SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene947

Length: 3540 nt

UniGene Fasta

>sp_v3.0_unigene947
TACGGCCGGCCAAGGGCTTCAGTCATTTTAAACCCGGAGAAACAGGTTATATATTTATCAGATCCAGGACCAGGGTTTGGATTTCGGCACTTAAAGCAGGATTTTTAGGGCTTCCTGCGGTTTTTTAATGTTTCGCGCAGCTCCTGGGTTACAGCCGGTGTAAAAACGAAATCCGTGTGATAAAAGGGGGAAATCTTAGGTTGCAGCGTGCAGGGTGAGGGTTCGAGTCCCGTAAAAGAGCCTGCCATTGGAGATTGGTTGAGGTTGATTCTTGGCAATTTGAAGTGAGACTTTTTAAGTACGATTCTCAATCCTCGGCCTTGGCTCCTATTCTTTAGTTGTACAGAACTGTATGCTTATGCGATTAATACACTGAATGGCCTCTGCCCTTATAGTAACTCGTGAGCGGCACCAACCTCAGAACAGCCTGAACAGGAATTCCATCATGAAGAAATCTAAAAAGGTATCAGCTAGAACCTCATACAATATGCTTCCTGATTACCCTTATGCGGTGGAGGTTACAGGGGATTCAGATGGAAGGAGGCAGAAGGTTCAATATGTTAAATCTGAAAGCATTGGAGCTTCCGGCAGGTTTGATTCTGAGACTGCCTCGGAGGATTCCTGTTCTCTGAAGAGAAAGTCCATAAATCTGAATTATGCAGGCCAGAAAATGGATGCTCTTGGAGTTCCCACTTATGTTATTGCAGTTTCACAGATGTCTAGGGGTGAAAAGATGGAGCTGAGAAAAAAACGTAAGTTGGAACTGGACCAGGTGAGATCCGTTGCACACAGAATTGAAGAATTACAGCTTACATCGTCTGGTAGTGTTCCAACTGTTAGCGATGGACATATTTCAAGGTTGGCGAATAGTTGCCCAGGTGGCATTCCTGGGAAATCAGTCATTGGGCCGGGCGCAGTTCATGCTTCAGTATTATGTCAAAAAGATAGTGGTTTCTGCAGACAATCATCATTTGCGAGTGATGGAAGTAAGGGTGGCTTACGTTCTCTTGGTAAAGAAAAGCGAACTCCTAAAGCGAATCAACTCTACCTCAATTCTGAGTATGTTTCTGGTAATGATAAGATGGCACAGAAGTCTAAAGTTGGTACTATAGGTGTAAAGCGCGGCCTTCTTGGAAGATTTGAATCTAAAGACGTGAAGAGGCAGAAAATGGATCCTGTCCAAAGAAAAACAGTTGCTGAGTACATGAACCAGTGTGCTGATACTCTGAAGAAGCTTAGGACCCATAAATTTGCCTGGGTTTTCAATGAGCCTGTTGATCCAGTTAAATTAAGCATCCCTGACTATTTTCAGATTATCACTCGACCCATGGATTTGGGCACTATACAAACTAAGTTGGACAAGGATCTCTATAATACCCCAATGGAATTTGCTGAAGATGTAAGATTGACTTTTGCAAATGCAATGAAATATAATCCTCCTGGCAATGATGTTCATTATATGGCAGTTAATATGAGTCAATTCTTTGAGGGCAAATGGAAAATTATTGAGCAGAAGCTGGCTGGAGAAGAAGTTTATAGAAAATTAACTCAGGATGTTCAGCTTATTCCAACCAAGAAGCAACAGTGTAGTAACAAAATTACAGAAACAAGAAATAAACCAAAGGTGCAACCTCCAAATTCTGCTCCTCTCTCAGATATACCAAGTCAGCAGAAACCGAAGGTTGAAAAATGCAAGCGCCCGATGTCATTTGATGAAAAGAAGAAGCTTAGTCAGGATCTTGAACAGCTACCAGATGAAATGCCGGTACCCATAATTACATTCTTAAAGAAGCACACTGGTGGTCTAAGTCAGAACGAGGAGGAAATAGAAGTTGATATTGATTCTTTTGATGATGATTCTTTATGGGAGCTACAGAACCTTGTTTCCAATTGCCTCAAAGAGATAGGCCAAGGCACCAGAAATGCCCAGGCTCCAGCAGCGCTTCCTAATCCTGAGCCTGTGAATGCTAGGGTTGGATCACAATTGGAGAGTCAGCCCACAAAAGTAGTCCAACAAGGTGGTGACCTTGGTGATGAATATGTTGATGTTGGTGGGGATGAGATGCCCGCAACGAACTTCCCTAGTGTTGATATTGAGAAAGATACTGCAGCAGTGAGCATCAAATGTAGTAGCTCAAGTAGCTCAAGCAGTGATTCTGGATCTTCCTCTAGTGATTCTGATTCCGGAAGTTCCTCAGGCAGTGAGTCAGATGCAGATGAAGCACATTCTACCGATGCACCACTTAAGGAATCTGTGGAGTCAGGTGCTGACTGTGAGGAGCGGGGTAACTCTGACCCTGAGACTACTGGTGCGAAAAGGGCTGTAAGTGTTTTGGATGAAGAGAATGCTCAGCCAAAGGCTACGGTTTCTGAGACAGACACCCACCAAGAAGGGGAGAGTGCTCCACCTGAGAGGCAGGTCTCCCCAGACAAGCAAATTCGGGCTGCCTTGTTGAGAAGCCGTTTTGCTGAAACAATTTTGAAAGCCCAAGAAAAGACATTAAATCAGGGTAATAAAGGAGATCCAGAAAAATTACGGCGTGAAAGGGAACAATTGGAAAAGTGGCAACGAGAAGAAAAAGCAAGAATTCAAGCTGAAGCAAAGGCTGCAGAAGCGGTTCGTATGAAAGCTGAAGCAGAAGCCGCAGCTGAAGCAAAACGAAAGAGGGAGATGGAACGGGAAGCTGCTCGTTTGGAATTGCAAAATATGGAGAGGACTGTGGAAATCGACGAGAACAATCATCATATTCTTGAGGTTCTCGAGAGGCTGAGATATCCTCCTGCTGAACACACGCCAAGCTCGGGTGATGAGACTAGCCCTGTTCAATCTGAGGATGCAATGAAAGCCTTTCAATTACAGGGTGAAAATCCTTTGGAGCTACTTGGATTGACTTTGAAGAAATTGGACGATGAGGACGAAGAAACCACTGCAGATTGTGCTGCTGGTAATGGAGACGTGGAGGAAGGGGAGATTGATTAAGTCGTGAAATTGTACATTTTATTTTATTGCTTTATTCTTTTCAGGAGTTGAGAAGTGATTTGAAGCACAAATCCTCAACTTGAGGTGATAAACCTCCTCATCTATAGACACGATGTAAATTAGTTCTGTCCCATTTGTCTCCTTCATGTAATCCAATAGGATGCAAAAGAAGTTAGAAAAGAAATTGCTTGGGCATCCTCGTTTTGGTTAAGAGGTGAGATCGATATAAGTTGGTTCAAATGCTAAAACGGTCAGTTGAGAGATTAAGAAAATTTCCTAAGGCGGACTGGATTCCCTCTTTTGTTAGTTTTGTAAAGGAAAAAAGACACAAAATGCAGCCCACTTTCTGGGTACCCACAGGCATGGCCATTCACATGAATTTTCTATATACTTGCAGAAAATGAGAATGGAAAAAAGACATGTTGTGGGGAGAGTGGCAGAGACTTTATACATCAAAGAGTATTTTCAAATCATTTTGATGTTAACCTTTTTTGTTTAGACCTATGTATTATACGTGGATTGTCTTTTTTGGCTATACATCATCCAAGTACGTTTCAAAC

Ace file of the UniGene sp_v3.0_unigene947

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Bromodomain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RAK3_RICCO	-	-	0.0	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Sma3	Bromodomain-containing protein, putative	-	-	2.661e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histone acetyltransferase.	EC:2.3.1.48	-	2.177e-09	-

Source	Gene names
Sma3	At5g14270; At5g63320; F18O22_60; GSVIVT00005742001; GSVIVT00007222001; GSVIVT00017896001; GSVIVT00020563001; GTE901; GTE903; GTE913; OJ1163_G04.101; OJ1669_F01.4-1; OJ1791_B03.42-1; Os02g0601800; Os07g0507700; OsI_00884; OsI_07959; OsI_26141; OsJ_07416; O

Source	GOs	Term	Type	e value	Identity
Sma3	kinase activity	GO:0016301	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, TAZ-type	IPR000197	-	-
Sma3	Zinc finger, ZZ-type	IPR000433	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3		IPR009255	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABJ0

Fln msg: your sequence is longer than subject: 868 - 377

Fln protein: MASALIVTRERHQPQNSLNRNSIMKKSKKVSARTSYNMLPDYPYAVEVTGDSDGRRQKVQYVKSESIGASGRFDSETASEDSCSLKRKSINLNYAGQKMDALGVPTYVIAVSQMSRGEKMELRKKRKLELDQVRSVAHRIEELQLTSSGSVPTVSDGHISRLANSCPGGIPGKSVIGPGAVHASVLCQKDSGFCRQSSFASDGSKGGLRSLGKEKRTPKANQLYLNSEYVSGNDKMAQKSKVGTIGVKRGLLGRFESKDVKRQKMDPVQRKTVAEYMNQCADTLKKLRTHKFAWVFNEPVDPVKLSIPDYFQIITRPMDLGTIQTKLDKDLYNTPMEFAEDVRLTFANAMKYNPPGNDVHYMAVNMSQFFEGKWKIIEQKLAGEEVYRKLTQDVQLIPTKKQQCSNKITETRNKPKVQPPNSAPLSDIPSQQKPKVEKCKRPMSFDEKKKLSQDLEQLPDEMPVPIITFLKKHTGGLSQNEEEIEVDIDSFDDDSLWELQNLVSNCLKEIGQGTRNAQAPAALPNPEPVNARVGSQLESQPTKVVQQGGDLGDEYVDVGGDEMPATNFPSVDIEKDTAAVSIKCSSSSSSSSDSGSSSSDSDSGSSSGSESDADEAHSTDAPLKESVESGADCEERGNSDPETTGAKRAVSVLDEENAQPKATVSETDTHQEGESAPPERQVSPDKQIRAALLRSRFAETILKAQEKTLNQGNKGDPEKLRREREQLEKWQREEKARIQAEAKAAEAVRMKAEAEAAAEAKRKREMEREAARLELQNMERTVEIDENNHHILEVLERLRYPPAEHTPSSGDETSPVQSEDAMKAFQLQGENPLELLGLTLKKLDDEDEETTADCAAGNGDVEEGEID*

Protein Length: 869

Fln nts: TACGGCCGGCCAAGGGCTTCAGTCATTTTAAACCCGGAGAAACAGGTTATATATTTATCAGATCCAGGACCAGGGTTTGGATTTCGGCACTTAAAGCAGGATTTTTAGGGCTTCCTGCGGTTTTTTAATGTTTCGCGCAGCTCCTGGGTTACAGCCGGTGTAAAAACGAAATCCGTGTGATAAAAGGGGGAAATCTTAGGTTGCAGCGTGCAGGGTGAGGGTTCGAGTCCCGTAAAAGAGCCTGCCATTGGAGATTGGTTGAGGTTGATTCTTGGCAATTTGAAGTGAGACTTTTTAAGTACGATTCTCAATCCTCGGCCTTGGCTCCTATTCTTTAGTTGTACAGAACTGTATGCTTATGCGATTAATACACTGA_-_ATGGCCTCTGCCCTTATAGTAACTCGTGAGCGGCACCAACCTCAGAACAGCCTGAACAGGAATTCCATCATGAAGAAATCTAAAAAGGTATCAGCTAGAACCTCATACAATATGCTTCCTGATTACCCTTATGCGGTGGAGGTTACAGGGGATTCAGATGGAAGGAGGCAGAAGGTTCAATATGTTAAATCTGAAAGCATTGGAGCTTCCGGCAGGTTTGATTCTGAGACTGCCTCGGAGGATTCCTGTTCTCTGAAGAGAAAGTCCATAAATCTGAATTATGCAGGCCAGAAAATGGATGCTCTTGGAGTTCCCACTTATGTTATTGCAGTTTCACAGATGTCTAGGGGTGAAAAGATGGAGCTGAGAAAAAAACGTAAGTTGGAACTGGACCAGGTGAGATCCGTTGCACACAGAATTGAAGAATTACAGCTTACATCGTCTGGTAGTGTTCCAACTGTTAGCGATGGACATATTTCAAGGTTGGCGAATAGTTGCCCAGGTGGCATTCCTGGGAAATCAGTCATTGGGCCGGGCGCAGTTCATGCTTCAGTATTATGTCAAAAAGATAGTGGTTTCTGCAGACAATCATCATTTGCGAGTGATGGAAGTAAGGGTGGCTTACGTTCTCTTGGTAAAGAAAAGCGAACTCCTAAAGCGAATCAACTCTACCTCAATTCTGAGTATGTTTCTGGTAATGATAAGATGGCACAGAAGTCTAAAGTTGGTACTATAGGTGTAAAGCGCGGCCTTCTTGGAAGATTTGAATCTAAAGACGTGAAGAGGCAGAAAATGGATCCTGTCCAAAGAAAAACAGTTGCTGAGTACATGAACCAGTGTGCTGATACTCTGAAGAAGCTTAGGACCCATAAATTTGCCTGGGTTTTCAATGAGCCTGTTGATCCAGTTAAATTAAGCATCCCTGACTATTTTCAGATTATCACTCGACCCATGGATTTGGGCACTATACAAACTAAGTTGGACAAGGATCTCTATAATACCCCAATGGAATTTGCTGAAGATGTAAGATTGACTTTTGCAAATGCAATGAAATATAATCCTCCTGGCAATGATGTTCATTATATGGCAGTTAATATGAGTCAATTCTTTGAGGGCAAATGGAAAATTATTGAGCAGAAGCTGGCTGGAGAAGAAGTTTATAGAAAATTAACTCAGGATGTTCAGCTTATTCCAACCAAGAAGCAACAGTGTAGTAACAAAATTACAGAAACAAGAAATAAACCAAAGGTGCAACCTCCAAATTCTGCTCCTCTCTCAGATATACCAAGTCAGCAGAAACCGAAGGTTGAAAAATGCAAGCGCCCGATGTCATTTGATGAAAAGAAGAAGCTTAGTCAGGATCTTGAACAGCTACCAGATGAAATGCCGGTACCCATAATTACATTCTTAAAGAAGCACACTGGTGGTCTAAGTCAGAACGAGGAGGAAATAGAAGTTGATATTGATTCTTTTGATGATGATTCTTTATGGGAGCTACAGAACCTTGTTTCCAATTGCCTCAAAGAGATAGGCCAAGGCACCAGAAATGCCCAGGCTCCAGCAGCGCTTCCTAATCCTGAGCCTGTGAATGCTAGGGTTGGATCACAATTGGAGAGTCAGCCCACAAAAGTAGTCCAACAAGGTGGTGACCTTGGTGATGAATATGTTGATGTTGGTGGGGATGAGATGCCCGCAACGAACTTCCCTAGTGTTGATATTGAGAAAGATACTGCAGCAGTGAGCATCAAATGTAGTAGCTCAAGTAGCTCAAGCAGTGATTCTGGATCTTCCTCTAGTGATTCTGATTCCGGAAGTTCCTCAGGCAGTGAGTCAGATGCAGATGAAGCACATTCTACCGATGCACCACTTAAGGAATCTGTGGAGTCAGGTGCTGACTGTGAGGAGCGGGGTAACTCTGACCCTGAGACTACTGGTGCGAAAAGGGCTGTAAGTGTTTTGGATGAAGAGAATGCTCAGCCAAAGGCTACGGTTTCTGAGACAGACACCCACCAAGAAGGGGAGAGTGCTCCACCTGAGAGGCAGGTCTCCCCAGACAAGCAAATTCGGGCTGCCTTGTTGAGAAGCCGTTTTGCTGAAACAATTTTGAAAGCCCAAGAAAAGACATTAAATCAGGGTAATAAAGGAGATCCAGAAAAATTACGGCGTGAAAGGGAACAATTGGAAAAGTGGCAACGAGAAGAAAAAGCAAGAATTCAAGCTGAAGCAAAGGCTGCAGAAGCGGTTCGTATGAAAGCTGAAGCAGAAGCCGCAGCTGAAGCAAAACGAAAGAGGGAGATGGAACGGGAAGCTGCTCGTTTGGAATTGCAAAATATGGAGAGGACTGTGGAAATCGACGAGAACAATCATCATATTCTTGAGGTTCTCGAGAGGCTGAGATATCCTCCTGCTGAACACACGCCAAGCTCGGGTGATGAGACTAGCCCTGTTCAATCTGAGGATGCAATGAAAGCCTTTCAATTACAGGGTGAAAATCCTTTGGAGCTACTTGGATTGACTTTGAAGAAATTGGACGATGAGGACGAAGAAACCACTGCAGATTGTGCTGCTGGTAATGGAGACGTGGAGGAAGGGGAGATTGATTAA___GTCGTGAAATTGTACATTTTATTTTATTGCTTTATTCTTTTCAGGAGTTGAGAAGTGATTTGAAGCACAAATCCTCAACTTGAGGTGATAAACCTCCTCATCTATAGACACGATGTAAATTAGTTCTGTCCCATTTGTCTCCTTCATGTAATCCAATAGGATGCAAAAGAAGTTAGAAAAGAAATTGCTTGGGCATCCTCGTTTTGGTTAAGAGGTGAGATCGATATAAGTTGGTTCAAATGCTAAAACGGTCAGTTGAGAGATTAAGAAAATTTCCTAAGGCGGACTGGATTCCCTCTTTTGTTAGTTTTGTAAAGGAAAAAAGACACAAAATGCAGCCCACTTTCTGGGTACCCACAGGCATGGCCATTCACATGAATTTTCTATATACTTGCAGAAAATGAGAATGGAAAAAAGACATGTTGTGGGGAGAGTGGCAGAGACTTTATACATCAAAGAGTATTTTCAAATCATTTTGATGTTAACCTTTTTTGTTTAGACCTATGTATTATACGTGGATTGTCTTTTTTGGCTATACATCATCCAAGTACGTTTCAAAC

Fln Alignment:

Contig947___YVSGNDKMAQKSKVGTI--GVKRGLLGRFESKDVKRQKMDPVQRKTVAEYMNQCADTLKKLRTHKFAWVFNEPVDPVKLSIPDYFQIITRPMDLGTIQTKLD-KDL--YNTPMEFAEDVRLTFANAMKYNPPGNDVHYMAVNMSQFFEGKWKIIEQKLAGEEVYRKLTQDVQLIPTKKQQCSNKITETRNKPKVQPPNSAPLSDIPSQQKPKVEKCKRPMSFDEKKKLSQDLEQLPDEMPVPIITFLKKHTGGLSQNEEEIEVDIDSFDDDSLWELQNLVSNCL
D5ABJ0_____________HISSSKDKIQHSKSGLVLRDREREKINLNHRKQQEASRREAGCSKRMAELMRQFSTILRQITQHRWAWPFMTPVDVKGLGLHDYHDVIKKPMDFGTIRRKMDAKDATGYKNVCDICEDVRLVFKNAVTYNDDQSDVHVMAKTLSQKFEEKWKTLWPKVNEEEARRK---KEEADANSREMVDSRLSGETDLEKLGGELDELNEHLEKLRQELAPKC-RMMSVEEKRQLGESLGKLSPEDLTKALQIIAQKNPSFIPTEDEVELDIDAQDASTLWRLQYFVKAVL

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
788		75	25		0.996473
789	75		25		0.996473
790		75	25		0.996473
913		50		50	1.0
996	14		85		0.993533
1011	11		88		0.923564
1013	88		11		0.923564
1014	88		11		0.923564
1015	88		11		0.923564
1022		88		11	0.923564
1377	33	66			0.997452
1690	66			33	0.997452
1691	33			66	0.997452
2038	66		33		0.997452
2039	66		33		0.997452
2229	16			83	0.994512
2383		85		14	0.993533
2480	25			75	0.996473
2529		12	87		0.992554
2531	87			12	0.992554
2532	87			12	0.992554
2746		83	16		0.994512
2747	83		16		0.994512
2748			16	83	0.994512
3103			14	85	0.993533
3262	50			50	1.0
3336		84		15	0.999986
3436		87	12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain