SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene921

Length: 2128 nt

UniGene Fasta

>sp_v3.0_unigene921
ATTTCGGAATCCATTCGATTGCAATACTATTAGATTGCAGACGCGAAAGATGAGCACTTCTCTGTTATACATAGCTGCGAACATTTTTTTGTTAACTGCACTGCAAAGATCGGAGGCCCAATGTGGTCCAACCTCGACAGTAGATTTCAACAGAAGGGATTTTCCTCCTGGATTTGTATTTGGCACCGCCTCCTCAGCTTTCCAGTACGAGGGTGCAGTAAAAGAAGATGGAAGAGGGCCCAGTGTGTGGGATACATATTCTCATAAATTTGGGCATATACTGGATTTCAGCAACGCAGATGTTGCAGAAGATCAATATCATCGTTACAGGGAGGATATCCAGCTTATGGTAGATATGGGGATGGATGCCTACAGATTCTCCATCTCTTGGTCCCGCATATTCCCCAATGGAAATGGAGATATCAACCAAGCAGGGGTCGATCATTACAATAAATTCATAGATGCGCTCCTGGAAAACGGAATCGAGCCATACGTGACTCTGTATCACTGGGATCTTCCACAAGCGCTAGAGGATGCCTATAAGGGCTGGCTAAGCCCTAAAATTATAGATGACTATGCGAAGTTTGCAGAAACATGCTTCGAGAAATTTGGAGACAGAGTGAAGAACTGGATGACATTCAATGAGCCTCACACAGTCTCAGTTCAGGGCTACGATGCAGGCCTCTTTGCTCCTGGGCGATGCTCCGTTCTGTTCCACCTCTTTTGCCGCGCTGGGAATTCCGCTACAGAGCCCTATATCGTTGCTCATAACATTCTTCTTTCTCATGCCAAAGCCGTGGACATTTACAGGACAAAATTTAAGGCAAAGCAAGGCGGAAGAGTCGGTATGGCTTTGGATGTGATCTGGTACGAGCCAATGTCCGAGTCTCCTGAAGATATTGCAGCTACACAGAGAGCGCAAGATTTCCAGTTGGGATGGTTCATGGATCCACTGTTTTTCGGAGACTATCCGGCGTCCATGAGAGAGAGAGTTGGCAATCGACTGCCGTTATTCTCCTCAGAAGAGTCGAGTCAGATAAAAGGTTCGCTGGATTTCGTGGGCGTCAACCACTATACCACATATTATGTCAAGCACAACCAAACCGACATAATCTCAGTTCTGCTCAACGATACTCTGGCCGACTCCGGCACTTTGGCCCTCCCCTTCAAGGATGGAAAAGCCATAGGTGACAAAGCATCCTCCATATGGCTTTACATAGTGCCTCAAGGAATCCGGAGTCTCATGAATTACATAAAACAACGTTACAACAACCCTCCTGTCATGATCACGGAGAACGGGATGGATGACTCCAACGATATTTTCATTCCCCTGAAAAAGGCATTGAACGATCAGAAACGGATAAAATATCACACAGATTATCTCTCCAACCTTGCTGCTGCGATCAAGGAAGATGGCTGTAACGTTGGCGGTTATTTTGTGTGGTCTCTGCTGGATAATTGGGAATGGGAAGCGGGGTACACTTCAAGATTTGGGCTCTATTTTGTTGACTACAAACACAACCTCACCAGATATCCCAAAGATTCTGTCCAATGGTTCAAATCTTTTCTCGCTCCAAAGATACACCGACCTCTTCATTATTCAACATTTCCTTCTTTTCTTTAACTGCCGGATTGACATTAGCATCCCAAAATACCCAATACATCCGTTTGACAATTTATTTATTATATTTGTTTCAGCAATAAATGCAATCTCAGGGGCATATTTGCCTTGTAACGTTTGACAAAGTCTAGCTGGTGTAGTCATTGAACAATAAATTATTTATTCTGTTGAACAATAAATTATTTCATTGCCATGTGTAAGTAGCTGGACTGCACCAAAAACTGTCCTCCAGCGTGTTCATCTGACAAGATGAGAATCGCATAACACAATAATTCATTGTTGGATGCTATAGCCAGCGGTATGAGAGGACACCAAAAACATGATTTTGTTTGATTTCCTTTTCAAGGTATGGTGCTGTGCCCTTGTCGTATTGTATAGTATCCCTGTACACATCGCCACACTTGGAAACTTGTTAAGCAGTAGCCAAGACACACACCGAACAAACTACTAGTGCAAGTAAACGACCAAATAAGAAATTGCAATCCACTGTTTTCATTATTTTGACCC

Ace file of the UniGene sp_v3.0_unigene921

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-glucosidase 6 n=3 Tax=Oryza sativa RepID=BGL06_ORYSJ	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Sma3	Beta-glucosidase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Prunasin beta-glucosidase.	EC:3.2.1.118	-	1.119e-10	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Cyanoamino acid metabolism	00460		1.119e-10	%
Sma3	Beta-glucosidase.	EC:3.2.1.21	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Cyanoamino acid metabolism	00460		0.0	%
Sma3	Starch and sucrose metabolism	00500		0.0	%
Sma3	Phenylpropanoid biosynthesis	00940		0.0	%
Sma3	Biosynthesis of secondary metabolites	01110		0.0	%
Sma3	Beta-D-fucosidase.	EC:3.2.1.38	-	5.843e-07	-

Source	Gene names
Sma3	AH1; AT3G18080; AT4g27820; AT4g27830; At1g02850; At1g26560; At1g61810; At1g75940; At2g44450; At2g44480; At2g44490; At3g18080; At3g21370; At3g60120; At3g60130; At3g60140; At4g27830; At5g24540; At5g36890; At5g42260; At5g44640; B1168A08.29-2; B1168A08.31; BG

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	beta-mannosidase activity	GO:0004567	Molecular Function	-
Sma3	beta-glucosidase activity	GO:0008422	Molecular Function	-
Sma3	beta-D-fucosidase activity	GO:0033907	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	amygdalin beta-glucosidase activity	GO:0047668	Molecular Function	-
Sma3	prunasin beta-glucosidase activity	GO:0050224	Molecular Function	-
Sma3	raucaffricine beta-glucosidase activity	GO:0050247	Molecular Function	-
Sma3	strictosidine beta-glucosidase activity	GO:0050422	Molecular Function	-
Sma3	beta-primeverosidase activity	GO:0050535	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cytokinin mediated signaling pathway	GO:0009736	Biological Process	-
Sma3	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	-
Sma3	cellulose catabolic process	GO:0030245	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 1, beta-glucosidase	IPR017736	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G26560.1	BGLU40 beta glucosidase 40 chr1:9178513-9181726 FORWARD LENGTH=510	72%
RefSeq	Arabidopsis thaliana	NP_173978.1	beta glucosidase 40 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002311330.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ09

Fln msg:

Fln protein: MSTSLLYIAANIFLLTALQRSEAQCGPTSTVDFNRRDFPPGFVFGTASSAFQYEGAVKEDGRGPSVWDTYSHKFGHILDFSNADVAEDQYHRYREDIQLMVDMGMDAYRFSISWSRIFPNGNGDINQAGVDHYNKFIDALLENGIEPYVTLYHWDLPQALEDAYKGWLSPKIIDDYAKFAETCFEKFGDRVKNWMTFNEPHTVSVQGYDAGLFAPGRCSVLFHLFCRAGNSATEPYIVAHNILLSHAKAVDIYRTKFKAKQGGRVGMALDVIWYEPMSESPEDIAATQRAQDFQLGWFMDPLFFGDYPASMRERVGNRLPLFSSEESSQIKGSLDFVGVNHYTTYYVKHNQTDIISVLLNDTLADSGTLALPFKDGKAIGDKASSIWLYIVPQGIRSLMNYIKQRYNNPPVMITENGMDDSNDIFIPLKKALNDQKRIKYHTDYLSNLAAAIKEDGCNVGGYFVWSLLDNWEWEAGYTSRFGLYFVDYKHNLTRYPKDSVQWFKSFLAPKIHRPLHYSTFPSFL*

Protein Length: 526

Fln nts: ATTTCGGAATCCATTCGATTGCAATACTATTAGATTGCAGACGCGAAAG_-_ATGAGCACTTCTCTGTTATACATAGCTGCGAACATTTTTTTGTTAACTGCACTGCAAAGATCGGAGGCCCAATGTGGTCCAACCTCGACAGTAGATTTCAACAGAAGGGATTTTCCTCCTGGATTTGTATTTGGCACCGCCTCCTCAGCTTTCCAGTACGAGGGTGCAGTAAAAGAAGATGGAAGAGGGCCCAGTGTGTGGGATACATATTCTCATAAATTTGGGCATATACTGGATTTCAGCAACGCAGATGTTGCAGAAGATCAATATCATCGTTACAGGGAGGATATCCAGCTTATGGTAGATATGGGGATGGATGCCTACAGATTCTCCATCTCTTGGTCCCGCATATTCCCCAATGGAAATGGAGATATCAACCAAGCAGGGGTCGATCATTACAATAAATTCATAGATGCGCTCCTGGAAAACGGAATCGAGCCATACGTGACTCTGTATCACTGGGATCTTCCACAAGCGCTAGAGGATGCCTATAAGGGCTGGCTAAGCCCTAAAATTATAGATGACTATGCGAAGTTTGCAGAAACATGCTTCGAGAAATTTGGAGACAGAGTGAAGAACTGGATGACATTCAATGAGCCTCACACAGTCTCAGTTCAGGGCTACGATGCAGGCCTCTTTGCTCCTGGGCGATGCTCCGTTCTGTTCCACCTCTTTTGCCGCGCTGGGAATTCCGCTACAGAGCCCTATATCGTTGCTCATAACATTCTTCTTTCTCATGCCAAAGCCGTGGACATTTACAGGACAAAATTTAAGGCAAAGCAAGGCGGAAGAGTCGGTATGGCTTTGGATGTGATCTGGTACGAGCCAATGTCCGAGTCTCCTGAAGATATTGCAGCTACACAGAGAGCGCAAGATTTCCAGTTGGGATGGTTCATGGATCCACTGTTTTTCGGAGACTATCCGGCGTCCATGAGAGAGAGAGTTGGCAATCGACTGCCGTTATTCTCCTCAGAAGAGTCGAGTCAGATAAAAGGTTCGCTGGATTTCGTGGGCGTCAACCACTATACCACATATTATGTCAAGCACAACCAAACCGACATAATCTCAGTTCTGCTCAACGATACTCTGGCCGACTCCGGCACTTTGGCCCTCCCCTTCAAGGATGGAAAAGCCATAGGTGACAAAGCATCCTCCATATGGCTTTACATAGTGCCTCAAGGAATCCGGAGTCTCATGAATTACATAAAACAACGTTACAACAACCCTCCTGTCATGATCACGGAGAACGGGATGGATGACTCCAACGATATTTTCATTCCCCTGAAAAAGGCATTGAACGATCAGAAACGGATAAAATATCACACAGATTATCTCTCCAACCTTGCTGCTGCGATCAAGGAAGATGGCTGTAACGTTGGCGGTTATTTTGTGTGGTCTCTGCTGGATAATTGGGAATGGGAAGCGGGGTACACTTCAAGATTTGGGCTCTATTTTGTTGACTACAAACACAACCTCACCAGATATCCCAAAGATTCTGTCCAATGGTTCAAATCTTTTCTCGCTCCAAAGATACACCGACCTCTTCATTATTCAACATTTCCTTCTTTTCTTTAA___CTGCCGGATTGACATTAGCATCCCAAAATACCCAATACATCCGTTTGACAATTTATTTATTATATTTGTTTCAGCAATAAATGCAATCTCAGGGGCATATTTGCCTTGTAACGTTTGACAAAGTCTAGCTGGTGTAGTCATTGAACAATAAATTATTTATTCTGTTGAACAATAAATTATTTCATTGCCATGTGTAAGTAGCTGGACTGCACCAAAAACTGTCCTCCAGCGTGTTCATCTGACAAGATGAGAATCGCATAACACAATAATTCATTGTTGGATGCTATAGCCAGCGGTATGAGAGGACACCAAAAACATGATTTTGTTTGATTTCCTTTTCAAGGTATGGTGCTGTGCCCTTGTCGTATTGTATAGTATCCCTGTACACATCGCCACACTTGGAAACTTGTTAAGCAGTAGCCAAGACACACACCGAACAAACTACTAGTGCAAGTAAACGACCAAATAAGAAATTGCAATCCACTGTTTTCATTATTTTGACCC

Fln Alignment:

Contig921___TVDFNRRDFPPGFVFGTASSAFQYEGAVKEDGRGPSVWDTYSHKFGHILDFSNADVAEDQYHRYREDIQLMVDMGMDAYRFSISWSRIFPNGNGDINQAGVDHYNKFIDALLENGIEPYVTLYHWDLPQALEDAYKGWLSPKIIDDYAKFAETCFEKFGDRVKNWMTFNEPHTVSVQGYDAGLFAPGRCSVLFHLFCRAGNSATEPYIVAHNILLSHAKAVDIYRTKFKAKQGGRVGMALDVIWYEPMSESPEDIAATQRAQDFQLGWFMDPLFFGDYPASMRERVGNRLPLFSSEESSQIKGSLDFVGVNHYTTYYV---KHNQTDIISVLLNDTLADSGTLALPFKDGKAIGDKASSIWLYIVPQGIRSLMNYIKQRYNNPPVMITENGMDDSNDIFIPLKKALNDQKRIKYHTDYLSNLAAAIKEDGCNVGGYFVWSLLDNWEWEAGYTSRFGLYFVDYKHNLTRYPKDSVQWFKSFL
B8LQ09_____________TGGLSRASFPKGFVFGTATSAYQVEGAAKTDGRGPSIWDTFILQPGIIANNATADVSVDEYHRYKTDVELMVKMNMDAYRFSISWSRIFPKGAGQINYKGVQYYNNLINYLLKRGITPYANLYHYDLPQGLETAYGGLLNSKVVDDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCSAPFG-NCTAGNSATEPYIVAHNLLLSHATAVKIYREKYQPIQKGKIGILLDFVWYEPLTNSSEDQAAAQRSRDFHIGWFLHPIVYGKYPDSMVEIVGKRLPKFTKEQYQMVKGSIDYLGVNQYTAYYMYDPKQPKQNVTGYQMDWNVGFAYA-----RNGVPIGPKANSYWLYIVPWGLYKAVTYIKEHYGNPTMILSENGMDDPGNVTLP--AGLHDTTRVNYYKSYLQNLIGAM-NDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYVDFT-NLKRYPKMSAYWFSKLL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1970	60			40	1.0
1976		60		40	1.0
2072			40	60	1.0
2105		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain