SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene856

Length: 2075 nt

UniGene Fasta

>sp_v3.0_unigene856
TACATGGAGGAGGATGTTTTTCCAGTCAAATTAAGTACGTGTATAGAGTACCTGGTTGAGTAGTAGATTCCTCCAATGATCCATTCGTTTTTCACAGGGCAGCACGAATACGCACGGAAACTTTTAAGGTAACCGATCCAATATAGAGATTCCTTATTCTTCTTTCCCCTCTTTATGTTTGTCTCTCCTCTGCAACTGAAATAAGTACCGATCTGGATCAGGATCAGAAAATGAGATTCGGGATTTCCCATCGACAAAACAAGATTTGCAACTGAAATAATTCCCGATCTGGATCAGGATCAGGGACCGAGATTCGGGATTTCCCGTCGGCAAAACAAGATTTGGATGGGCGGGTCTTCGAATGATGATGAAGATCAAGAACATGAAAACATTGAAGCCGGTGGTCAGCGGATCGAATCTCGTTCGGGCTCGAAATCGAAGAAGCTGAAGCTCATCCCGTTGATATTTCTGATATACTTCGAAGTCTCAGGAGGTCCGTTCGGCGAAGAGCCGGCAGTGAAAGCGGCCGGGCCGCTGTTGGCCATAGCAGGGTTCCTGGTCTTCCCGTTCGTATGGAGTATCCCGGAGGCACTGGTGACTGCGGAGCTGGCCACGACATACCCTGGAAACGGCGGCTACGTGGTCTGGGCCGGTACAGCGTTCGGGCCCTTTTGGGGGTTCCTCATGGGCTGGTGGAAATGGATCGGCGGCGTCATCAACAATGCCGCCTACCCTGTACTCTGCTTCGATTACCTCAAGCTCCTTCTCCCGGCCTGTGGCCACGGCCCGGTCAGAGACGTGGGGATTTTGCTTTACACGGTTCTCCTGAGCTACTTGAACTTCACAGGGCTGTCGATTGTGGGTTGGACCGCGGCAATTTTGGGGACGGTATCGTTGCTTCCGTTCGTCCTCATGGCCCTAATATCGATTCCCCAAATTAAGGCCTCGCGCTGGCTCGTGGCCGACCAGGGTCACATGGACTGGTCCTTGTATTTCAATACACTGTTCTGGAACTTGAATTTCTGGGACAACGCGAGCACTCTGGCCGGGGAAGTCGAGGAGCCGCAGCGGACATTCCCGCGGGCGTTGCTCTGCGCCGGGGTATTGACCGTCGTGGGCTACGTTTTGCCTTTGCTTGCGATAACCGGTGCGCTGGAGCTGGACAGGGAGCTCTGGAGTGACGGCTACCTGGCAGATGCTGCGGAGCTAATTGCCGGTGCGTGGCTCAAGTACTGGGTTGAGATCGGAGCCGTGCTGTCGACCGTGGGACTCTTCGAAGCCCAGCTGAGCAGTGCTTCATTCCAGTTGTTGGGCATGGCGGAGATGGGCATCCTCCCCTCCGTCATGGGCTCGAGGTCGCCGTCCTACAATACGCCCACGTGGGGTATCCTTGCCTCTACCTGCGGGACGCTGGTGCTTTCCTATGTGAGCTTCACGAACATCGTCTCTGCTGCCAATTTCCTGTACAGCTGCGGGATGCTGCTGGAGTTCGCCTCGTTTTTGTGGCTGAGAAGGAAGTTTCCATTGATGAAGAGGCCATACAGGGTTCCTCTCGCGATCCCGGGTCTGGTTTGCATGTGTGCAGTGCCCGTGGGGTTTCTGATCTTCGTAATGACTCTCGCCAATTCGGTCGTCTACATCCTGGCCTTCTCTGTCACAGTTGTGGGCATTCTGGGCTATTTCTTGATGATCACCTGCAAGAGGAGGAATTGGATTGCATTCGGAATTGAAAGTGAAGGTGAAAGGGGCGGAATCCAGAGTTCTCCCGCCGAGAATCGAACCGAGGCGGAGGCTCTGCTGCGCCCCTAACGAGCAGCGCTGGAAGGATGGGGTGGTCCCCTAGATTCGTTTGGGATCACGCAGAAACGTTTAGCCCAATCAACACGCCACGTCAACTTTTCCAAAGATTCTGCCACGTACGTCAGACTTCCCATTGATTCCGCCACGTCAGCTTCATTTATTGTATGCGTCTGTATATGGTATCTTTTCTGCGTGGTTAAAATATATGTATCTTTTCTATGTCGTTAAACTTTATATTTTTATCAATGGTAATTGAGTGACAACTTGGTTGGGCG

Ace file of the UniGene sp_v3.0_unigene856

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Neutral amino acid transport protein n=1 Tax=Populus trichocarpa RepID=B9GLG7_POPTR	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	-
Sma3	amino acid transport	GO:0006865	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid/polyamine transporter I	IPR002293	-	0.0	-
Sma3	Amino acid permease domain	IPR004841	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G13620.1	Amino acid permease family protein chr3:4450904-4452556 REVERSE LENGTH=478	59%
RefSeq	Arabidopsis thaliana	NP_566460.1	Amino acid permease family protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002299116.1	neutral amino acid transport protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVV3

Fln msg:

Fln protein: MGGSSNDDEDQEHENIEAGGQRIESRSGSKSKKLKLIPLIFLIYFEVSGGPFGEEPAVKAAGPLLAIAGFLVFPFVWSIPEALVTAELATTYPGNGGYVVWAGTAFGPFWGFLMGWWKWIGGVINNAAYPVLCFDYLKLLLPACGHGPVRDVGILLYTVLLSYLNFTGLSIVGWTAAILGTVSLLPFVLMALISIPQIKASRWLVADQGHMDWSLYFNTLFWNLNFWDNASTLAGEVEEPQRTFPRALLCAGVLTVVGYVLPLLAITGALELDRELWSDGYLADAAELIAGAWLKYWVEIGAVLSTVGLFEAQLSSASFQLLGMAEMGILPSVMGSRSPSYNTPTWGILASTCGTLVLSYVSFTNIVSAANFLYSCGMLLEFASFLWLRRKFPLMKRPYRVPLAIPGLVCMCAVPVGFLIFVMTLANSVVYILAFSVTVVGILGYFLMITCKRRNWIAFGIESEGERGGIQSSPAENRTEAEALLRP*

Protein Length: 489

Fln nts: TACATGGAGGAGGATGTTTTTCCAGTCAAATTAAGTACGTGTATAGAGTACCTGGTTGAGTAGTAGATTCCTCCAATGATCCATTCGTTTTTCACAGGGCAGCACGAATACGCACGGAAACTTTTAAGGTAACCGATCCAATATAGAGATTCCTTATTCTTCTTTCCCCTCTTTATGTTTGTCTCTCCTCTGCAACTGAAATAAGTACCGATCTGGATCAGGATCAGAAAATGAGATTCGGGATTTCCCATCGACAAAACAAGATTTGCAACTGAAATAATTCCCGATCTGGATCAGGATCAGGGACCGAGATTCGGGATTTCCCGTCGGCAAAACAAGATTTGG_-_ATGGGCGGGTCTTCGAATGATGATGAAGATCAAGAACATGAAAACATTGAAGCCGGTGGTCAGCGGATCGAATCTCGTTCGGGCTCGAAATCGAAGAAGCTGAAGCTCATCCCGTTGATATTTCTGATATACTTCGAAGTCTCAGGAGGTCCGTTCGGCGAAGAGCCGGCAGTGAAAGCGGCCGGGCCGCTGTTGGCCATAGCAGGGTTCCTGGTCTTCCCGTTCGTATGGAGTATCCCGGAGGCACTGGTGACTGCGGAGCTGGCCACGACATACCCTGGAAACGGCGGCTACGTGGTCTGGGCCGGTACAGCGTTCGGGCCCTTTTGGGGGTTCCTCATGGGCTGGTGGAAATGGATCGGCGGCGTCATCAACAATGCCGCCTACCCTGTACTCTGCTTCGATTACCTCAAGCTCCTTCTCCCGGCCTGTGGCCACGGCCCGGTCAGAGACGTGGGGATTTTGCTTTACACGGTTCTCCTGAGCTACTTGAACTTCACAGGGCTGTCGATTGTGGGTTGGACCGCGGCAATTTTGGGGACGGTATCGTTGCTTCCGTTCGTCCTCATGGCCCTAATATCGATTCCCCAAATTAAGGCCTCGCGCTGGCTCGTGGCCGACCAGGGTCACATGGACTGGTCCTTGTATTTCAATACACTGTTCTGGAACTTGAATTTCTGGGACAACGCGAGCACTCTGGCCGGGGAAGTCGAGGAGCCGCAGCGGACATTCCCGCGGGCGTTGCTCTGCGCCGGGGTATTGACCGTCGTGGGCTACGTTTTGCCTTTGCTTGCGATAACCGGTGCGCTGGAGCTGGACAGGGAGCTCTGGAGTGACGGCTACCTGGCAGATGCTGCGGAGCTAATTGCCGGTGCGTGGCTCAAGTACTGGGTTGAGATCGGAGCCGTGCTGTCGACCGTGGGACTCTTCGAAGCCCAGCTGAGCAGTGCTTCATTCCAGTTGTTGGGCATGGCGGAGATGGGCATCCTCCCCTCCGTCATGGGCTCGAGGTCGCCGTCCTACAATACGCCCACGTGGGGTATCCTTGCCTCTACCTGCGGGACGCTGGTGCTTTCCTATGTGAGCTTCACGAACATCGTCTCTGCTGCCAATTTCCTGTACAGCTGCGGGATGCTGCTGGAGTTCGCCTCGTTTTTGTGGCTGAGAAGGAAGTTTCCATTGATGAAGAGGCCATACAGGGTTCCTCTCGCGATCCCGGGTCTGGTTTGCATGTGTGCAGTGCCCGTGGGGTTTCTGATCTTCGTAATGACTCTCGCCAATTCGGTCGTCTACATCCTGGCCTTCTCTGTCACAGTTGTGGGCATTCTGGGCTATTTCTTGATGATCACCTGCAAGAGGAGGAATTGGATTGCATTCGGAATTGAAAGTGAAGGTGAAAGGGGCGGAATCCAGAGTTCTCCCGCCGAGAATCGAACCGAGGCGGAGGCTCTGCTGCGCCCCTAA___CGAGCAGCGCTGGAAGGATGGGGTGGTCCCCTAGATTCGTTTGGGATCACGCAGAAACGTTTAGCCCAATCAACACGCCACGTCAACTTTTCCAAAGATTCTGCCACGTACGTCAGACTTCCCATTGATTCCGCCACGTCAGCTTCATTTATTGTATGCGTCTGTATATGGTATCTTTTCTGCGTGGTTAAAATATATGTATCTTTTCTATGTCGTTAAACTTTATATTTTTATCAATGGTAATTGAGTGACAACTTGGTTGGGCG

Fln Alignment:

Contig856___MGGSSNDDEDQEHENIEAGGQRIEXXXXXXXXXXXXXXXXXXXYFEVSGGPFGEEPAVKAAGPLLAIAGFLVFPFVWSIPEALVTAELATTYPGNGGYVVWAGTAFGPFWGFLMGWWKWIGGVINNAAYPVLCFDYLKLLLPACGHGPVRDVGILLYTVLLSYLNFTGLSIVGWTAAILGTVSLLPFVLMALISIPQIKASRWLVADQGHMDWSLYFNTLFWNLNFWDNASTLAGEVEEPQRTFPRALLCAGVLTVVGYVLPLLAITGALELDRELWSDGYLADAAELIAGAWLKYWVEIGAVLSTVGLFEAQLSSASFQLLGMAEMGILPSVMGSRSPSYNTPTWGILASTCGTLVLSYVSFTNIVSAANFLYSCGMLLEFASFLWLRRKFPLMKRPYRVPLAIPGLVCMCAVPVGFLIFVMTLANSVVYILAFSVTVVGILGYFLMITCKRRNWIAFGIESEGERGGIQSSPAEN
A9NVV3_____________MGGSSNDDEDQEHENVGAGGQRIESRSGSKSKKLKLIPLIFLIYFEVSGGPFGEETAVKAAGPLLAIAGFLIFPFVWSIPEALVTAELATAYPGNGGYVVWAGTAFGPFWGFLMGWWKWIGGVINNAAYPVLCFDYLKLLLPACGHGPVRDVGILLYTFLLSYLNFTGLSIVGWTAAILGTLSLLPFVLMALISIPRIKPSRWVVADQGHMDWSLYFNTLFWNLNFWDNASTLAGEVEEPQRTFPRALLCAGVLTVLGYVLPLLAATGALELDRELWSDGYLADAAGLIAGAWLKYWVEIGAVLSTVGLFEAQLSSASFQLLGMAEMGILPSVMATRSPSYNTPTWGIAASACGTLVLSYVSFANIVSAANFLYSCGMLLEFASFLWLRRKFPSLKRPYRVPLGIPGLVCMCAVPVVFLIFVMTLANSVVYILGSSVTVVGVLGYFLMIACKKRNWIAFRIEGEGERGGIQSSPAED

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
400		42	57		1.0
438			50	50	1.0
447	25		75		1.0
459			75	25	1.0
594			75	25	0.996473
636	33	66			1.0
768		87		12	0.992554
787		87		12	0.992554
831	14	85			0.993533
832		14		85	0.993533
1021	10			90	0.90298
1022		10		90	0.90298
1023	10	90			0.90298
1025			90	10	0.90298
1033	11		88		0.923564
1037			88	11	0.923564
1038		88		11	0.923564
1143	85	14			0.993533
1153		85		14	0.993533
1165	85	14			0.993533
1204		20	80		0.999996
1214	11	88			0.923564
1216	11		88		0.923564
1217			88	11	0.923564
1424	20	80			0.995493
1426	80		20		0.995493
1427			20	80	0.995493
1641	81		18		1.0
1644		87	12		0.999964
1647	12		87		0.999964
1652		87	12		0.999964
1653			12	87	0.999964
1796		53		46	1.0
1849		62		37	1.0
1856		37	62		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain