGGCGCAAAAGATTGATTTTAGCTATGGATGCTGCATTTGGCATGGAATATTTGCATGAAAAGGGTGTAGTCCACTTTGATTTGAAGTGTGAAAATCTTCTTGTTAATATGAGAGATCCACATCGACCAGTTTGTAAGATTGGTGATATGGGCTTGTCAAAGGTAAAACACCAAACTTTGGTCTCTGGGGGTGTACGAGGAACATTGCCATGGATGGCACCAGAGCTTCTTAGTGGGAAAAGCGGCATGGTAACTGATAAAATTGATGTTTATTCATTTGGAATAGTCATGTGGGAACTCCTTACTGGGGATGAGCCTTATGCAGACATGCATTGTGGGTCAATTATAGGTGGCATTATGAATAATACATTACGTCCATCAGTCCCAAGCTGGTGTGACCCTGCTTGGAGATCTTTGATGGAAAGATGCTGGTCGGCTGATCCAGAAGAAAGGCCGCCATTTTCAGAAATTTCAAAGGAGTTAAGAGCAGTGGCTGCATCAATAAATCTAAAATGA___TGAAGTTGGCTTCTTTATGAGTATATATCCAAGCCTTGACATTATTGTCATTTGACATTTATCTTAGTATGCCTGATAGGCAGAGAGAGTCCAGAATTGATAGAGAACTTTCATGGGATTAAGATTTGCAGATTCCAGGAAATTTACCACAATTTGAAGTAAATGCACAGCCATCCCCCTCAGATAACGTGCGATGTTGGATTCTCTTAGATTCGGGAACCTTTTAAATATATTGAAGACAAGTGTATCTATACTGTAGGTTTCTATACCAGAAATGAAGTGTGAGAGTTTTGCAATAACTCAGCAGAACACTATTATTTAGGCGTGAATCTATTCAGTGGATTTTTTTTGGCAAGGAGTCAAAAATATATGTGGACATGTGTAGGTTGCTGATTGTATCTACGGTACATCTTTCCAAGTATCTGATGCTTGACCGCTCAACAAGCAGTATACCTGAAAGATTGCAAGGAGACACAATCTTGGTTCATGCGCAAGTAACTGTAACATACAAATTTAATGCCTACACAGAGACATCTAACTCCCTTGTTAAATGGCATGTCTTGAAGCAAATGTACTAAATCCTTGTGTTGTTGTCTTTATTAAGGCATCCTATTGTATACCTAGAGAGATGAATTTTCGAAGGCATGTTGGTATGTCTTTAAAAAAATGTACTGGATGCTTGTGTTTTTGTCCCTATTAAGGCATCCTATTGTATATCTTGAGAGGCAAGTATTACAAAAGGCATTTGATTGCTTGTGTATATAAAGGTTTTAAAGTAGTTTGTTAGGTAATACTAATTGCACCAACTGACAAGACGAGTTTTGCATTCTAAACATGCATTAATGTCACATTTAAGAGAGAATTTCCATGGGGCATGCTTAATTTCCTTTTCATATAAACCAGCTGCACCTCAACCCTGGACCTATTAAGCACTGGGAAGGATCAAAGAGAACCTCAAACCTATTAATTTTTAAAAG

Fln Alignment:

Contig954___MEYLHEKGVVHFDLKCENLLVNMRDPHRPVCKIGDMGLSKVKHQTLVSGGVRGTLPWMAPELLSGKSGMVTDKIDVYSFGIVMWELLTGDEPYADMHCGSIIGGIMNNTLRPSVPSWCDPAWRSLMERCWSADPEERPPFSEISKELRAVAASINLK
D5A7U0_____________MEYLHEKGVVHFDLKCENLLVNMRDPHRPVCKIGDMGLSKVKHQTLVSGGVRGTLPWMAPELLSGKSGMVTDKVDVYSFGIVMWELLTGDEPYADMHCGSIIGGIMNNTLRPPVPSWSDPAWKSLMERCWSADPEQRPPFSEISKELRAVAASINVK

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
1106	11	88			0.923564
1107	11	88			0.923564
1109			11	88	0.923564
1110	88			11	0.923564
1204	16			83	0.994512
1742	66		33		1.0
1750	88	11			0.923564
1752		88		11	0.923564
1753	88	11			0.923564
1757			12	87	0.992554
1763	85		14		0.993533
1764	85	14			0.993533
1765	75	12		12	0.975346
1767	85		14		0.993533
1768		12		87	0.992554
1769	12			87	0.992554
1770		12	75		0.975346
1772	88			11	0.923564
1773	88			11	0.923564
1776	88			11	0.923564
1778	88			11	0.923564
1787	11			88	0.923564
1788		11	88		0.923564
1789	11		88		0.923564
1826		28		71	1.0
1915	16	83			0.994512
1958		20		80	0.995493
1982	80	20			0.995493
1986		20		80	0.995493
1988		20	80		0.995493
1989	20			80	0.995493
2042		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain