SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene918

Length: 2175 nt

UniGene Fasta

>sp_v3.0_unigene918
GGAGCAAAAAATAAACAGCAGGACCTAGACTATCACACAGTTCTTAGTTCCTAATGGTCCTTTGGCCATTTTGTGGAGCACGTTCTGCTGCGTATTTTGCAGTCTCGGAAGATCCCTACATCGTAGCTCGTTGTTAGAACCCACCGACTGACATTTTCCGACGAAATCGCGCGCCGATCTGCTCTCCAATTGATGAATTTCCTGCACATTAGATCTGTTTGGCTCTGGAAGGGGTTTTCTGGAAGTTTCAGGCAAGAGGGAAGTTGAAGGCCGTGATTTGCGCATTGATACTAGCTAGAGCGGCGGCAAATCATTGATTCGAATCTGCAAGGAAGGGGATCAGATGCAGTAGGATGTGAAAAATTGGTCTATGAAAAGGGTCAGACCTGGTTTAGGTAAAATGAGGAGGAGGAGTTTGGTATATTGATGGGGCATGGGGGGCATGCTTTTTCCATTAATGAATCGTTTAATGGTGCTGAAACAGAGAAAATGGATCTGGGCTTCTCTGTTTCTCCAAGCTCCGATGCCTCATCGCCGTCAACATCGACATCTTCAGCCACCAGTAATAACTATATTGAGCACACAGTCTCAAAGATGGATACCTTGGCAGGGATAGCCATCAAGTATGGGGTCGAGGTTTCAGATATTAAACGGATGAATGGATTGATGACAGATCTTCAAATGTTTGCTCACAAGACTTTGCACATACCACTTCCAGGAAGGCACCCACCTTCGACTGCTTTGTCAAATAGCCCCAAAACGCCCAGCTCTATTACTTCTCGATTACCACCACGTTATGGGATTCGCTCTTCATACAGGAATAATGCTTCTGATTCCACAAATGTCTCTAAGACAAAGAAGTCTGAGAAGAGACCGGTTTCTCTTGCAATGAGCCTCTTAAGAGGTTATTATGGTCTTTCACCATCACAGGAGAGTATCGAAGGAACAGAGATGAAGGTATACAGAGCAGACAATGAACTACACACAGAAGGTGAACCATTTAGCCCGCCACAAAGTTATGCAAATGGTGGACATCAAGCTGTAAATAGAACGTCTAAAATTTTCTTGAATGGAGATCTACTGAATAAGGCTGAAAAGGGTGGAAGAGGTGAATATTCCTTAAAAACTGTTGATGATCTCCTTTTCAAGGAGGTACTTGTTACGGATTCCAGTTGTAATGAAATCGACAAAGCAAGTGAAAGCTCAGTTAGAAGGCGAACCAAGGTTGAAGGGATGGACTACTCAACTAGCCCTACAGAAAATGGCCTTAAGCAGGAATCCAGTTATACTGCAAAAGGTGGAAAAGGTCTGTCCTTGAGGCCAAGAACTGGTGGTAAATTTTCAATGACAAGTGATGGTACAATTGCACTTGATCATCAGTTCACAATCAGTGATCCTTTTATGGCTGATGCATTTGTTACAGGAGTTGGCTCATTAAGAGGGTTGCGGGAAAGTCCGGGGAATGGAAAACCTGCAGAAGAATTAATTTCAAAGGTCAGGAGATCATCAAGCACTCCTAGTCTGCAAGATTCTGGAAGGATCTCGCCAATCAAATCAGGTTCACGGCGGCAAACTAAGGGTGATATTCAGGGTGTATCGACATCTTCTGTGCCCCGACCTATTTTTGAAGGAATACCCAGACCATTAAATGGGAGGCGGAACAAGGCGGCAATTGATTAATGTAATATTATTAGTTATTTTTTTACGCTATCTGCTTGCTCAAGCAATATATAAGTTTCTTGATTGGCATTGGCATGCTGAATATTGGATGCATGTGAAGCTCTTTCTGCAATATTTTGATAGGTCGATAGTCTAGATTGGAAAATTCATTTATTTCATCCACTTCTATTATGTTCGTTGCAAAAGGCATTTGGATACATGTATGTGCTCTTGATTAAACACTTCGGACATGACAATGTTCCCGAGGCTATATTGTTTCCCTTTTGTTGTTAAACAAGGAGGCATACATTTGCCTTGTATAATGTAGTGAATAATATTACACTTTCCCCATACAGGTTTATGTCCAGGTCTGGAGTATTATTCAAGAAATTCTCTAAATATATGAAATTCATTGATCAAATGATATATGTACAAGGTCTCTTTGCGAGACCTCTTGCAGAGAAAGTTTACTGCTGTTCATGAAATACTCTTTTAAAGCTTTAGTTCTTTCATTCC

Ace file of the UniGene sp_v3.0_unigene918

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] gb\|AAM98176.1\| unknown protein [Arabidopsis thaliana] gb\|AAP37868.1\| At5g08200 [Arabidopsis thaliana] gb\|AED91270.1\| peptidoglycan-binding LysM domain-containing protein [Arabidop	-	-	1.0e-36	33%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	39%

Source	Gene names
Sma3	RCOM_1669060; VITISV_017964;

Source	GOs	Term	Type	e value	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	0.0	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Fumarate lyase	IPR000362	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: D7T9H0

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MGHGGHAFSINESFNGAETEKMDLGFSVSPSSDASSPSTSTSSATSNNYIEHTVSKMDTLAGIAIKYGVEVSDIKRMNGLMTDLQMFAHKTLHIPLPGRHPPSTALSNSPKTPSSITSRLPPRYGIRSSYRNNASDSTNVSKTKKSEKRPVSLAMSLLRGYYGLSPSQESIEGTEMKVYRADNELHTEGEPFSPPQSYANGGHQAVNRTSKIFLNGDLLNKAEKGGRGEYSLKTVDDLLFKEVLVTDSSCNEIDKASESSVRRRTKVEGMDYSTSPTENGLKQESSYTAKGGKGLSLRPRTGGKFSMTSDGTIALDHQFTISDPFMADAFVTGVGSLRGLRESPGNGKPAEELISKVRRSSSTPSLQDSGRISPIKSGSRRQTKGDIQGVSTSSVPRPIFEGIPRPLNGRRNKAAID*

Protein Length: 419

Fln nts: GGAGCAAAAAATAAACAGCAGGACCTAGACTATCACACAGTTCTTAGTTCCTAATGGTCCTTTGGCCATTTTGTGGAGCACGTTCTGCTGCGTATTTTGCAGTCTCGGAAGATCCCTACATCGTAGCTCGTTGTTAGAACCCACCGACTGACATTTTCCGACGAAATCGCGCGCCGATCTGCTCTCCAATTGATGAATTTCCTGCACATTAGATCTGTTTGGCTCTGGAAGGGGTTTTCTGGAAGTTTCAGGCAAGAGGGAAGTTGAAGGCCGTGATTTGCGCATTGATACTAGCTAGAGCGGCGGCAAATCATTGATTCGAATCTGCAAGGAAGGGGATCAGATGCAGTAGGATGTGAAAAATTGGTCTATGAAAAGGGTCAGACCTGGTTTAGGTAAAATGAGGAGGAGGAGTTTGGTATATTG_-_ATGGGGCATGGGGGGCATGCTTTTTCCATTAATGAATCGTTTAATGGTGCTGAAACAGAGAAAATGGATCTGGGCTTCTCTGTTTCTCCAAGCTCCGATGCCTCATCGCCGTCAACATCGACATCTTCAGCCACCAGTAATAACTATATTGAGCACACAGTCTCAAAGATGGATACCTTGGCAGGGATAGCCATCAAGTATGGGGTCGAGGTTTCAGATATTAAACGGATGAATGGATTGATGACAGATCTTCAAATGTTTGCTCACAAGACTTTGCACATACCACTTCCAGGAAGGCACCCACCTTCGACTGCTTTGTCAAATAGCCCCAAAACGCCCAGCTCTATTACTTCTCGATTACCACCACGTTATGGGATTCGCTCTTCATACAGGAATAATGCTTCTGATTCCACAAATGTCTCTAAGACAAAGAAGTCTGAGAAGAGACCGGTTTCTCTTGCAATGAGCCTCTTAAGAGGTTATTATGGTCTTTCACCATCACAGGAGAGTATCGAAGGAACAGAGATGAAGGTATACAGAGCAGACAATGAACTACACACAGAAGGTGAACCATTTAGCCCGCCACAAAGTTATGCAAATGGTGGACATCAAGCTGTAAATAGAACGTCTAAAATTTTCTTGAATGGAGATCTACTGAATAAGGCTGAAAAGGGTGGAAGAGGTGAATATTCCTTAAAAACTGTTGATGATCTCCTTTTCAAGGAGGTACTTGTTACGGATTCCAGTTGTAATGAAATCGACAAAGCAAGTGAAAGCTCAGTTAGAAGGCGAACCAAGGTTGAAGGGATGGACTACTCAACTAGCCCTACAGAAAATGGCCTTAAGCAGGAATCCAGTTATACTGCAAAAGGTGGAAAAGGTCTGTCCTTGAGGCCAAGAACTGGTGGTAAATTTTCAATGACAAGTGATGGTACAATTGCACTTGATCATCAGTTCACAATCAGTGATCCTTTTATGGCTGATGCATTTGTTACAGGAGTTGGCTCATTAAGAGGGTTGCGGGAAAGTCCGGGGAATGGAAAACCTGCAGAAGAATTAATTTCAAAGGTCAGGAGATCATCAAGCACTCCTAGTCTGCAAGATTCTGGAAGGATCTCGCCAATCAAATCAGGTTCACGGCGGCAAACTAAGGGTGATATTCAGGGTGTATCGACATCTTCTGTGCCCCGACCTATTTTTGAAGGAATACCCAGACCATTAAATGGGAGGCGGAACAAGGCGGCAATTGATTAATGTAATATTATTAGTTATTTTTTTACGCTATCTGCTTGCTCAAGCAATATATAAGTTTCTTGATTGGCATTGGCATGCTGAATATTGGATGCATGTGAAGCTCTTTCTGCAATATTTTGATAGGTCGATAGTCTAGATTGGAAAATTCATTTATTTCATCCACTTCTATTATGTTCGTTGCAAAAGGCATTTGGATACATGTATGTGCTCTTGATTAAACACTTCGGACATGACAATGTTCCCGAGGCTATATTGTTTCCCTTTTGTTGTTAAACAAGGAGGCATACATTTGCCTTGTATAATGTAGTGAATAATATTACACTTTCCCCATACAGGTTTATGTCCAGGTCTGGAGTATTATTCAAGAAATTCTCTAAATATATGAAATTCATTGATCAAATGATATATGTACAAGGTCTCTTTGCGAGACCTCTTGCAGAGAAAGTTTACTGCTGTTCATGAAATACTCTTTTAAAGCTTTAGTTCTTTCATTCC

Fln Alignment:

Contig918___IEHTVSKMDTLAGIAIKYGVEVSDIKRMNGLMTDLQMFAHKTLHIPLPGRHPPSTALSNSPKTPSSITSRLPPRYGIRSSYRNNASDSTNVSKTKKSEKRPVSLAMSLLRGYYGLSPSQE--SIEGTEMKVYRADNELHTEGEPFSPPQSYANGGHQAVNRTSKIFLNGDLLNKAEKGGRGEYSLKTVDDLLFKEVLVTDSSCNEIDKASESSVRRRTKVEGMDYSTSPTENGLKQES-------SYTAKGGKGLSLRPRTGGKFSMTSDGTIALDHQFTISDPFMADAFVTGVGSLRGLRESPGNGKPAEELISKVRRSSSTPSL--QDSGRISPIKSGSRRQTKGDIQGVSTSSVPRPIFEGIPRPLNGRRNKAAID
D7T9H0_____________IEHQVSKMDTLAGIAIKYGVEVADIKRMNGLVTDLQMFALRTLQIPLPGRHPPSPCLLNSSETPQRNSDWTP-----TDSVHRNLFETFQSLRVKSSSQRPVSPAMSTLQGYYRLKPEDQRNAPKGFEMAVYRKESAHYLEDGPFSKQSSISNPLLSRV-RKCRSLANGFMPENGE----------AADDMTILEAKEGDYRWN------EKLIRRRQKSE-TDFSCSP-EMPLKEDNRSGGGGGGFSAITGKGLALRTKAVNRTATDADASLMNPIPVGLGDSIVTDSF------------------------AGVRKSSSTSNLQDQDSAIFPSIWPTSMWNLKPDLQALSTAAITRPIFDGLPKPITGRKNKAALD

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
844	13		86		0.999973
845		13		86	0.999973
846	13	86			0.999973
848		86		13	0.999973
1059	75			25	0.996473
1060	75			25	0.996473
1113	76			23	1.0
1657		83		16	0.994512
1663	83		16		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
403	414	GAG GAG GAG GAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain