SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene926

Length: 3533 nt

UniGene Fasta

>sp_v3.0_unigene926
CTGAATCACGGCCTCATTAGCCTGTTTTGAGTTATTCAAAATGAGCAGCTTTGGGATAATTTTTACATGCTGTTTGGCATCCATGCTATGCCTGGTTTCAGCAGCGGTTTCGGACAATTACTTGATTAATTGTGGGGGGAATTCCAGCACTACACTGAATGGGAGAAAGTTTGTTGGGGATTCGTCCGCGAACAATGTCACATTTTCCCCCGTTGGGATTTCTGCTGTGACAGCGAGCGTGAGCTCGAGTGCTCCATTTGCTGATCTCTATCGCACTGCTCGCATCTTCACCACCACGGCTAATTACAGCTTCAAGGTTAGCAGCCCAGGGCGTCACTGGGTTCGTCTTCATTTCTATCCTTTTACATTTGAGAATTACAGTGTTAATTCGTCTTTGTTCTCTGTAAATGTTGGAAGTCTACAATTGTTATCCAATCTGAACGTGTCTGATGAAATAGCGGATCGGAATGCCAATATACAATCCTCTGCAAGTGAGAGACCTACTGTCACCTATATAATGAAAGAGTACCTCATCGATGCTAGTTCCAGCGCCCTTGTTTTAACGTTCGTCCCTGGTTCTGGTTCCTTTGCTTTCATCAATGCAATGGAGGTGGTGTCTATGCCTAAAGGGCTGTTCAAAAACTCTGTTAATCTAATGGGATCTTCTTCCAAAAATACCTCACTTGAGATTGACTCTTATTCTGTGGAAACAATGTATAGGCTAAATGTTGGAGGGGACTCCATTGAGCCCGAGAATGATTCTGGGGGGTTGTCAAGAGCCTGGGAGGAAGATTTATACTATATGTATTCAGCTGCTGCAGCAACTGTAATCAATGGTACCTCTAATGTTAGTTATGCGTCCCCAAATGAGTCATATATAGCTCCTCTTGAAGTTTATGAATCAGCCAGAGTGATGACGGATAATCAAGTCATTGACAAAAAATTCAATATATCTTGGGTGTTTCCAGTGGATTCCGGCTTTTCGTACCTCATTCGCATGCATTTCTGTGAGCTTCAGTATTCTGAAGCCGCTGCAAGAGTTTTTAGGATCTTTATCAATAACCAGACTGCAGCAGATGCTTTTGATGTGTATGCTCTTGCAGGTGGAAAGGACAAGGCTATACACAGAGATTATATAAACCCTCTGGGGGAGGGGATAAATACCATGTGGATCCAGCTTGGCCCAGACCCAAGCACTACATCAAATACCGATGCAATCCTCAATGGACTGGAGATTTTTAAGCTGAGCAATAAAAACAATTTGGCTGGAAGTACTAGAAGGATTGAGGCTGGAAGCCCCTCTGTAGAAACAGGAAAATCCAAGATTCTCTGGCCTGCCATAGGAGCGGGAGCAGGAGGGATTGTTATTATAGTTGCAGTTGTTGTGGGTTTGTGCTTGTTCTGCCGCAAGAAGAAGTCAATGTCTGTGAAGCCTCATTCCCCAGGATGGCTTCCTTTATTCTTGCATGCTGGATCAGAGAGTACATACACTACCAAAGCTTCAAAGGGCAGCGTGAATAGTGTTAGTGTAAGCGCTCCTGCAAGAAGAGGCAGAAGATTCACCTTTACGGAAATCAAACTTGCAACTAACAGCTTTGATGAGTCGAGGGTGATTGGGGTTGGAGGTTTTGGGAAGGTCTACAAAGGTGAACTTGAAGATGGTGTTGTCGTTGCAATAAAAAGAGCAAATCCACAATCGGAGCAAGGTCTGACTGAATTTGAGACAGAGATAGAACTACTTTCCAAGCTAAGGCATCGCCATCTGGTGTCTCTGATAGGTTATTGTGAGGATCAAAATGAGATGATCCTGGTCTATGAATATATGGCCAATGGTACCTTGAGAAGCCATTTGTTTGGAAGCGATTTGCCATCCTTGCCCTGGAAACAAAGATTGGAGATTTGTATTGGTGCTGCTAGGGGATTGCATTATCTGCACACAGGAGCAGAAAGAGGAATCATTCATAGAGATGTGAAGACTACAAACATTCTCCTTGATGAGAATTTTGTAGCAAAAATGGCTGATTTTGGTCTGTCCAAGACGGGTCCTGCTTTGGACCACACTCATGTGAGTACAGCTGTGAAGGGTAGTTTTGGGTACCTTGATCCAGAATATTTCCGAAGGCAGCAGCTTACAGAGAAATCTGATGTCTATTCCTTTGGAGTGGTTTTGTTTGAAGTGATCTGTGCAAGGCCTGTTATCAATCCTACTCTTCCCAGAGAGCAAATAAATCTTGCAGAATGGGCTATGCATTGGCAGCAGAGGGGAATGCTGGAACAAATCATTGACCCCCATCTTGCAGGATCTTATAGTCCAGGTTCTCTGAAAAAATTTGGAGAGATTGCTGAGAAATGCTTAGCTGATGATGGAAGGAACAGGCCTACAATTGGAGATGTGCTGTGGAATCTGGAATATGTTTTGCAGTTGCAAGAGGCAACTGTTCGGAGTGTCTCACTCAATAATAGCTCGACCCAATTGGGCAACACTGCCTTGAATCTTCCAAGAATCGGAGAATCAGATGAACACGATGAGAGTACACTTATACAAGATCAAGATCAGCAGATTGATGAGCGTATTTTTATACAGGATCAAGATCCACAGATTGATGAGAGGAGTGTTGGAGAGTCAGAAGAAGCTGCAGGTATTGTGGTCTTTTCGCAGCTTGTGAAACCTCAGGGAAGGTGAATGGTGGACAAATAAGTCTCAAGAATCTTCCTAAATTTATGTTTCCTGTTGCAGTCTTGGTCAGTGCCCCTTAAAAGTTGGAGACAAGCATATCCTCTGAAATATATCCTTCTCTATTGTTATCTGCATTGTTACCTAGCAAATTATTATGGACCAATATATAACCTCTTGGACGAGCATTACCTTCCAGCTTCTGCTGAGCGCTGTTTCATGTCAAATCTGGTCTTTTAATACAGCTTTATGCTGAGTGAGAGGAGACTGAGTGCTATTGCATGACAAAATCCGGTCTTTCAATCCAGCATTATTTGCTGAGTGATAGGAGGCCATTATGGAGAACACGTTTCAGAAACAACGAAAGTTTATTTATCACTAAGGTTTTCAACTCTCTCAATCACTGTAGAGGTGTTTTGATGTTTTGGGGTAATGAAAGTTGTAACTCTAATATGCTTATTCAAGCTTCGTATTGAAGCTGGAAAAGGACCCATTTTGTAGCAGCTATTTTTTTGAAGTAGCACCATCCAGTTGGTTTTGTTTGTGACTATTACAAAGATTTGCATTTTCATTTATTTTGTAGACAGCACATTCATTCCAGTTATCTCGGTACATAAAACTGCTCTCTCAAGAGTTTATGGTGTAAGCAGCAGTCAAGGCAATCTATGTTTGCCATTCTGAATATAAATGCTGATAAAATTAGTATTTTGCTTCATCTTCTTGTTTCTGGGTGAGGGGAGCTGCAATTTTATGCAACCATGTACCGAGGCAGGCAAGTGATTCTTGTTGTTGCTGCTGTTATTTGACTTGCTTTAAGTAGAAAAATTCAGTCTTGGTTGTGAGAGTGACCATTATGAAT

Ace file of the UniGene sp_v3.0_unigene926

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	hercules receptor kinase 2 [Arabidopsis thaliana] sp\|Q9SA72.1\|Y1357_ARATH RecName: Full=Probable receptor-like protein kinase At1g30570; Flags: Precursor gb\|AAD25744.1\|AC007060_2 Contains eukaryotic protein kinase domain PF\|00069 [Arabidopsis thaliana] gb	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Sma3	FERONIA receptor-like kinase	-	-	5.817e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	7.241e-13	-

Source	Gene names
Sma3	AT4g39110; At1g30570; At2g21480; At2g39360; At3g04690; At3g46290; At3g51550; At4g39110; At5g24010; At5g28680; At5g54380; At5g59700; At5g61350; B1143G03.32; F12M12.260; F18L15.10; F19H22.210; F26O13.190; F7O18.16; FER; Fen; GSVIVT00006178001; GSVIVT0001629

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Isopenicillin N synthase, conserved site	IPR002057	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Peptidase S16, lon N-terminal	IPR003111	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G30570.1	HERK2 hercules receptor kinase 2 chr1:10828933-10831482 FORWARD LENGTH=849	55%
RefSeq	Arabidopsis thaliana	NP_174345.1	hercules receptor kinase 2 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002330599.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKY1

Fln msg: your sequence is longer than subject: 881 - 431

Fln protein: MSSFGIIFTCCLASMLCLVSAAVSDNYLINCGGNSSTTLNGRKFVGDSSANNVTFSPVGISAVTASVSSSAPFADLYRTARIFTTTANYSFKVSSPGRHWVRLHFYPFTFENYSVNSSLFSVNVGSLQLLSNLNVSDEIADRNANIQSSASERPTVTYIMKEYLIDASSSALVLTFVPGSGSFAFINAMEVVSMPKGLFKNSVNLMGSSSKNTSLEIDSYSVETMYRLNVGGDSIEPENDSGGLSRAWEEDLYYMYSAAAATVINGTSNVSYASPNESYIAPLEVYESARVMTDNQVIDKKFNISWVFPVDSGFSYLIRMHFCELQYSEAAARVFRIFINNQTAADAFDVYALAGGKDKAIHRDYINPLGEGINTMWIQLGPDPSTTSNTDAILNGLEIFKLSNKNNLAGSTRRIEAGSPSVETGKSKILWPAIGAGAGGIVIIVAVVVGLCLFCRKKKSMSVKPHSPGWLPLFLHAGSESTYTTKASKGSVNSVSVSAPARRGRRFTFTEIKLATNSFDESRVIGVGGFGKVYKGELEDGVVVAIKRANPQSEQGLTEFETEIELLSKLRHRHLVSLIGYCEDQNEMILVYEYMANGTLRSHLFGSDLPSLPWKQRLEICIGAARGLHYLHTGAERGIIHRDVKTTNILLDENFVAKMADFGLSKTGPALDHTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVICARPVINPTLPREQINLAEWAMHWQQRGMLEQIIDPHLAGSYSPGSLKKFGEIAEKCLADDGRNRPTIGDVLWNLEYVLQLQEATVRSVSLNNSSTQLGNTALNLPRIGESDEHDESTLIQDQDQQIDERIFIQDQDPQIDERSVGESEEAAGIVVFSQLVKPQGR*

Protein Length: 882

Fln nts: CTGAATCACGGCCTCATTAGCCTGTTTTGAGTTATTCAAA_-_ATGAGCAGCTTTGGGATAATTTTTACATGCTGTTTGGCATCCATGCTATGCCTGGTTTCAGCAGCGGTTTCGGACAATTACTTGATTAATTGTGGGGGGAATTCCAGCACTACACTGAATGGGAGAAAGTTTGTTGGGGATTCGTCCGCGAACAATGTCACATTTTCCCCCGTTGGGATTTCTGCTGTGACAGCGAGCGTGAGCTCGAGTGCTCCATTTGCTGATCTCTATCGCACTGCTCGCATCTTCACCACCACGGCTAATTACAGCTTCAAGGTTAGCAGCCCAGGGCGTCACTGGGTTCGTCTTCATTTCTATCCTTTTACATTTGAGAATTACAGTGTTAATTCGTCTTTGTTCTCTGTAAATGTTGGAAGTCTACAATTGTTATCCAATCTGAACGTGTCTGATGAAATAGCGGATCGGAATGCCAATATACAATCCTCTGCAAGTGAGAGACCTACTGTCACCTATATAATGAAAGAGTACCTCATCGATGCTAGTTCCAGCGCCCTTGTTTTAACGTTCGTCCCTGGTTCTGGTTCCTTTGCTTTCATCAATGCAATGGAGGTGGTGTCTATGCCTAAAGGGCTGTTCAAAAACTCTGTTAATCTAATGGGATCTTCTTCCAAAAATACCTCACTTGAGATTGACTCTTATTCTGTGGAAACAATGTATAGGCTAAATGTTGGAGGGGACTCCATTGAGCCCGAGAATGATTCTGGGGGGTTGTCAAGAGCCTGGGAGGAAGATTTATACTATATGTATTCAGCTGCTGCAGCAACTGTAATCAATGGTACCTCTAATGTTAGTTATGCGTCCCCAAATGAGTCATATATAGCTCCTCTTGAAGTTTATGAATCAGCCAGAGTGATGACGGATAATCAAGTCATTGACAAAAAATTCAATATATCTTGGGTGTTTCCAGTGGATTCCGGCTTTTCGTACCTCATTCGCATGCATTTCTGTGAGCTTCAGTATTCTGAAGCCGCTGCAAGAGTTTTTAGGATCTTTATCAATAACCAGACTGCAGCAGATGCTTTTGATGTGTATGCTCTTGCAGGTGGAAAGGACAAGGCTATACACAGAGATTATATAAACCCTCTGGGGGAGGGGATAAATACCATGTGGATCCAGCTTGGCCCAGACCCAAGCACTACATCAAATACCGATGCAATCCTCAATGGACTGGAGATTTTTAAGCTGAGCAATAAAAACAATTTGGCTGGAAGTACTAGAAGGATTGAGGCTGGAAGCCCCTCTGTAGAAACAGGAAAATCCAAGATTCTCTGGCCTGCCATAGGAGCGGGAGCAGGAGGGATTGTTATTATAGTTGCAGTTGTTGTGGGTTTGTGCTTGTTCTGCCGCAAGAAGAAGTCAATGTCTGTGAAGCCTCATTCCCCAGGATGGCTTCCTTTATTCTTGCATGCTGGATCAGAGAGTACATACACTACCAAAGCTTCAAAGGGCAGCGTGAATAGTGTTAGTGTAAGCGCTCCTGCAAGAAGAGGCAGAAGATTCACCTTTACGGAAATCAAACTTGCAACTAACAGCTTTGATGAGTCGAGGGTGATTGGGGTTGGAGGTTTTGGGAAGGTCTACAAAGGTGAACTTGAAGATGGTGTTGTCGTTGCAATAAAAAGAGCAAATCCACAATCGGAGCAAGGTCTGACTGAATTTGAGACAGAGATAGAACTACTTTCCAAGCTAAGGCATCGCCATCTGGTGTCTCTGATAGGTTATTGTGAGGATCAAAATGAGATGATCCTGGTCTATGAATATATGGCCAATGGTACCTTGAGAAGCCATTTGTTTGGAAGCGATTTGCCATCCTTGCCCTGGAAACAAAGATTGGAGATTTGTATTGGTGCTGCTAGGGGATTGCATTATCTGCACACAGGAGCAGAAAGAGGAATCATTCATAGAGATGTGAAGACTACAAACATTCTCCTTGATGAGAATTTTGTAGCAAAAATGGCTGATTTTGGTCTGTCCAAGACGGGTCCTGCTTTGGACCACACTCATGTGAGTACAGCTGTGAAGGGTAGTTTTGGGTACCTTGATCCAGAATATTTCCGAAGGCAGCAGCTTACAGAGAAATCTGATGTCTATTCCTTTGGAGTGGTTTTGTTTGAAGTGATCTGTGCAAGGCCTGTTATCAATCCTACTCTTCCCAGAGAGCAAATAAATCTTGCAGAATGGGCTATGCATTGGCAGCAGAGGGGAATGCTGGAACAAATCATTGACCCCCATCTTGCAGGATCTTATAGTCCAGGTTCTCTGAAAAAATTTGGAGAGATTGCTGAGAAATGCTTAGCTGATGATGGAAGGAACAGGCCTACAATTGGAGATGTGCTGTGGAATCTGGAATATGTTTTGCAGTTGCAAGAGGCAACTGTTCGGAGTGTCTCACTCAATAATAGCTCGACCCAATTGGGCAACACTGCCTTGAATCTTCCAAGAATCGGAGAATCAGATGAACACGATGAGAGTACACTTATACAAGATCAAGATCAGCAGATTGATGAGCGTATTTTTATACAGGATCAAGATCCACAGATTGATGAGAGGAGTGTTGGAGAGTCAGAAGAAGCTGCAGGTATTGTGGTCTTTTCGCAGCTTGTGAAACCTCAGGGAAGGTGA___ATGGTGGACAAATAAGTCTCAAGAATCTTCCTAAATTTATGTTTCCTGTTGCAGTCTTGGTCAGTGCCCCTTAAAAGTTGGAGACAAGCATATCCTCTGAAATATATCCTTCTCTATTGTTATCTGCATTGTTACCTAGCAAATTATTATGGACCAATATATAACCTCTTGGACGAGCATTACCTTCCAGCTTCTGCTGAGCGCTGTTTCATGTCAAATCTGGTCTTTTAATACAGCTTTATGCTGAGTGAGAGGAGACTGAGTGCTATTGCATGACAAAATCCGGTCTTTCAATCCAGCATTATTTGCTGAGTGATAGGAGGCCATTATGGAGAACACGTTTCAGAAACAACGAAAGTTTATTTATCACTAAGGTTTTCAACTCTCTCAATCACTGTAGAGGTGTTTTGATGTTTTGGGGTAATGAAAGTTGTAACTCTAATATGCTTATTCAAGCTTCGTATTGAAGCTGGAAAAGGACCCATTTTGTAGCAGCTATTTTTTTGAAGTAGCACCATCCAGTTGGTTTTGTTTGTGACTATTACAAAGATTTGCATTTTCATTTATTTTGTAGACAGCACATTCATTCCAGTTATCTCGGTACATAAAACTGCTCTCTCAAGAGTTTATGGTGTAAGCAGCAGTCAAGGCAATCTATGTTTGCCATTCTGAATATAAATGCTGATAAAATTAGTATTTTGCTTCATCTTCTTGTTTCTGGGTGAGGGGAGCTGCAATTTTATGCAACCATGTACCGAGGCAGGCAAGTGATTCTTGTTGTTGCTGCTGTTATTTGACTTGCTTTAAGTAGAAAAATTCAGTCTTGGTTGTGAGAGTGACCATTATGAAT

Fln Alignment:

Contig926___RFTFTEIKLATNSFDESRVIGVGGFGKVYKGELED----------GVVVAIKRANPQSEQGLTEFETEIELLSKLRHRHLVSLIGYCEDQNEMILVYEYMANGTLRSHLFGSDLPSLPWKQRLEICIGAARGLHYLHTGAERGIIHRDVKTTNILLDENFVAKMADFGLSKTGPALDHTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVICARPVINPTLPREQINLAEWAM-HWQQRGMLEQIIDPHLAGSYSPGSLKKFGEIAEKCLADDGRNRPTIGDVLWNLEYVLQLQEATVRSVSLNNSSTQLGNTALNLP
B8LKY1_____________KFTFNELKSATRNFRPESVLGGGGFGYVFKGWIEENGTAAVKPGTGLTVAVKTLNPDGLQGHKEWLAEVNFLGQLRHANLVKLIGYCIEDNQRLLVYEYMPRGSLENHLFRKGALPLPWSTRMKIALGAAKGLEFLHGGAEKAVIYRDFKTSNILLDSEYNAKLSDFGLARDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKHRSNGEQNLVEWARPYLVDKRKLYRLVDPRLSGHYSIKGAQKVAQLAHYCLSRDPKARPTMNDVVEVLTPLLSLKDTASSSFNYQALQSQHQSQHSHMP

SNPs (tot: 6)

Position	A %	C %	T %	Probability
2766	88		11	0.923564
2768	88		11	0.923564
2773		88	11	0.923564
2774	88		11	0.923564
2775		11	88	0.923564
2968		90	10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain