SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene897

Length: 2547 nt

UniGene Fasta

>sp_v3.0_unigene897
CGATAACTAAGAAAAAAAAGTGGTCCAGTTTTTCGAATTAAACAATAGCAGAGGGAATCTGTCCGCGCGTGGGCATATATTGAGCTGGCTCTGCACAACAGCATCCATTTTCTTTTTTCCTTTAAAACCTGGTTGCAGGCTTACGTGCTCTGTTCATGCCCAGTATTCTTCGCTCACTTGTTTTCCTTACATTGCATGAAAAGAAATAACAATGGCCGTTTTTCTAATGAATAATGGTGGTCTTTCGGCGCAGAGTAGTCGATATTTGCTCTGCTAAGGTTATGATTATATTCAGACCTTCATAAGGTTTTGTGATCTCGAGGGTTAATTATGGAGCTGTGGTGGGCTATGCTGGTTATTGGCAGCGCAATTGGATTATGTCGTCTTCTGTTGATGCTTATACCTCCCGTAGTGCCTGCAATGGACGTAGATGCATCTGATGTTTTGGACGATGGTAGCCAGACAACGGGGGAGGGCTACATTTATATTCCAAGAAAGGGGAAAGGGGCACAAGCAGAAAGGGTCCAATGCTACGAACCTGCTACAATGAAGTACCTTGGATTTTTCCCAGCCTTGATACCAGATGAAGTCAGGGAACATGTCAGGCAAGCAAGAGAGGCACAAAAGGTGTGGGCCAAAAGTAGTTTCAAGCAACGAAGACAGTTACTGCGAATCTTTCTGAAATATATTATTCAACACCAAGAACTTATTTGCGAGATATCAGCAAGAGATACAGGTAAGACAATTGTGGATGCTTCCATGGGAGAGATAATGACAACATGCGAGAAGATTACCTGGCTGCTAGAAGAGGGTGAGCGCTGGCTGAAACCAGAACGCAGGTCTTCTGGCAGGTCAATGCTCCACAAATCTGCAAGAGTAGAGTTTCATCCTTTGGGGGTTATCGGTGCCATTGTTCCTTGGAATTATCCTTTCCATAATATTTTTAATCCGATGTTAGCAGCTGTTTTTTCTGGGAATGGTATCGTAATCAAGGTGTCAGAGCACGCAAGTTGGTCTGGTTGCTTCTATTTTCGGATTATTCAAGCTGGACTTTTGGCAGCAGGAGCACCTTCAGATCTGGTTCATGTGATAACAGGTTTTGGTGAAACTGGAGAAGCACTTGTCTCATCTGTTGACAAAGTGATATTTGTTGGATCTACTGCTGTTGGTAAGATGGTCATGGAAAATGCATCAAAGACATTAACCCCAGTAACACTTGAACTTGGTGGAAAAGATGCATTCATTGTTTGTGATGATGTGGATGTTCCTCATGTTGCACAAATAGCTGTCAGGGCTGCTCTACAATCAAGTGGGCAGAACTGTGCTGGTGCTGAGAGGTTTTATGTGCATCAAGATGTCTATGATTCTTTTAAGGCTCAAGTTATCAAGATTGTGAAATCTGTGCGTGTGGGGCCTCCTTTAGAGGCAAGGTATGATATGGGAGCAATCTGTTTACAAGAGCATGCTGATAAACTTCAAAGTCTTGTGAATGATGCTTTGGAGAAAGGTGCTGAGATAGCAGTCAGAGGAAAGTTATTTTTTGGAAGTCTGGGAGATGACGTGGTTGGTCAATTCTACCCACCTACAGTAATACTTAATGTGAATCATTCAATGCATTTGATGCAAGAGGAGATATTTGGACCAATCATTGCAATCATGAAGTTCAGCTCTGATGAGGAGGCTATAATGCTGGCAAATGATACAAACTATGGACTTGGCTGTGCTGTATTCTCTGGAAGCCAGCGTCGGGCAAGATCAATAGCATCGAGGATATACTGTGGATTTGCTGTAATTAATGACTTTGCTTCTAGCTATATGTGCCAGTCATTGCCATTTGGTGGAGTGAAGAATAGTGGATTTGGAAGATTTGCTGGTGTTGAAGGTCTTCGTGCATGCTGTCTTATCAAAGCCGTTGTAGAGGATAGATGGTGGCCGTACATCAAGACCAAGATTCCAAAGCCATTGCAGTATCCTGTCGCAGAGAACGCCTTTGAGGTCCAAGAATCTCTAGTTGAAACACTATATGGTTTGAGCATCTGGGATAGGCTCAGAGGATTGGTGAATGTTATCAAACTCTTATCTGAGCCAAATATTCCTGATGAAACAAGGAAAGCTCAATGACCTGTTTTGAAGGAATATTCCTTCACTAGCCATGAAGAGGCTGTGACATCAACATTTGAATGAAATGAGGACATTCTATTCCATAACGTGGCCATTTCTTATGTTTAATTGTAAGAAAATCAGGGCGGTGGTTAGTCTTAAGATTTTGATTGGAGATGCATTTTATAGCTAGTTTACAATTTATATGGTAGAAAGTATCTGATTTGTTTTCCATAGTATATAATCTAAAGGATTACCAATTTTGGCATGTAACAAGAACCTTTATAAAAAGACCTTTGTAAAGCATTAACTACATTTAATGAACAAGAGATCACGAGTTCAAACTATTGAACTGACACTTGCGTTTCTAGTTCATATGAGTCCTATTGCATACTTGGTCTTCTATTACCTATGCAATTTTTTGAGTACATTTAGTTTGAATATGGA

Ace file of the UniGene sp_v3.0_unigene897

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Aldehyde dehydrogenase [Medicago truncatula]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Sma3	Chromosome chr5 scaffold_64, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00033134001;

Source	GOs	Term	Type	e value	Identity
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G66658.2	ALDH22A1 aldehyde dehydrogenase 22A1 chr3:2095341-2099013 REVERSE LENGTH=596	75%
RefSeq	Arabidopsis thaliana	NP_974242.1	aldehyde dehydrogenase 22A1 [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002312334.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7Y0

Fln msg:

Fln protein: MELWWAMLVIGSAIGLCRLLLMLIPPVVPAMDVDASDVLDDGSQTTGEGYIYIPRKGKGAQAERVQCYEPATMKYLGFFPALIPDEVREHVRQAREAQKVWAKSSFKQRRQLLRIFLKYIIQHQELICEISARDTGKTIVDASMGEIMTTCEKITWLLEEGERWLKPERRSSGRSMLHKSARVEFHPLGVIGAIVPWNYPFHNIFNPMLAAVFSGNGIVIKVSEHASWSGCFYFRIIQAGLLAAGAPSDLVHVITGFGETGEALVSSVDKVIFVGSTAVGKMVMENASKTLTPVTLELGGKDAFIVCDDVDVPHVAQIAVRAALQSSGQNCAGAERFYVHQDVYDSFKAQVIKIVKSVRVGPPLEARYDMGAICLQEHADKLQSLVNDALEKGAEIAVRGKLFFGSLGDDVVGQFYPPTVILNVNHSMHLMQEEIFGPIIAIMKFSSDEEAIMLANDTNYGLGCAVFSGSQRRARSIASRIYCGFAVINDFASSYMCQSLPFGGVKNSGFGRFAGVEGLRACCLIKAVVEDRWWPYIKTKIPKPLQYPVAENAFEVQESLVETLYGLSIWDRLRGLVNVIKLLSEPNIPDETRKAQ*

Protein Length: 598

Fln nts: CGATAACTAAGAAAAAAAAGTGGTCCAGTTTTTCGAATTAAACAATAGCAGAGGGAATCTGTCCGCGCGTGGGCATATATTGAGCTGGCTCTGCACAACAGCATCCATTTTCTTTTTTCCTTTAAAACCTGGTTGCAGGCTTACGTGCTCTGTTCATGCCCAGTATTCTTCGCTCACTTGTTTTCCTTACATTGCATGAAAAGAAATAACAATGGCCGTTTTTCTAATGAATAATGGTGGTCTTTCGGCGCAGAGTAGTCGATATTTGCTCTGCTAAGGTTATGATTATATTCAGACCTTCATAAGGTTTTGTGATCTCGAGGGTTAATT_-_ATGGAGCTGTGGTGGGCTATGCTGGTTATTGGCAGCGCAATTGGATTATGTCGTCTTCTGTTGATGCTTATACCTCCCGTAGTGCCTGCAATGGACGTAGATGCATCTGATGTTTTGGACGATGGTAGCCAGACAACGGGGGAGGGCTACATTTATATTCCAAGAAAGGGGAAAGGGGCACAAGCAGAAAGGGTCCAATGCTACGAACCTGCTACAATGAAGTACCTTGGATTTTTCCCAGCCTTGATACCAGATGAAGTCAGGGAACATGTCAGGCAAGCAAGAGAGGCACAAAAGGTGTGGGCCAAAAGTAGTTTCAAGCAACGAAGACAGTTACTGCGAATCTTTCTGAAATATATTATTCAACACCAAGAACTTATTTGCGAGATATCAGCAAGAGATACAGGTAAGACAATTGTGGATGCTTCCATGGGAGAGATAATGACAACATGCGAGAAGATTACCTGGCTGCTAGAAGAGGGTGAGCGCTGGCTGAAACCAGAACGCAGGTCTTCTGGCAGGTCAATGCTCCACAAATCTGCAAGAGTAGAGTTTCATCCTTTGGGGGTTATCGGTGCCATTGTTCCTTGGAATTATCCTTTCCATAATATTTTTAATCCGATGTTAGCAGCTGTTTTTTCTGGGAATGGTATCGTAATCAAGGTGTCAGAGCACGCAAGTTGGTCTGGTTGCTTCTATTTTCGGATTATTCAAGCTGGACTTTTGGCAGCAGGAGCACCTTCAGATCTGGTTCATGTGATAACAGGTTTTGGTGAAACTGGAGAAGCACTTGTCTCATCTGTTGACAAAGTGATATTTGTTGGATCTACTGCTGTTGGTAAGATGGTCATGGAAAATGCATCAAAGACATTAACCCCAGTAACACTTGAACTTGGTGGAAAAGATGCATTCATTGTTTGTGATGATGTGGATGTTCCTCATGTTGCACAAATAGCTGTCAGGGCTGCTCTACAATCAAGTGGGCAGAACTGTGCTGGTGCTGAGAGGTTTTATGTGCATCAAGATGTCTATGATTCTTTTAAGGCTCAAGTTATCAAGATTGTGAAATCTGTGCGTGTGGGGCCTCCTTTAGAGGCAAGGTATGATATGGGAGCAATCTGTTTACAAGAGCATGCTGATAAACTTCAAAGTCTTGTGAATGATGCTTTGGAGAAAGGTGCTGAGATAGCAGTCAGAGGAAAGTTATTTTTTGGAAGTCTGGGAGATGACGTGGTTGGTCAATTCTACCCACCTACAGTAATACTTAATGTGAATCATTCAATGCATTTGATGCAAGAGGAGATATTTGGACCAATCATTGCAATCATGAAGTTCAGCTCTGATGAGGAGGCTATAATGCTGGCAAATGATACAAACTATGGACTTGGCTGTGCTGTATTCTCTGGAAGCCAGCGTCGGGCAAGATCAATAGCATCGAGGATATACTGTGGATTTGCTGTAATTAATGACTTTGCTTCTAGCTATATGTGCCAGTCATTGCCATTTGGTGGAGTGAAGAATAGTGGATTTGGAAGATTTGCTGGTGTTGAAGGTCTTCGTGCATGCTGTCTTATCAAAGCCGTTGTAGAGGATAGATGGTGGCCGTACATCAAGACCAAGATTCCAAAGCCATTGCAGTATCCTGTCGCAGAGAACGCCTTTGAGGTCCAAGAATCTCTAGTTGAAACACTATATGGTTTGAGCATCTGGGATAGGCTCAGAGGATTGGTGAATGTTATCAAACTCTTATCTGAGCCAAATATTCCTGATGAAACAAGGAAAGCTCAATGA___CCTGTTTTGAAGGAATATTCCTTCACTAGCCATGAAGAGGCTGTGACATCAACATTTGAATGAAATGAGGACATTCTATTCCATAACGTGGCCATTTCTTATGTTTAATTGTAAGAAAATCAGGGCGGTGGTTAGTCTTAAGATTTTGATTGGAGATGCATTTTATAGCTAGTTTACAATTTATATGGTAGAAAGTATCTGATTTGTTTTCCATAGTATATAATCTAAAGGATTACCAATTTTGGCATGTAACAAGAACCTTTATAAAAAGACCTTTGTAAAGCATTAACTACATTTAATGAACAAGAGATCACGAGTTCAAACTATTGAACTGACACTTGCGTTTCTAGTTCATATGAGTCCTATTGCATACTTGGTCTTCTATTACCTATGCAATTTTTTGAGTACATTTAGTTTGAATATGGA

Fln Alignment:

Contig897___MELWWAMLVIGSAIGLCRLLLMLIPPVVPAMDVDASDVLDDGSQTTGEGYIYIPRKGKGAQAERVQCYEPATMKYLGFFPALIPDEVREHVRQAREAQKVWAKSSFKQRRQLLRIFLKYIIQHQELICEISARDTGKTIVDASMGEIMTTCEKITWLLEEGERWLKPERRSSGRSMLHKSARVEFHPLGVIGAIVPWNYPFHNIFNPMLAAVFSGNGIVIKVSEHASWSGCFYFRIIQAGLLAAGAPSDLVHVITGFGETGEALVSSVDKVIFVGSTAVGKMVMENASKTLTPVTLELGGKDAFIVCDDVDVPHVAQIAVRAALQSSGQNCAGAERFYVHQDVYDSFKAQVIKIVKSVRVGPPLEARYDMGAICLQEHADKLQSLVNDALEKGAEIAVRGKLFFGSLGDDVVGQFYPPTVILNVNHSMHLMQEEIFGPIIAIMKFSSDEEAIMLANDTNYGLGCAVFSGSQXXXXXXXXXXYCGFAVINDFASSYMCQSLPFGGVKNSGFGRFAGVEGLRACCLIKAVVEDRWWPYIKTKIPKPLQYPVAENAFEVQESLVETLYGLSIWDRLRGLVNVIKLLSEPNIPDETRKAQ
D5A7Y0_____________MELWWVVLVIGSAIALCRLLLMLIPPVVPAMDVDASDVLDDGSQTTGEGYIYIPRKGKGAQAERVQCYEPATMKYLGFFPALTPDEVREHVKQAREAQKVWGKSSFKQRRQLLRIFLKYIIQHQELICEISARDTGKTIVDASMGEIMTTCEKITWLLEEGERWLKPEHRSSGRSMLHKSARVEFHPLGVIGAIVPWNYPFHNIFNPMLAAVFSGNAIVIKVSEHASWSGCFYFRIIQAGLLAAGAPSDLVHVITGFGETGEALVSSVDKVIFVGSTAVGKMVMENASKTLTPVTLELGGKDAFIVCDDVDVPHVAQIAVRAALQSSGQNCAGAERFYVHQDVYDSFKAQVIKIVKSVRVGPPLEGRYDMGAVCLQEHADKLQSLVNDALEKGAEIAVRGKLFFGSLGDDVVGQFYPPTVILNVNHSMRLMQEEIFGPIIAIMKFSSDEEAIMLANDTNYGLGCAVFSGSQRRARSIASRIYCGFAVINDFASSYMCQSLPFGGVKNSGFGRFAGVEGLRACCLIKAVVEDRWWPYIKTKIPKPLQYPVAENAFEVQESLVEALYGLSIWDRLRGLVNVIKLLSEPNIPDETRKAQ

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
284	20		80		0.995493
1006		75		25	0.996473
1178			83	16	0.994512
1243		71		28	1.0
1390		12	87		0.999964
1451	10			90	0.90298
1452		10	90		0.90298
1453	10			90	0.90298
1504		10	90		0.90298
1506	90			10	0.90298
1507	90			10	0.90298
1549	16			83	0.994512
1552			83	16	0.994512
1600		16		83	0.994512
1789	71			28	1.0
1790			85	14	0.993533
1791			14	85	0.993533
1792	85		14		0.993533
1793	85		14		0.993533
1822		87		12	0.992554
2164		71		28	1.0
2211		9		90	0.999842
2272			50	50	1.0
2309			80	19	1.0
2450	10			90	0.90298
2451		10	90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain