SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene925

Length: 2574 nt

UniGene Fasta

>sp_v3.0_unigene925
GGTGGTGTTTGGGATAATCAGGGTGCTGCACTTCGTTTTGGCTGTAGCCTCGTGTCCCTCTCTGGGATGTGCAGTTCTTCCTATATTACTCGCACTCAGTCTTCACGTTTCGTCTTCGTCTTCTGCTTGTAAGCCATTTTGAGCCTGAGTTGCTCCGTGTTTTTGCCCATTTATGCCTGAATTTTCATGGTTTTATTTCGTCTTCGTCTTCTGCTTGTAAGCCATTTTGAGCTTGAGTTGCTCTGTTTTTTTGCCCATTTATGCCTGAATTTTCATGGTTTTATCGGGAGTTTTCGTTGATTTGTTTGGAGAGCTCAATCAATTGAAGTGAAATCCAAGCTTTTGAATAATTTTTTTAAATTTTTTTTAAGGGATTATGTTGGGAGAATTTAAATTTTTCTGAGTTGGGTTTAATTAGAGGACAATGTGGGCATGATTGGATGGCTCAGACAACAGATTCTGATTACATAGAGGGTTTTTCAAGGACGTCCATTGCTTTCTCCAGTGACTTGTTGCAGAGATTGATCATGGGGAGGGGTTGTGAACATGATCAGGCTGAGAAAATTGATGAAGACATGGAATTGAACTTGGGTTTGTCTTTAGGAAGAGGATACCATGGAAATGAGGCAAAGAAGGAGAAGGAAGTTCCCTGTGGAGATCCTGACATGAAGAAGAAGAATAGCGAGAATTGTGCTGAACAAATTGGATTGCAGAGAGACAGTGATGGCTGTTTTAATTTTGGGCTTGAGATGAAAAATCAAGGTGTAATGATGGAGGAGGATGTGCTACACAATCAAAACCAGGATATGCTAGAACATCAGAAGAAGAGAGAATTACATGCCTTGAGAAGACAGAAGGCCAGGAAGAAAAGAGAAGAAAAACAGCTGCAGAGGGCCAAGAAGGAAGGAGTGGTCAAATCTTCGATTCATCACACCAACAACATGCCTGTCAATGAGTTTGTTCATGTGCCTCCTTCCTACGTCCCATTGCCGACTAGAGGCACCGTCTTTGGTGCTAGAGAGGAAGACAAGAGGGTCCTTGAGACCCAAATGTCTTCTCACAGGGAGAAAGAAAGGGCCGCTAAGGAGAGTCAGAACCATCAGAATCAGAATCAGCCTAGATCTGATAAGAAAGACAAGGTATGTGACCATGGGGGTATCTCCTGTATTGAGGACAAGAGCTCCAGGACATCTAACGAGATCAAGGTCATGGTCTCAAGTTCCAATGGCGTGGAGCCTCCCACCAGTAATGAAATCTCTTCCACTTCACACCCATCATTCCCTATGCTACCGATGCCTTACCCTTTTCCACTACTTCCTGGCAGTCAGCCTATGCCATTGCCTATGGGCTTTCCCTTCCCATACATGATGCCTTATTGGGGACCTCCAACAGCCCGTGAAACCTCCACCAAGGGTGGTGGAGTTATTCCACAAATGCCTCCTAGTGTTCTCCAACCTGTGGCTACTCGCCCGTTTCCTCTTTTTCAAATACCTGTCTCTGGAACACCGCCCAGTTGGGTTGCAGACTCACAAGCCCCGCCGATGACAGGGCCCATGCAATCTTCCCATGCTTCAGGGGCATCTTCAGGCAGGAGCTCATCGGCAATCTCGGACTATGAAAGCAGGTCTTCTCAAGGGACAAGTAGCAACGATACGAAGAGTCAATCCAGTACATCTTCTGCGTCAAAACCTTTGAATAGGGTTTCTTCTCTGAGCAATATGCAGGAACAAACTGTGGGTTCGTCAGAATTGAGTGCTTCTAGTCAACTAGAGCCTCCTAAATCCACTGAAGCTGCTCTTGAAAAGGCACCTTCTGTTACAGCTCAATCTGCACTGGCAACTTCAACCACAACAGCCACACATGAAATACAACTCACAGAAGCCTCGTCTTTCACCAAGTCCTCCCAACAAGTATCTGCTTCAAATGCTACAGCAGACCAAACAGGTAATCCAAATATTTCTGAAGATAAAAGGCCTCCAATTCAATCCTCATTGCCCAAAATGCCCTGTGTTTCAACTACTGGACCAGGCCCAAATGGGAAAACAATCAGTGGATTCTTGTACAGCTATAGCAGAGATGAGGTTAGTATAGTTTGTGTGTGCCATGGCACATTCTTGTCACCTGCAGAGTTTGTGCAGCATTCAGGTCGTACAGACCTTTCACATCCTGAAAGGCACATTGTTGTCAATCCATCTCCATCTTCAAATGAAGATGCATCAGCCCTGGAATGAAAAGTTATCGAAAGAATATCTTGGATGTAATCCCAAAAAAAAGTTTCCCTGAAGGATTATCTCTATGTCACTTACCCCAGAAAAGGTTTTTGAAATTGAGTGACTAGACATCCAATTTGGAAGCACTCCTCTTCTGCTCACAGAGCAGAATTTTGCTGCTAGACCTGGCAATCCCAAGATTAGGATTCGCATGGCGATATTTACATGTTGGATTTTCCATTGCTCCTGGCAAAGGAGTTGATTCTGAAGTGTACAGGGCAATTGTAACAAAATGACATGAAATTCTGCTTGTAATTTTTGTTGAATGCAGCTAATTTTGTTGGATTCAAAGTTCTCAAACTAC

Ace file of the UniGene sp_v3.0_unigene925

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ninja-family protein AFP3 [Arabidopsis thaliana] ref\|NP_001030794.1\| Ninja-family protein AFP3 [Arabidopsis thaliana] ref\|NP_001078222.1\| Ninja-family protein AFP3 [Arabidopsis thaliana] sp\|Q94F39.1\|AFP3_ARATH RecName: Full=Ninja-family protein AFP3; AltN	-	-	5.0e-21	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%

Source	Gene names
Sma3	AFP-D1; AFP3; At3g29575; GSVIVT00012270001; GSVIVT00038029001; LOC_Os07g41160; MWE13.5; OSJNBb0018H10.21; OSJNBb0039M16.11; Os07g0602900; POPTRDRAFT_564305;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Nuclear transport factor 2	IPR002075	-	-
Sma3	Protein of unknown function DUF1675	IPR012463	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Nuclear transport factor 2, Eukaryote	IPR018222	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G29575.1	AFP3 ABI five binding protein 3 chr3:11382416-11383657 REVERSE LENGTH=231	2.0e-25	51%
RefSeq	Arabidopsis thaliana	NP_001078222.1	Ninja-family protein AFP3 [Arabidopsis thaliana]	3.0e-25	51%
RefSeq	Populus trichocarpa	XP_002312284.1	predicted protein [Populus trichocarpa]	8.0e-23	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZJ6

Fln msg: your sequence is longer than subject: 597 - 143

Fln protein: MAQTTDSDYIEGFSRTSIAFSSDLLQRLIMGRGCEHDQAEKIDEDMELNLGLSLGRGYHGNEAKKEKEVPCGDPDMKKKNSENCAEQIGLQRDSDGCFNFGLEMKNQGVMMEEDVLHNQNQDMLEHQKKRELHALRRQKARKKREEKQLQRAKKEGVVKSSIHHTNNMPVNEFVHVPPSYVPLPTRGTVFGAREEDKRVLETQMSSHREKERAAKESQNHQNQNQPRSDKKDKVCDHGGISCIEDKSSRTSNEIKVMVSSSNGVEPPTSNEISSTSHPSFPMLPMPYPFPLLPGSQPMPLPMGFPFPYMMPYWGPPTARETSTKGGGVIPQMPPSVLQPVATRPFPLFQIPVSGTPPSWVADSQAPPMTGPMQSSHASGASSGRSSSAISDYESRSSQGTSSNDTKSQSSTSSASKPLNRVSSLSNMQEQTVGSSELSASSQLEPPKSTEAALEKAPSVTAQSALATSTTTATHEIQLTEASSFTKSSQQVSASNATADQTGNPNISEDKRPPIQSSLPKMPCVSTTGPGPNGKTISGFLYSYSRDEVSIVCVCHGTFLSPAEFVQHSGRTDLSHPERHIVVNPSPSSNEDASALE*

Protein Length: 598

Fln nts: GGTGGTGTTTGGGATAATCAGGGTGCTGCACTTCGTTTTGGCTGTAGCCTCGTGTCCCTCTCTGGGATGTGCAGTTCTTCCTATATTACTCGCACTCAGTCTTCACGTTTCGTCTTCGTCTTCTGCTTGTAAGCCATTTTGAGCCTGAGTTGCTCCGTGTTTTTGCCCATTTATGCCTGAATTTTCATGGTTTTATTTCGTCTTCGTCTTCTGCTTGTAAGCCATTTTGAGCTTGAGTTGCTCTGTTTTTTTGCCCATTTATGCCTGAATTTTCATGGTTTTATCGGGAGTTTTCGTTGATTTGTTTGGAGAGCTCAATCAATTGAAGTGAAATCCAAGCTTTTGAATAATTTTTTTAAATTTTTTTTAAGGGATTATGTTGGGAGAATTTAAATTTTTCTGAGTTGGGTTTAATTAGAGGACAATGTGGGCATGATTGG_-_ATGGCTCAGACAACAGATTCTGATTACATAGAGGGTTTTTCAAGGACGTCCATTGCTTTCTCCAGTGACTTGTTGCAGAGATTGATCATGGGGAGGGGTTGTGAACATGATCAGGCTGAGAAAATTGATGAAGACATGGAATTGAACTTGGGTTTGTCTTTAGGAAGAGGATACCATGGAAATGAGGCAAAGAAGGAGAAGGAAGTTCCCTGTGGAGATCCTGACATGAAGAAGAAGAATAGCGAGAATTGTGCTGAACAAATTGGATTGCAGAGAGACAGTGATGGCTGTTTTAATTTTGGGCTTGAGATGAAAAATCAAGGTGTAATGATGGAGGAGGATGTGCTACACAATCAAAACCAGGATATGCTAGAACATCAGAAGAAGAGAGAATTACATGCCTTGAGAAGACAGAAGGCCAGGAAGAAAAGAGAAGAAAAACAGCTGCAGAGGGCCAAGAAGGAAGGAGTGGTCAAATCTTCGATTCATCACACCAACAACATGCCTGTCAATGAGTTTGTTCATGTGCCTCCTTCCTACGTCCCATTGCCGACTAGAGGCACCGTCTTTGGTGCTAGAGAGGAAGACAAGAGGGTCCTTGAGACCCAAATGTCTTCTCACAGGGAGAAAGAAAGGGCCGCTAAGGAGAGTCAGAACCATCAGAATCAGAATCAGCCTAGATCTGATAAGAAAGACAAGGTATGTGACCATGGGGGTATCTCCTGTATTGAGGACAAGAGCTCCAGGACATCTAACGAGATCAAGGTCATGGTCTCAAGTTCCAATGGCGTGGAGCCTCCCACCAGTAATGAAATCTCTTCCACTTCACACCCATCATTCCCTATGCTACCGATGCCTTACCCTTTTCCACTACTTCCTGGCAGTCAGCCTATGCCATTGCCTATGGGCTTTCCCTTCCCATACATGATGCCTTATTGGGGACCTCCAACAGCCCGTGAAACCTCCACCAAGGGTGGTGGAGTTATTCCACAAATGCCTCCTAGTGTTCTCCAACCTGTGGCTACTCGCCCGTTTCCTCTTTTTCAAATACCTGTCTCTGGAACACCGCCCAGTTGGGTTGCAGACTCACAAGCCCCGCCGATGACAGGGCCCATGCAATCTTCCCATGCTTCAGGGGCATCTTCAGGCAGGAGCTCATCGGCAATCTCGGACTATGAAAGCAGGTCTTCTCAAGGGACAAGTAGCAACGATACGAAGAGTCAATCCAGTACATCTTCTGCGTCAAAACCTTTGAATAGGGTTTCTTCTCTGAGCAATATGCAGGAACAAACTGTGGGTTCGTCAGAATTGAGTGCTTCTAGTCAACTAGAGCCTCCTAAATCCACTGAAGCTGCTCTTGAAAAGGCACCTTCTGTTACAGCTCAATCTGCACTGGCAACTTCAACCACAACAGCCACACATGAAATACAACTCACAGAAGCCTCGTCTTTCACCAAGTCCTCCCAACAAGTATCTGCTTCAAATGCTACAGCAGACCAAACAGGTAATCCAAATATTTCTGAAGATAAAAGGCCTCCAATTCAATCCTCATTGCCCAAAATGCCCTGTGTTTCAACTACTGGACCAGGCCCAAATGGGAAAACAATCAGTGGATTCTTGTACAGCTATAGCAGAGATGAGGTTAGTATAGTTTGTGTGTGCCATGGCACATTCTTGTCACCTGCAGAGTTTGTGCAGCATTCAGGTCGTACAGACCTTTCACATCCTGAAAGGCACATTGTTGTCAATCCATCTCCATCTTCAAATGAAGATGCATCAGCCCTGGAATGA___AAAGTTATCGAAAGAATATCTTGGATGTAATCCCAAAAAAAAGTTTCCCTGAAGGATTATCTCTATGTCACTTACCCCAGAAAAGGTTTTTGAAATTGAGTGACTAGACATCCAATTTGGAAGCACTCCTCTTCTGCTCACAGAGCAGAATTTTGCTGCTAGACCTGGCAATCCCAAGATTAGGATTCGCATGGCGATATTTACATGTTGGATTTTCCATTGCTCCTGGCAAAGGAGTTGATTCTGAAGTGTACAGGGCAATTGTAACAAAATGACATGAAATTCTGCTTGTAATTTTTGTTGAATGCAGCTAATTTTGTTGGATTCAAAGTTCTCAAACTAC

Fln Alignment:

Contig925___PKMPCVSTTGPGPNGKTISGFLYSYSRDEVSIVCVCHGTFLSPAEFVQHSGRTDLSHPERHIVVNPSPSSNEDAS
A9NZJ6_____________PDLPWVTTSGIGPNGKTISGVMYRYNRNQVKIVCACHGRHMSPSEFVQHAGGADTSNPDNNLVVNSFSNGNHTSA

SNPs (tot: 63)

Position	A %	C %	G %	T %	Probability
950		33		33	0.997753
952	66	33			0.997452
954		33	66		0.997452
955	33		66		1.0
1080		87		12	0.992554
1233		11	88		0.923564
1235	88			11	0.923564
1237	11	88			0.923564
1241		88		11	0.923564
1242		88		11	0.923564
1243	88		11		0.923564
1244		88	11		0.923564
1246	88			11	0.923564
1249	88	11			0.923564
1251		11		88	0.923564
1252			88	11	0.923564
1253	88	11			0.923564
1432	83		16		0.994512
1477		16		83	0.994512
1478		83	16		0.994512
1500		80		20	0.995493
1776		87	12		0.992554
1779		87	12		0.992554
1781	87		12		0.992554
1783	87	12			0.992554
1786		87		12	0.992554
1787		87	12		0.992554
1788	87		12		0.992554
1792	70			30	1.0
1793	70	30			1.0
1794	10		90		0.90298
1797		10	90		0.90298
1805	81		18		0.999994
1806	72	27			1.0
1807	70	10		20	0.999998
1808	70			10	0.999998
1809			90	10	0.90298
1810			80	20	0.999996
1811		90	10		0.90298
1815		90	10		0.90298
1819	10			90	0.90298
1820		10	90		0.90298
1822		10		90	0.90298
1902	90	10			0.90298
1906		90	10		0.90298
1908		90	10		0.90298
1911	90			10	0.90298
1912	90			10	0.90298
1913		90	10		0.90298
1914	90		10		0.90298
1915	90	10			0.90298
1921	10			90	0.90298
2109	86		8	4	0.999539
2111		8	91		0.999807
2113		91		8	0.999807
2114	87		8	4	0.999414
2116	91	8			0.999807
2119		90	9		0.999842
2120	4		9	86	0.999642
2246		45	54		1.0
2267	30			70	1.0
2268	10	90			0.90298
2271	80	20			0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
668	679	GAA GAA GAA GAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain